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Running in a fresh conda environment, python 3.10.
(robo_descriptor) PS C:\Users\sterg\Documents\GitHub\sparks-baird\robo_descriptor> pip install -r .\requirements.txt Collecting gensim==4.0.1 Downloading gensim-4.0.1.tar.gz (23.1 MB) ━━━━━━━━━━━━ 23.1/23.1 MB 14.2 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting matminer==0.6.2 Using cached matminer-0.6.2.tar.gz (6.8 MB) Preparing metadata (setup.py) ... done Collecting matplotlib==3.4.2 Downloading matplotlib-3.4.2.tar.gz (37.3 MB) ━━━━━━━━━━━━ 37.3/37.3 MB 27.3 MB/s eta 0:00:00 Preparing metadata (setup.py) ... done Collecting matplotlib-inline==0.1.3 Using cached matplotlib_inline-0.1.3-py3-none-any.whl (8.2 kB) Collecting numpy==1.21.6 Using cached numpy-1.21.6-cp310-cp310-win_amd64.whl (14.0 MB) Collecting pandas==1.3.1 Downloading pandas-1.3.1.tar.gz (4.7 MB) ━━━━━━━━━━━━━━ 4.7/4.7 MB 37.7 MB/s eta 0:00:00 Installing build dependencies ... error error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> [315 lines of output] Ignoring numpy: markers 'python_version == "3.7" and (platform_machine != "arm64" or platform_system != "Darwin") and platform_machine != "aarch64"' don't match your environment Ignoring numpy: markers 'python_version == "3.8" and (platform_machine != "arm64" or platform_system != "Darwin") and platform_machine != "aarch64"' don't match your environment Ignoring numpy: markers 'python_version == "3.7" and platform_machine == "aarch64"' don't match your environment Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "aarch64"' don't match your environment Ignoring numpy: markers 'python_version == "3.8" and platform_machine == "arm64" and platform_system == "Darwin"' don't match your environment Ignoring numpy: markers 'python_version == "3.9" and platform_machine == "arm64" and platform_system == "Darwin"' don't match your environment Collecting setuptools>=38.6.0 Downloading setuptools-67.1.0-py3-none-any.whl (1.1 MB) ---------------------------------------- 1.1/1.1 MB 5.7 MB/s eta 0:00:00 Collecting wheel Using cached wheel-0.38.4-py3-none-any.whl (36 kB) Collecting Cython<3,>=0.29.21 Downloading Cython-0.29.33-py2.py3-none-any.whl (987 kB) ------------------------------------- 987.3/987.3 kB 10.5 MB/s eta 0:00:00 Collecting numpy==1.19.3 Downloading numpy-1.19.3.zip (7.3 MB) ---------------------------------------- 7.3/7.3 MB 13.8 MB/s eta 0:00:00 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'error' error: subprocess-exited-with-error Preparing metadata (pyproject.toml) did not run successfully. exit code: 1 [275 lines of output] setup.py:67: RuntimeWarning: NumPy 1.19.3 may not yet support Python 3.10. warnings.warn( Running from numpy source directory. setup.py:480: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random\_bounded_integers.pxd.in Processing numpy/random\bit_generator.pyx Processing numpy/random\mtrand.pyx Processing numpy/random\_bounded_integers.pyx.in Processing numpy/random\_common.pyx Processing numpy/random\_generator.pyx Processing numpy/random\_mt19937.pyx Processing numpy/random\_pcg64.pyx Processing numpy/random\_philox.pyx Processing numpy/random\_sfc64.pyx Cythonizing sources blas_opt_info: blas_mkl_info: No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils customize MSVCCompiler libraries mkl_rt not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE blis_info: libraries blis not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE openblas_info: libraries openblas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] get_default_fcompiler: matching types: '['gnu', 'intelv', 'absoft', 'compaqv', 'intelev', 'gnu95', 'g95', 'intelvem', 'intelem', 'flang']' customize GnuFCompiler Could not locate executable g77 Could not locate executable f77 customize IntelVisualFCompiler Could not locate executable ifort Could not locate executable ifl customize AbsoftFCompiler Could not locate executable f90 customize CompaqVisualFCompiler Could not locate executable DF customize IntelItaniumVisualFCompiler Could not locate executable efl customize Gnu95FCompiler Could not locate executable gfortran Could not locate executable f95 customize G95FCompiler Could not locate executable g95 customize IntelEM64VisualFCompiler customize IntelEM64TFCompiler Could not locate executable efort Could not locate executable efc customize PGroupFlangCompiler Could not locate executable flang don't know how to compile Fortran code on platform 'nt' NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS libraries tatlas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE atlas_3_10_blas_info: libraries satlas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE atlas_blas_threads_info: Setting PTATLAS=ATLAS libraries ptf77blas,ptcblas,atlas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE atlas_blas_info: libraries f77blas,cblas,atlas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE accelerate_info: NOT AVAILABLE C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\system_info.py:1914: UserWarning: Optimized (vendor) Blas libraries are not found. Falls back to netlib Blas library which has worse performance. A better performance should be easily gained by switching Blas library. if self._calc_info(blas): blas_info: libraries blas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\system_info.py:1914: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. if self._calc_info(blas): blas_src_info: NOT AVAILABLE C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\system_info.py:1914: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. if self._calc_info(blas): NOT AVAILABLE non-existing path in 'numpy\\distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE flame_info: libraries flame not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries tatlas,tatlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries lapack_atlas not found in C:\ libraries tatlas,tatlas not found in C:\ libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries tatlas,tatlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries lapack_atlas not found in C:\Users\sterg\miniconda3\Library\lib libraries tatlas,tatlas not found in C:\Users\sterg\miniconda3\Library\lib <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> NOT AVAILABLE atlas_3_10_info: libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries satlas,satlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries lapack_atlas not found in C:\ libraries satlas,satlas not found in C:\ libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries satlas,satlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries lapack_atlas not found in C:\Users\sterg\miniconda3\Library\lib libraries satlas,satlas not found in C:\Users\sterg\miniconda3\Library\lib <class 'numpy.distutils.system_info.atlas_3_10_info'> NOT AVAILABLE atlas_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries ptf77blas,ptcblas,atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries lapack_atlas not found in C:\ libraries ptf77blas,ptcblas,atlas not found in C:\ libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries ptf77blas,ptcblas,atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries lapack_atlas not found in C:\Users\sterg\miniconda3\Library\lib libraries ptf77blas,ptcblas,atlas not found in C:\Users\sterg\miniconda3\Library\lib <class 'numpy.distutils.system_info.atlas_threads_info'> NOT AVAILABLE atlas_info: libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries f77blas,cblas,atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\lib libraries lapack_atlas not found in C:\ libraries f77blas,cblas,atlas not found in C:\ libraries lapack_atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries f77blas,cblas,atlas not found in C:\Users\sterg\Miniconda3\envs\robo_descriptor\libs libraries lapack_atlas not found in C:\Users\sterg\miniconda3\Library\lib libraries f77blas,cblas,atlas not found in C:\Users\sterg\miniconda3\Library\lib <class 'numpy.distutils.system_info.atlas_info'> NOT AVAILABLE lapack_info: libraries lapack not found in ['C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\lib', 'C:\\', 'C:\\Users\\sterg\\Miniconda3\\envs\\robo_descriptor\\libs', 'C:\\Users\\sterg\\miniconda3\\Library\\lib'] NOT AVAILABLE C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\system_info.py:1748: UserWarning: Lapack (http://www.netlib.org/lapack/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [lapack]) or by setting the LAPACK environment variable. return getattr(self, '_calc_info_{}'.format(name))() lapack_src_info: NOT AVAILABLE C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\system_info.py:1748: UserWarning: Lapack (http://www.netlib.org/lapack/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [lapack_src]) or by setting the LAPACK_SRC environment variable. return getattr(self, '_calc_info_{}'.format(name))() NOT AVAILABLE numpy_linalg_lapack_lite: FOUND: language = c define_macros = [('HAVE_BLAS_ILP64', None), ('BLAS_SYMBOL_SUFFIX', '64_')] C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\dist.py:275: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build\src.win-amd64-3.10 creating build\src.win-amd64-3.10\numpy creating build\src.win-amd64-3.10\numpy\distutils building library "npymath" sources Traceback (most recent call last): File "C:\Users\sterg\miniconda3\envs\robo_descriptor\Lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 351, in <module> main() File "C:\Users\sterg\miniconda3\envs\robo_descriptor\Lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 333, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "C:\Users\sterg\miniconda3\envs\robo_descriptor\Lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 152, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 508, in <module> setup_package() File "setup.py", line 500, in setup_package setup(**metadata) File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\core.py", line 169, in setup return old_setup(**new_attr) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\core.py", line 148, in setup dist.run_commands() File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 967, in run_commands self.run_command(cmd) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 986, in run_command cmd_obj.run() File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\command\dist_info.py", line 31, in run egg_info.run() File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\egg_info.py", line 24, in run self.run_command("build_src") File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\cmd.py", line 313, in run_command self.distribution.run_command(command) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\dist.py", line 986, in run_command cmd_obj.run() File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\build_src.py", line 144, in run self.build_sources() File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy\core\setup.py", line 658, in get_mathlib_info st = config_cmd.try_link('int main(void) { return 0;}') File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\command\config.py", line 243, in try_link self._link(body, headers, include_dirs, File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\config.py", line 162, in _link return self._wrap_method(old_config._link, lang, File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\config.py", line 96, in _wrap_method ret = mth(*((self,)+args)) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\command\config.py", line 137, in _link (src, obj) = self._compile(body, headers, include_dirs, lang) File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\config.py", line 105, in _compile src, obj = self._wrap_method(old_config._compile, lang, File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\command\config.py", line 96, in _wrap_method ret = mth(*((self,)+args)) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\command\config.py", line 132, in _compile self.compiler.compile([src], include_dirs=include_dirs) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\_msvccompiler.py", line 401, in compile self.spawn(args) File "C:\Users\sterg\AppData\Local\Temp\pip-build-env-lp7ed3sn\overlay\Lib\site-packages\setuptools\_distutils\_msvccompiler.py", line 505, in spawn return super().spawn(cmd, env=env) File "C:\Users\sterg\AppData\Local\Temp\pip-install-5c29bi3y\numpy_bc053157b7d346a4809e8e3c45428d39\numpy\distutils\ccompiler.py", line 90, in <lambda> m = lambda self, *args, **kw: func(self, *args, **kw) TypeError: CCompiler_spawn() got an unexpected keyword argument 'env' [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed Encountered error while generating package metadata. See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details. [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output. note: This error originates from a subprocess, and is likely not a problem with pip.
Unpinning everything except for robocrys and xgboost installed fine.
robocrys
xgboost
gensim matminer matplotlib matplotlib-inline plotly pymatgen robocrys==0.2.7 xgboost==0.80
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Running in a fresh conda environment, python 3.10.
Unpinning everything except for
robocrys
andxgboost
installed fine.The text was updated successfully, but these errors were encountered: