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Project until frame.ijm
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Project until frame.ijm
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/** ===============================================================================
* Copyright (C) 2020 Jan Niklas Hansen
* *
* This macro is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation (http://www.gnu.org/licenses/gpl.txt )
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
*
* For any questions please feel free to contact me ([email protected]).
* =============================================================================== */
imgID = getImageID();
selectImage(imgID);
Stack.getDimensions(ww, hh, channels, slices, frames);
selectImage(imgID);
run("Duplicate...", "duplicate");
copyID = getImageID();
selectImage(copyID);
run("Stack to Hyperstack...", "order=xyczt(default) channels=1 slices="
+ slices + " frames=" + frames + " display=Color");
for (i = 0; i < frames; i++) {
j = 0;
selectImage(imgID);
run("Z Project...", "stop=" + (i+1)
+ " projection=[Max Intensity]");
tempID = getImageID();
selectImage(tempID);
run("Select All");
run("Copy");
selectImage(tempID);
close();
selectImage(copyID);
Stack.setPosition(1, j + 1, i + 1);
run("Select All");
run("Paste");
}
selectImage(copyID);