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Welcome to the CiliaQ wiki! Please note that construction of the CiliaQ wiki is an ongoing process and more content and functions of the wiki will soon be realized.

Tutorials

How to find an appropriate segmentation method for my data sets?

Here you can learn how you optimize CiliaQ Preparator settings to your image. Follow us while we search for good CiliaQ Preparator settings to obtain a good segmentation of cilia and background:

• Example 1: Analysis of a 2D image acquired from cilia on cultured cells
• Example 2: Analysis of a 3D image acquired from cilia on cells in a tissue

Q&A: Questions And Answers

We will provide and extend a Questions & Answers section here to help you perform and optimize CiliaQ analysis. If you want to submit additional questions of common interest, please let us know (e.g. by e-mail to: jan.hansen (at) uni-bonn.de).

The following Q&As are available right now:

• Most of my analyzed cilia show more than one branch - does this mean tracking of the cilia is incorrect?
• How to solve that the Plugin Installer throws a java.io.FileNotFoundException during installation of the CiliaQ plugins?
• How to install a new version of a CiliaQ plugin?