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Welcome to the CiliaQ wiki! You are encountering problem with your own CiliaQ analysis or want to learn more about how to apply CiliaQ? See our Q&A section or follow one of our tutorials.
Please note that the CiliaQ wiki is a lively platform and more content and functions of the wiki will be realized.
We are currently developing video tutorials and more written tutorials - stay tuned!
Try analyzing images with CiliaQ in our example data sets, providing images with instructions on how to analyze them.
Learn how you optimize CiliaQ Preparator settings to your image by following us while we search for good CiliaQ Preparator settings to obtain a good segmentation of cilia and background:
- Example 1: Analysis of a 2D image acquired from cilia on cultured cells
- Example 2: Analysis of a 3D image acquired from cilia on cells in a tissue
Here we provide an overview about the output parameters that you generate with CiliaQ, how to retrieve them from the output file, how they are calculated, and how they can be interpreted.
We provide Questions & Answers for commonly asked questions to help you perform and optimize your CiliaQ analysis. If you want to submit additional questions of common interest, please let us know (e.g. by e-mail to: jan.hansen (at) uni-bonn.de).
Copyright (C) 2017-2023: Jan N. Hansen.
CiliaQ is part of the following publication: Jan N. Hansen, Sebastian Rassmann, Birthe Stueven, Nathalie Jurisch-Yaksi, Dagmar Wachten. CiliaQ: a simple, open-source software for automated quantification of ciliary morphology and fluorescence in 2D, 3D, and 4D images. Eur. Phys. J. E 44, 18 (2021). https://doi.org/10.1140/epje/s10189-021-00031-y