diff --git a/dockerfiles/R/Dockerfile b/dockerfiles/R/Dockerfile index 1e0cea8..0ef9f79 100644 --- a/dockerfiles/R/Dockerfile +++ b/dockerfiles/R/Dockerfile @@ -1,6 +1,6 @@ -FROM rocker/verse:4.1.1 +FROM rocker/verse:4.3.2 #Modified from here https://github.com/davismcc/r-tidybioc-img/blob/master/Dockerfile -LABEL description="Docker image containing latest R with tidyverse and Bioconductor packages" +LABEL description="Docker image containing DADA2, DECIPHER, phangorn, and latest R with tidyverse and Bioconductor packages" # Install container-wide requrements gcc, pip, zlib, libssl, make, libncurses, fortran77, g++, R RUN apt-get update && \ diff --git a/dockerfiles/R/install.R b/dockerfiles/R/install.R index 0c96907..6c20443 100644 --- a/dockerfiles/R/install.R +++ b/dockerfiles/R/install.R @@ -13,7 +13,8 @@ pkgs <- c( "DECIPHER", "digest", "biomformat", - "optparse" + "optparse", + "yaml" ) # check that desired packages are available