diff --git a/src/rhs/doc/Figures/2_species_temperature.PNG b/doc/geometry5D/collisions/Figures/2_species_temperature.PNG similarity index 100% rename from src/rhs/doc/Figures/2_species_temperature.PNG rename to doc/geometry5D/collisions/Figures/2_species_temperature.PNG diff --git a/src/rhs/doc/Figures/2_species_velocities.PNG b/doc/geometry5D/collisions/Figures/2_species_velocities.PNG similarity index 100% rename from src/rhs/doc/Figures/2_species_velocities.PNG rename to doc/geometry5D/collisions/Figures/2_species_velocities.PNG diff --git a/src/rhs/doc/Figures/isotropisation.PNG b/doc/geometry5D/collisions/Figures/isotropisation.PNG similarity index 100% rename from src/rhs/doc/Figures/isotropisation.PNG rename to doc/geometry5D/collisions/Figures/isotropisation.PNG diff --git a/src/rhs/doc/Gysela_collision.pdf b/doc/geometry5D/collisions/Gysela_collision.pdf similarity index 100% rename from src/rhs/doc/Gysela_collision.pdf rename to doc/geometry5D/collisions/Gysela_collision.pdf diff --git a/src/rhs/doc/Gysela_collision.tex b/doc/geometry5D/collisions/Gysela_collision.tex similarity index 100% rename from src/rhs/doc/Gysela_collision.tex rename to doc/geometry5D/collisions/Gysela_collision.tex diff --git a/src/geometryXVx/rhs/doc/collisions_intra_inter.pdf b/doc/geometryXVx/rhs/collisions_intra_inter.pdf similarity index 100% rename from src/geometryXVx/rhs/doc/collisions_intra_inter.pdf rename to doc/geometryXVx/rhs/collisions_intra_inter.pdf diff --git a/src/geometryXVx/rhs/doc/collisions_intra_inter.tex b/doc/geometryXVx/rhs/collisions_intra_inter.tex similarity index 100% rename from src/geometryXVx/rhs/doc/collisions_intra_inter.tex rename to doc/geometryXVx/rhs/collisions_intra_inter.tex diff --git a/src/geometryXVx/rhs/doc/kinetic_source.pdf b/doc/geometryXVx/rhs/kinetic_source.pdf similarity index 100% rename from src/geometryXVx/rhs/doc/kinetic_source.pdf rename to doc/geometryXVx/rhs/kinetic_source.pdf diff --git a/src/geometryXVx/rhs/doc/kinetic_source.tex b/doc/geometryXVx/rhs/kinetic_source.tex similarity index 100% rename from src/geometryXVx/rhs/doc/kinetic_source.tex rename to doc/geometryXVx/rhs/kinetic_source.tex diff --git a/src/geometryXVx/rhs/doc/krook_source.pdf b/doc/geometryXVx/rhs/krook_source.pdf similarity index 100% rename from src/geometryXVx/rhs/doc/krook_source.pdf rename to doc/geometryXVx/rhs/krook_source.pdf diff --git a/src/geometryXVx/rhs/doc/krook_source.tex b/doc/geometryXVx/rhs/krook_source.tex similarity index 100% rename from src/geometryXVx/rhs/doc/krook_source.tex rename to doc/geometryXVx/rhs/krook_source.tex diff --git a/src/geometryXVx/rhs/doc/library.bib b/doc/geometryXVx/rhs/library.bib similarity index 100% rename from src/geometryXVx/rhs/doc/library.bib rename to doc/geometryXVx/rhs/library.bib diff --git a/src/geometryXVx/rhs/doc/mask_tanh.pdf b/doc/geometryXVx/rhs/mask_tanh.pdf similarity index 100% rename from src/geometryXVx/rhs/doc/mask_tanh.pdf rename to doc/geometryXVx/rhs/mask_tanh.pdf diff --git a/src/geometryXVx/rhs/doc/mask_tanh.tex b/doc/geometryXVx/rhs/mask_tanh.tex similarity index 100% rename from src/geometryXVx/rhs/doc/mask_tanh.tex rename to doc/geometryXVx/rhs/mask_tanh.tex diff --git a/src/geometryXVx/rhs/collisions_inter.hpp b/src/geometryXVx/rhs/collisions_inter.hpp index 7a19d1d03..4f770a949 100644 --- a/src/geometryXVx/rhs/collisions_inter.hpp +++ b/src/geometryXVx/rhs/collisions_inter.hpp @@ -18,7 +18,7 @@ * function of different species. It is solved using a explicit time * integrator (RK2 for instance). * - * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/src/geometryXVx/rhs/doc/collisions_intra_inter.pdf). + * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/doc/geometryXVx/collisions_intra_inter.pdf). */ class CollisionsInter : public IRightHandSide { diff --git a/src/geometryXVx/rhs/collisions_intra.hpp b/src/geometryXVx/rhs/collisions_intra.hpp index e48a41a56..2d2ba1f90 100644 --- a/src/geometryXVx/rhs/collisions_intra.hpp +++ b/src/geometryXVx/rhs/collisions_intra.hpp @@ -33,7 +33,7 @@ * that needs to be resolved at each spatial position of the simulation box. Note that this linear * system depends on the considered spatial position. * - * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/src/geometryXVx/rhs/doc/collisions_intra_inter.pdf). + * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/doc/geometryXVx/collisions_intra_inter.pdf). */ class CollisionsIntra : public IRightHandSide { diff --git a/src/geometryXVx/rhs/kinetic_source.hpp b/src/geometryXVx/rhs/kinetic_source.hpp index 79355f67d..197715f07 100644 --- a/src/geometryXVx/rhs/kinetic_source.hpp +++ b/src/geometryXVx/rhs/kinetic_source.hpp @@ -26,7 +26,7 @@ * and energy parameters are equal to one (usual case), the resulting velocity_shape * is maxwellian. * - * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/src/geometryXVx/rhs/doc/kinetic_source.pdf). + * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/doc/geometryXVx/kinetic_source.pdf). */ class KineticSource : public IRightHandSide { diff --git a/src/geometryXVx/rhs/krook_source_adaptive.hpp b/src/geometryXVx/rhs/krook_source_adaptive.hpp index d1daf42e4..165310d14 100644 --- a/src/geometryXVx/rhs/krook_source_adaptive.hpp +++ b/src/geometryXVx/rhs/krook_source_adaptive.hpp @@ -19,7 +19,7 @@ * - amplitude(electrons, x, t) = m_amplitude (density_ions(x,t) - m_density) / (density_electrons(x,t) - m_density) * so that the operator conserves locally the charge. * - * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/src/geometryXVx/rhs/doc/krook_source.pdf). + * The complete description of the operator can be found in [rhs docs](https://github.com/gyselax/gyselalibxx/blob/main/doc/geometryXVx/krook_source.pdf). */ class KrookSourceAdaptive : public IRightHandSide {