You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Allow ggsashimi to access BAMs remotely via HTTP like many other tools operating on regions of BAMs.
Usage scenario
I want to render images on my laptop so I can look at them immediately, however downloading large BAMs just to render small ranges of the BAMs.
This is inefficient of my time.
Suggest implementation
pysam can read BAMs remotely by HTTP,. however ggsashimi disallows it by checking if there is a file present. Just deleting these two lines and ggsashimi works find on HTTP URLs to indexed BAMs
if not os.path.isfile(bam):
continue
This check is also problematic as it causes ggsashimi to ignore BAMs without telling you which one is bad or why. Just let pysam generate an error.
The text was updated successfully, but these errors were encountered:
New feature
Allow ggsashimi to access BAMs remotely via HTTP like many other tools operating on regions of BAMs.
Usage scenario
I want to render images on my laptop so I can look at them immediately, however downloading large BAMs just to render small ranges of the BAMs.
This is inefficient of my time.
Suggest implementation
pysam can read BAMs remotely by HTTP,. however ggsashimi disallows it by checking if there is a file present. Just deleting these two lines and ggsashimi works find on HTTP URLs to indexed BAMs
This check is also problematic as it causes ggsashimi to ignore BAMs without telling you which one is bad or why. Just let pysam generate an error.
The text was updated successfully, but these errors were encountered: