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✓ shifting (estim-constant)/2
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✓ mark/remove duplicates
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✓ bigwig for input
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✓ shift size per sample (input column)
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❏ add estimation from MACS2
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✓ remove/make optional gt.filter for multimaps
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❏ check if ENCODE BAM files are filtered for unique alignments
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❏ use unique alignments only (gem uniq option)
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✓ run pipeline with trace (get process statistics about runtime, memory, etc.)