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DESCRIPTION
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DESCRIPTION
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Package: biomaRt
Version: 2.61.3
Title: Interface to BioMart databases (i.e. Ensembl)
License: Artistic-2.0
Description: In recent years a wealth of biological data has become available
in public data repositories. Easy access to these valuable data
resources and firm integration with data analysis is needed for
comprehensive bioinformatics data analysis. biomaRt provides an
interface to a growing collection of databases implementing the
BioMart software suite (<http://www.biomart.org>). The package enables
retrieval of large amounts of data in a uniform way without the need to
know the underlying database schemas or write complex SQL queries.
The most prominent examples of BioMart databases are maintain by Ensembl, which
provides biomaRt users direct access to a diverse set of data and enables
a wide range of powerful online queries from gene annotation to
database mining.
Authors@R: c(person("Steffen", "Durinck", role = c("aut"),
email = "[email protected]"),
person("Wolfgang", "Huber", role="aut"),
person("Sean", "Davis", role="ctb", email = "[email protected]"),
person("Francois", "Pepin", role="ctb"),
person(given = "Vince S", family = "Buffalo", role="ctb"),
person("Mike", "Smith", role=c("ctb", "cre"),
email = "[email protected]",
comment = c(ORCID = "0000-0002-7800-3848")))
Depends: methods
Imports: utils, AnnotationDbi, progress, stringr, httr2,
digest, BiocFileCache, rappdirs, xml2, curl
Suggests: BiocStyle, knitr, mockery, rmarkdown, testthat, httptest2
URL: https://github.com/grimbough/biomaRt
BugReports: https://github.com/grimbough/biomaRt/issues
VignetteBuilder: knitr
biocViews: Annotation
LazyLoad: yes
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.3.0
Collate: biomaRtClasses.R
methods-Mart.R
biomaRt.R
caching.R
ensembl.R
ensembl_wrappers.R
ensembl_ssl_settings.R
utilityFunctions.R
non-biomart-utils.R