From 3d7db059d0a79a278f539028b17c21e87bc17a6e Mon Sep 17 00:00:00 2001 From: Malachi Griffith Date: Wed, 19 Jun 2024 17:11:51 -0400 Subject: [PATCH] fix space issue --- _posts/0004-02-01-Alignment_Free_Kallisto.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_posts/0004-02-01-Alignment_Free_Kallisto.md b/_posts/0004-02-01-Alignment_Free_Kallisto.md index 469d3e8e..4ab1937e 100644 --- a/_posts/0004-02-01-Alignment_Free_Kallisto.md +++ b/_posts/0004-02-01-Alignment_Free_Kallisto.md @@ -207,7 +207,7 @@ First create the gene version of the Kallisto TPM matrix cd $RNA_HOME/expression/kallisto wget https://raw.githubusercontent.com/griffithlab/rnabio.org/master/assets/scripts/kallisto_gene_matrix.pl chmod +x kallisto_gene_matrix.pl -./kallisto_gene_matrix.pl --gtf_file = $RNA_HOME/refs/chr22_with_ERCC92.gtf --kallisto_transcript_matrix_in = transcript_tpms_all_samples.tsv --kallisto_transcript_matrix_out = gene_tpms_all_samples.tsv +./kallisto_gene_matrix.pl --gtf_file=$RNA_HOME/refs/chr22_with_ERCC92.gtf --kallisto_transcript_matrix_in=transcript_tpms_all_samples.tsv --kallisto_transcript_matrix_out=gene_tpms_all_samples.tsv column -t gene_tpms_all_samples.tsv | less -S ```