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installation problem #176

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smurph50 opened this issue May 15, 2023 · 3 comments · May be fixed by #192
Open

installation problem #176

smurph50 opened this issue May 15, 2023 · 3 comments · May be fixed by #192

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@smurph50
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When I run make after successfully running the previous commands, I get a bunch of errors. Here are the important lines. I am running Monterey 12.5 with an arm M1 Max chip. Any thoughts on how to fix this would be appreciated

/Users/me/build/regtools/src/variants/../utils/bedtools/gzstream/version:1:1: error: expected unqualified-id

/Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__threading_support:457:44: error: use of undeclared identifier '__error'

fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make[2]: *** [src/variants/CMakeFiles/variants.dir/variants_main.cc.o] Error 1
make[1]: *** [src/variants/CMakeFiles/variants.dir/all] Error 2
make: *** [all] Error
@kcotto
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kcotto commented May 18, 2023

Hi @smurph50, just wanted to let you know that I'm looking into this. I think this relates to the new Mac chips (M1/M2). Are you able to temporarily use the docker image while I troubleshoot this?

@chesi
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chesi commented Jun 21, 2023

I have the same problem. I have the new Mac chips.

@angela-tarantula
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Also can't "make" without those errors, have Mac M1 Pro

@TimD1 TimD1 mentioned this issue Sep 19, 2024
Closed
TimD1 added a commit to fulcrumgenomics/regtools that referenced this issue Sep 19, 2024
@TimD1
fix: CMake build errors on Mac resolved
435e8b8 
 - closes griffithlab#176, CMake was including `src/utils/bedtools/gzstream/version`
   as a C++ source file, when it was a simple text file containing version info
 - I moved this version info into `src/utils/bedtools/gzstream/README`
@TimD1 TimD1 linked a pull request Sep 19, 2024 that will close this issue
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4 participants
@chesi @kcotto @angela-tarantula @smurph50