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This repository was archived by the owner on Mar 20, 2020. It is now read-only.
This repository was archived by the owner on Mar 20, 2020. It is now read-only.

Roadmap: Graph Summarization #3

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@josiahseaman

Description

@josiahseaman

Implement a method of summarizing the variation inside of a graph.

  • Drop out small, uncorrelated variation as noise while preserving correlated variation and building them into haplotype blocks.
  • Iterative process of summarization for different zoom levels
  • Strategies for summarizing different types of structures are described in our Google Doc.

Prototype Progress

  • Graph Summarization figures
  • data representation prototype - collab with Toshiyuki?
  • Summarization add sequence
  • Summarization add penalties in paths
  • Utility scoring
  • Brains of Graph Summarization prototype - deterministic
  • Chaining Split Vertical haplotype blocks

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