This repository was archived by the owner on Mar 20, 2020. It is now read-only.
This repository was archived by the owner on Mar 20, 2020. It is now read-only.
Roadmap: Graph Summarization #3
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Description
Implement a method of summarizing the variation inside of a graph.
- Drop out small, uncorrelated variation as noise while preserving correlated variation and building them into haplotype blocks.
- Iterative process of summarization for different zoom levels
- Strategies for summarizing different types of structures are described in our Google Doc.
Prototype Progress
- Graph Summarization figures
- data representation prototype - collab with Toshiyuki?
- Summarization add sequence
- Summarization add penalties in paths
- Utility scoring
- Brains of Graph Summarization prototype - deterministic
- Chaining Split Vertical haplotype blocks