NAMESPACE

# Generated by roxygen2: do not edit by hand

export(countBamListInGRanges)
export(createResultTable)
export(getWindows)
export(panelcn.mops)
export(plotBoxplot)
export(runPanelcnMops)
export(splitROIs)
import(GenomicRanges)
import(IRanges)
import(S4Vectors)
importClassesFrom(cn.mops,CNVDetectionResult)
importFrom(GenomeInfoDb,sortSeqlevels)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanBamHeader)
importFrom(cn.mops,normalizeChromosomes)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,axis)
importFrom(graphics,boxplot)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(methods,new)
importFrom(utils,read.csv)
importFrom(utils,write.table)