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DESCRIPTION
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DESCRIPTION
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Package: ecoCopula
Title: Graphical Modelling and Ordination using Copulas
Version: 1.0.2
Authors@R: c(person("Gordana", "Popovic", email = "[email protected]", role = c("aut", "cre")),
person("David", "Warton", role = "ctb"), person("Francis K.C.", "Hui", role = "ctb"),
person("Michelle", "Lim", role = "ctb"))
Description: Creates 'graphs' of species associations (interactions) and ordination biplots from
co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in
Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.
Depends: R (>= 3.5.0), mvabund (>= 4.2)
Imports: glasso, plyr, sna, MASS, tweedie,
igraph, betareg, doParallel, mgcv,
glm2, ordinal, compiler, foreach, stats
License: LGPL (>= 2.1)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0),
tidyr,
ggplot2,
RColorBrewer,
ggraph,
labdsv,
tidygraph,
grDevices
VignetteBuilder: knitr
Config/testthat/edition: 3