From c838457a36dc937a0b5cadb5978c651882d3d837 Mon Sep 17 00:00:00 2001 From: pichuan Date: Mon, 3 Dec 2018 17:29:36 -0800 Subject: [PATCH] Change to "Google LLC." in headers. PiperOrigin-RevId: 223893905 --- AUTHORS | 2 +- LICENSE | 2 +- build-prereq.sh | 2 +- build_and_test.sh | 2 +- build_release_binaries.sh | 2 +- cloudbuild.yaml | 2 +- cloudbuild_CBI.yaml | 2 +- deepvariant/allelecounter.cc | 2 +- deepvariant/allelecounter.h | 2 +- deepvariant/allelecounter_test.cc | 2 +- deepvariant/call_variants.py | 2 +- deepvariant/call_variants_accelerator_test.py | 2 +- deepvariant/call_variants_test.py | 2 +- deepvariant/data_providers.py | 2 +- deepvariant/data_providers_test.py | 2 +- deepvariant/docker/build_docker_bins.sh | 2 +- deepvariant/docker/gcp_deepvariant_runner.py | 2 +- deepvariant/docker/gcp_deepvariant_runner_test.py | 2 +- deepvariant/docker/gke_cluster.py | 2 +- deepvariant/docker/gke_cluster_test.py | 2 +- deepvariant/docker/process_util.py | 2 +- deepvariant/docker/run_and_verify.sh | 2 +- deepvariant/dv_constants.py | 2 +- deepvariant/dv_vcf_constants.py | 2 +- deepvariant/dv_vcf_constants_test.py | 2 +- deepvariant/environment_tests/env_smoke_test.py | 2 +- deepvariant/environment_tests/protobuf_implementation_test.py | 2 +- deepvariant/exclude_contigs.py | 2 +- deepvariant/exclude_contigs_test.py | 2 +- deepvariant/haplotypes.py | 2 +- deepvariant/haplotypes_test.py | 2 +- deepvariant/labeler/customized_classes_labeler.py | 2 +- deepvariant/labeler/customized_classes_labeler_test.py | 2 +- deepvariant/labeler/haplotype_labeler.py | 2 +- deepvariant/labeler/haplotype_labeler_test.py | 2 +- deepvariant/labeler/labeled_examples_to_vcf.py | 2 +- deepvariant/labeler/labeled_examples_to_vcf_test.py | 2 +- deepvariant/labeler/positional_labeler.py | 2 +- deepvariant/labeler/positional_labeler_test.py | 2 +- deepvariant/labeler/variant_labeler.py | 2 +- deepvariant/labeler/variant_labeler_test.py | 2 +- deepvariant/logging_level.py | 2 +- deepvariant/make_examples.py | 2 +- deepvariant/make_examples_test.py | 2 +- deepvariant/model_eval.py | 2 +- deepvariant/model_eval_test.py | 2 +- deepvariant/model_train.py | 2 +- deepvariant/model_train_test.py | 2 +- deepvariant/modeling.py | 2 +- deepvariant/modeling_test.py | 2 +- deepvariant/pileup_image.py | 2 +- deepvariant/pileup_image_native.cc | 2 +- deepvariant/pileup_image_native.h | 2 +- deepvariant/pileup_image_test.py | 2 +- deepvariant/postprocess_variants.cc | 2 +- deepvariant/postprocess_variants.h | 2 +- deepvariant/postprocess_variants.py | 2 +- deepvariant/postprocess_variants_test.cc | 2 +- deepvariant/postprocess_variants_test.py | 2 +- deepvariant/protos/deepvariant.proto | 2 +- deepvariant/protos/realigner.proto | 2 +- deepvariant/protos/resources.proto | 2 +- deepvariant/python/allelecounter.clif | 2 +- deepvariant/python/allelecounter_wrap_test.py | 2 +- deepvariant/python/clif_converters.cc | 2 +- deepvariant/python/clif_converters.h | 2 +- deepvariant/python/pileup_image_native.clif | 2 +- deepvariant/python/postprocess_variants.clif | 2 +- deepvariant/python/variant_calling.clif | 2 +- deepvariant/python/variant_calling_wrap_test.py | 2 +- deepvariant/realigner/aligner.py | 2 +- deepvariant/realigner/aligner_test.py | 2 +- .../realigner/allele_count_linear/generate_trained_model.py | 2 +- .../allele_count_linear/generate_trained_model_test.py | 2 +- deepvariant/realigner/allele_count_linear/model_evaluation.py | 2 +- .../realigner/allele_count_linear/model_evaluation_test.py | 2 +- deepvariant/realigner/debruijn_graph.cc | 2 +- deepvariant/realigner/debruijn_graph.h | 2 +- deepvariant/realigner/fast_pass_aligner.cc | 2 +- deepvariant/realigner/fast_pass_aligner.h | 2 +- deepvariant/realigner/fast_pass_aligner_test.cc | 2 +- deepvariant/realigner/python/debruijn_graph.clif | 2 +- deepvariant/realigner/python/debruijn_graph_wrap_test.py | 2 +- deepvariant/realigner/python/fast_pass_aligner.clif | 2 +- deepvariant/realigner/python/ssw.clif | 2 +- deepvariant/realigner/python/ssw_misc_test.py | 2 +- deepvariant/realigner/python/ssw_wrap_test.py | 2 +- deepvariant/realigner/python/window_selector.clif | 2 +- deepvariant/realigner/realigner.py | 2 +- deepvariant/realigner/realigner_test.py | 2 +- deepvariant/realigner/ssw.cc | 2 +- deepvariant/realigner/ssw.h | 2 +- deepvariant/realigner/ssw_test.cc | 2 +- deepvariant/realigner/utils.py | 2 +- deepvariant/realigner/window_selector.cc | 2 +- deepvariant/realigner/window_selector.h | 2 +- deepvariant/realigner/window_selector.py | 2 +- deepvariant/realigner/window_selector_test.py | 2 +- deepvariant/resources.py | 2 +- deepvariant/resources_test.py | 2 +- deepvariant/testdata.py | 2 +- deepvariant/testing/flagsaver.py | 2 +- deepvariant/testing/tf_test_utils.py | 2 +- deepvariant/tf_utils.py | 2 +- deepvariant/tf_utils_test.py | 2 +- deepvariant/utils.cc | 2 +- deepvariant/utils.h | 2 +- deepvariant/utils_test.cc | 2 +- deepvariant/variant_caller.py | 2 +- deepvariant/variant_caller_test.py | 2 +- deepvariant/variant_calling.cc | 2 +- deepvariant/variant_calling.h | 2 +- deepvariant/variant_calling_test.cc | 2 +- deepvariant/vendor/timer.py | 2 +- deepvariant/vendor/timer_test.py | 2 +- run-prereq.sh | 2 +- scripts/run_wes_case_study_binaries.sh | 2 +- scripts/run_wes_case_study_docker.sh | 2 +- scripts/run_wgs_case_study_binaries.sh | 2 +- scripts/run_wgs_case_study_docker.sh | 2 +- settings.sh | 2 +- third_party/nucleus/__init__.py | 2 +- third_party/nucleus/io/__init__.py | 2 +- third_party/nucleus/io/bed.py | 2 +- third_party/nucleus/io/bed_reader.cc | 2 +- third_party/nucleus/io/bed_reader.h | 2 +- third_party/nucleus/io/bed_reader_test.cc | 2 +- third_party/nucleus/io/bed_test.py | 2 +- third_party/nucleus/io/bed_writer.cc | 2 +- third_party/nucleus/io/bed_writer.h | 2 +- third_party/nucleus/io/bed_writer_test.cc | 2 +- third_party/nucleus/io/bedgraph.py | 2 +- third_party/nucleus/io/bedgraph_reader.cc | 2 +- third_party/nucleus/io/bedgraph_reader.h | 2 +- third_party/nucleus/io/bedgraph_reader_test.cc | 2 +- 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third_party/nucleus/io/gff.py | 2 +- third_party/nucleus/io/gff_reader.cc | 2 +- third_party/nucleus/io/gff_reader.h | 2 +- third_party/nucleus/io/gff_reader_test.cc | 2 +- third_party/nucleus/io/gff_test.py | 2 +- third_party/nucleus/io/gff_writer.cc | 2 +- third_party/nucleus/io/gff_writer.h | 2 +- third_party/nucleus/io/gff_writer_test.cc | 2 +- third_party/nucleus/io/hts_path.cc | 2 +- third_party/nucleus/io/hts_path.h | 2 +- third_party/nucleus/io/hts_test.cc | 2 +- third_party/nucleus/io/hts_verbose.cc | 2 +- third_party/nucleus/io/hts_verbose.h | 2 +- third_party/nucleus/io/hts_verbose_test.cc | 2 +- third_party/nucleus/io/in_memory_fasta_reader.cc | 2 +- third_party/nucleus/io/in_memory_fasta_reader.h | 2 +- third_party/nucleus/io/in_memory_fasta_reader_test.cc | 2 +- third_party/nucleus/io/indexed_fasta_reader.cc | 2 +- third_party/nucleus/io/indexed_fasta_reader.h | 2 +- third_party/nucleus/io/indexed_fasta_reader_test.cc | 2 +- third_party/nucleus/io/python/__init__.py | 2 +- third_party/nucleus/io/python/bed_reader.clif | 2 +- third_party/nucleus/io/python/bed_reader_wrap_test.py | 2 +- third_party/nucleus/io/python/bed_writer.clif | 2 +- third_party/nucleus/io/python/bed_writer_wrap_test.py | 2 +- third_party/nucleus/io/python/bedgraph_reader.clif | 2 +- third_party/nucleus/io/python/bedgraph_writer.clif | 2 +- third_party/nucleus/io/python/fastq_reader.clif | 2 +- third_party/nucleus/io/python/fastq_reader_wrap_test.py | 2 +- third_party/nucleus/io/python/fastq_writer.clif | 2 +- third_party/nucleus/io/python/fastq_writer_wrap_test.py | 2 +- third_party/nucleus/io/python/gff_reader.clif | 2 +- third_party/nucleus/io/python/gff_reader_wrap_test.py | 2 +- third_party/nucleus/io/python/gff_writer.clif | 2 +- third_party/nucleus/io/python/gff_writer_wrap_test.py | 2 +- third_party/nucleus/io/python/hts_verbose.clif | 2 +- third_party/nucleus/io/python/hts_verbose_test.py | 2 +- third_party/nucleus/io/python/in_memory_fasta_reader.clif | 2 +- third_party/nucleus/io/python/indexed_fasta_reader.clif | 2 +- third_party/nucleus/io/python/reference.clif | 2 +- third_party/nucleus/io/python/reference_wrap_test.py | 2 +- third_party/nucleus/io/python/sam_reader.clif | 2 +- third_party/nucleus/io/python/sam_reader_wrap_test.py | 2 +- third_party/nucleus/io/python/sam_writer.clif | 2 +- third_party/nucleus/io/python/unindexed_fasta_reader.clif | 2 +- third_party/nucleus/io/python/vcf_reader.clif | 2 +- third_party/nucleus/io/python/vcf_reader_wrap_test.py | 2 +- third_party/nucleus/io/python/vcf_writer.clif | 2 +- third_party/nucleus/io/python/vcf_writer_wrap_test.py | 2 +- third_party/nucleus/io/reader_base.cc | 2 +- third_party/nucleus/io/reader_base.h | 2 +- third_party/nucleus/io/reader_base_test.cc | 2 +- third_party/nucleus/io/reference.cc | 2 +- third_party/nucleus/io/reference.h | 2 +- third_party/nucleus/io/reference_test.cc | 2 +- third_party/nucleus/io/reference_test.h | 2 +- third_party/nucleus/io/sam.py | 2 +- third_party/nucleus/io/sam_reader.cc | 2 +- third_party/nucleus/io/sam_reader.h | 2 +- third_party/nucleus/io/sam_reader_test.cc | 2 +- third_party/nucleus/io/sam_test.py | 2 +- third_party/nucleus/io/sam_utils.cc | 2 +- third_party/nucleus/io/sam_utils.h | 2 +- third_party/nucleus/io/sam_utils_test.cc | 2 +- third_party/nucleus/io/sam_writer.cc | 2 +- third_party/nucleus/io/sam_writer.h | 2 +- third_party/nucleus/io/sam_writer_test.cc | 2 +- third_party/nucleus/io/text_io_test.cc | 2 +- third_party/nucleus/io/text_reader.cc | 2 +- third_party/nucleus/io/text_reader.h | 2 +- third_party/nucleus/io/text_writer.cc | 2 +- third_party/nucleus/io/text_writer.h | 2 +- third_party/nucleus/io/unindexed_fasta_reader.cc | 2 +- third_party/nucleus/io/unindexed_fasta_reader.h | 2 +- third_party/nucleus/io/unindexed_fasta_reader_test.cc | 2 +- third_party/nucleus/io/vcf.py | 2 +- third_party/nucleus/io/vcf_conversion.cc | 2 +- third_party/nucleus/io/vcf_conversion.h | 2 +- third_party/nucleus/io/vcf_reader.cc | 2 +- third_party/nucleus/io/vcf_reader.h | 2 +- third_party/nucleus/io/vcf_reader_test.cc | 2 +- third_party/nucleus/io/vcf_test.py | 2 +- third_party/nucleus/io/vcf_writer.cc | 2 +- third_party/nucleus/io/vcf_writer.h | 2 +- third_party/nucleus/io/vcf_writer_test.cc | 2 +- third_party/nucleus/pip_package/build_pip_package.sh | 2 +- third_party/nucleus/pip_package/setup.py | 2 +- third_party/nucleus/platform/types.h | 2 +- third_party/nucleus/protos/__init__.py | 2 +- third_party/nucleus/protos/bed.proto | 2 +- third_party/nucleus/protos/bedgraph.proto | 2 +- third_party/nucleus/protos/cigar.proto | 2 +- third_party/nucleus/protos/fasta.proto | 2 +- third_party/nucleus/protos/fastq.proto | 2 +- third_party/nucleus/protos/gff.proto | 2 +- third_party/nucleus/protos/load_descriptors.cc | 2 +- third_party/nucleus/protos/load_descriptors.py | 2 +- third_party/nucleus/protos/position.proto | 2 +- third_party/nucleus/protos/range.proto | 2 +- third_party/nucleus/protos/reads.proto | 2 +- third_party/nucleus/protos/reference.proto | 2 +- third_party/nucleus/protos/struct.proto | 2 +- third_party/nucleus/protos/variants.proto | 2 +- third_party/nucleus/testing/__init__.py | 2 +- third_party/nucleus/testing/gunit_extras_test.cc | 2 +- third_party/nucleus/testing/protobuf_implementation_test.py | 2 +- third_party/nucleus/testing/protocol-buffer-matchers.cc | 2 +- third_party/nucleus/testing/protocol-buffer-matchers.h | 2 +- third_party/nucleus/testing/test_utils.cc | 2 +- third_party/nucleus/testing/test_utils.h | 2 +- third_party/nucleus/testing/test_utils.py | 2 +- third_party/nucleus/testing/test_utils_test.py | 2 +- third_party/nucleus/util/__init__.py | 2 +- third_party/nucleus/util/cigar.py | 2 +- third_party/nucleus/util/cigar_test.py | 2 +- third_party/nucleus/util/errors.py | 2 +- third_party/nucleus/util/errors_test.py | 2 +- third_party/nucleus/util/genomics_math.py | 2 +- third_party/nucleus/util/genomics_math_test.py | 2 +- third_party/nucleus/util/io_utils.py | 2 +- third_party/nucleus/util/io_utils_test.py | 2 +- third_party/nucleus/util/math.cc | 2 +- third_party/nucleus/util/math.h | 2 +- third_party/nucleus/util/math_test.cc | 2 +- third_party/nucleus/util/port.h | 2 +- third_party/nucleus/util/proto_clif_converter.cc | 2 +- third_party/nucleus/util/proto_clif_converter.h | 2 +- third_party/nucleus/util/proto_ptr.h | 2 +- third_party/nucleus/util/proto_utils.py | 2 +- third_party/nucleus/util/python/__init__.py | 2 +- third_party/nucleus/util/python/math.clif | 2 +- third_party/nucleus/util/python/math_wrap_test.py | 2 +- third_party/nucleus/util/ranges.py | 2 +- third_party/nucleus/util/ranges_test.py | 2 +- third_party/nucleus/util/samplers.h | 2 +- third_party/nucleus/util/samplers_test.cc | 2 +- third_party/nucleus/util/sequence_utils.py | 2 +- third_party/nucleus/util/sequence_utils_test.py | 2 +- third_party/nucleus/util/struct_utils.py | 2 +- third_party/nucleus/util/struct_utils_test.py | 2 +- third_party/nucleus/util/utils.cc | 2 +- third_party/nucleus/util/utils.h | 2 +- third_party/nucleus/util/utils.py | 2 +- third_party/nucleus/util/utils_test.cc | 2 +- third_party/nucleus/util/utils_test.py | 2 +- third_party/nucleus/util/variant_utils.py | 2 +- third_party/nucleus/util/variant_utils_test.py | 2 +- third_party/nucleus/util/variantcall_utils.py | 2 +- third_party/nucleus/util/variantcall_utils_test.py | 2 +- third_party/nucleus/util/vcf_constants.py | 2 +- third_party/nucleus/util/vcf_constants_test.py | 2 +- third_party/nucleus/vendor/__init__.py | 2 +- third_party/nucleus/vendor/python/__init__.py | 2 +- third_party/nucleus/vendor/python/statusor_examples.clif | 2 +- third_party/nucleus/vendor/python/statusor_examples_test.py | 2 +- third_party/nucleus/vendor/status_matchers.h | 2 +- third_party/nucleus/vendor/statusor.h | 2 +- third_party/nucleus/vendor/statusor_clif_converters.cc | 2 +- third_party/nucleus/vendor/statusor_clif_converters.h | 2 +- third_party/nucleus/vendor/statusor_examples.h | 2 +- third_party/nucleus/vendor/statusor_test.cc | 2 +- tools/__init__.py | 2 +- tools/add_cdll_load.py | 2 +- tools/build_clif_package.sh | 2 +- tools/make_cram_testdata.sh | 2 +- tools/md_extract_cmd.sh | 2 +- tools/print_f1.py | 2 +- tools/shuffle_tfrecords_beam.py | 2 +- 324 files changed, 324 insertions(+), 324 deletions(-) diff --git a/AUTHORS b/AUTHORS index 8778c41a..6cc27b24 100644 --- a/AUTHORS +++ b/AUTHORS @@ -6,4 +6,4 @@ # Name or Organization # The email address is not required for organizations. -Google Inc. +Google LLC. diff --git a/LICENSE b/LICENSE index 4e4740ff..486de6e8 100644 --- a/LICENSE +++ b/LICENSE @@ -1,4 +1,4 @@ -Copyright 2017 Google Inc. +Copyright 2017 Google LLC. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: diff --git a/build-prereq.sh b/build-prereq.sh index 809eaac1..2e0b47f8 100755 --- a/build-prereq.sh +++ b/build-prereq.sh @@ -1,7 +1,7 @@ #!/bin/bash set -euo pipefail -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/build_and_test.sh b/build_and_test.sh index f00a8f7e..30420ee5 100755 --- a/build_and_test.sh +++ b/build_and_test.sh @@ -1,6 +1,6 @@ #!/bin/bash -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/build_release_binaries.sh b/build_release_binaries.sh index 3d279628..2cb1aab2 100755 --- a/build_release_binaries.sh +++ b/build_release_binaries.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/cloudbuild.yaml b/cloudbuild.yaml index 1d6d4f55..34c35337 100644 --- a/cloudbuild.yaml +++ b/cloudbuild.yaml @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: diff --git a/cloudbuild_CBI.yaml b/cloudbuild_CBI.yaml index 309d61d9..8d795287 100644 --- a/cloudbuild_CBI.yaml +++ b/cloudbuild_CBI.yaml @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: diff --git a/deepvariant/allelecounter.cc b/deepvariant/allelecounter.cc index 639741e0..e6ace09f 100644 --- a/deepvariant/allelecounter.cc +++ b/deepvariant/allelecounter.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/allelecounter.h b/deepvariant/allelecounter.h index 2f2641df..43f67736 100644 --- a/deepvariant/allelecounter.h +++ b/deepvariant/allelecounter.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/allelecounter_test.cc b/deepvariant/allelecounter_test.cc index 24c965cf..39d628d9 100644 --- a/deepvariant/allelecounter_test.cc +++ b/deepvariant/allelecounter_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/call_variants.py b/deepvariant/call_variants.py index 5728ecad..5ae85cb7 100644 --- a/deepvariant/call_variants.py +++ b/deepvariant/call_variants.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/call_variants_accelerator_test.py b/deepvariant/call_variants_accelerator_test.py index 6b1c0c19..1f36647f 100644 --- a/deepvariant/call_variants_accelerator_test.py +++ b/deepvariant/call_variants_accelerator_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/call_variants_test.py b/deepvariant/call_variants_test.py index 9a79fbc5..ea344b87 100644 --- a/deepvariant/call_variants_test.py +++ b/deepvariant/call_variants_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/data_providers.py b/deepvariant/data_providers.py index dff2ca19..9f1a0080 100644 --- a/deepvariant/data_providers.py +++ b/deepvariant/data_providers.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/data_providers_test.py b/deepvariant/data_providers_test.py index ccac254e..540d8eb1 100644 --- a/deepvariant/data_providers_test.py +++ b/deepvariant/data_providers_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/build_docker_bins.sh b/deepvariant/docker/build_docker_bins.sh index 977e5d62..f520ac7d 100644 --- a/deepvariant/docker/build_docker_bins.sh +++ b/deepvariant/docker/build_docker_bins.sh @@ -2,7 +2,7 @@ set -euo pipefail set -x -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/gcp_deepvariant_runner.py b/deepvariant/docker/gcp_deepvariant_runner.py index c0b3e495..bc53a277 100644 --- a/deepvariant/docker/gcp_deepvariant_runner.py +++ b/deepvariant/docker/gcp_deepvariant_runner.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/gcp_deepvariant_runner_test.py b/deepvariant/docker/gcp_deepvariant_runner_test.py index 7b643283..7810890c 100644 --- a/deepvariant/docker/gcp_deepvariant_runner_test.py +++ b/deepvariant/docker/gcp_deepvariant_runner_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/gke_cluster.py b/deepvariant/docker/gke_cluster.py index 2005b5fd..dbc652a1 100644 --- a/deepvariant/docker/gke_cluster.py +++ b/deepvariant/docker/gke_cluster.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/gke_cluster_test.py b/deepvariant/docker/gke_cluster_test.py index 7d47877a..8a7ef601 100644 --- a/deepvariant/docker/gke_cluster_test.py +++ b/deepvariant/docker/gke_cluster_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/process_util.py b/deepvariant/docker/process_util.py index 56a77334..d384acfa 100644 --- a/deepvariant/docker/process_util.py +++ b/deepvariant/docker/process_util.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/docker/run_and_verify.sh b/deepvariant/docker/run_and_verify.sh index 9903ad8e..38c409a8 100755 --- a/deepvariant/docker/run_and_verify.sh +++ b/deepvariant/docker/run_and_verify.sh @@ -1,7 +1,7 @@ #!/bin/bash set -euo pipefail -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/dv_constants.py b/deepvariant/dv_constants.py index 618b208f..da38afb6 100644 --- a/deepvariant/dv_constants.py +++ b/deepvariant/dv_constants.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/dv_vcf_constants.py b/deepvariant/dv_vcf_constants.py index 7562f355..a8cdb039 100644 --- a/deepvariant/dv_vcf_constants.py +++ b/deepvariant/dv_vcf_constants.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/dv_vcf_constants_test.py b/deepvariant/dv_vcf_constants_test.py index bc7e5f65..4c480a85 100644 --- a/deepvariant/dv_vcf_constants_test.py +++ b/deepvariant/dv_vcf_constants_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/environment_tests/env_smoke_test.py b/deepvariant/environment_tests/env_smoke_test.py index 495ded52..7f4e4e6b 100644 --- a/deepvariant/environment_tests/env_smoke_test.py +++ b/deepvariant/environment_tests/env_smoke_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/environment_tests/protobuf_implementation_test.py b/deepvariant/environment_tests/protobuf_implementation_test.py index 9cbb2128..df8ef843 100644 --- a/deepvariant/environment_tests/protobuf_implementation_test.py +++ b/deepvariant/environment_tests/protobuf_implementation_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/exclude_contigs.py b/deepvariant/exclude_contigs.py index 99796669..6319b590 100644 --- a/deepvariant/exclude_contigs.py +++ b/deepvariant/exclude_contigs.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/exclude_contigs_test.py b/deepvariant/exclude_contigs_test.py index f9e84ff6..d9889d50 100644 --- a/deepvariant/exclude_contigs_test.py +++ b/deepvariant/exclude_contigs_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/haplotypes.py b/deepvariant/haplotypes.py index df5bd6d1..b34939e3 100644 --- a/deepvariant/haplotypes.py +++ b/deepvariant/haplotypes.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/haplotypes_test.py b/deepvariant/haplotypes_test.py index fb2a5e28..3e546736 100644 --- a/deepvariant/haplotypes_test.py +++ b/deepvariant/haplotypes_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/customized_classes_labeler.py b/deepvariant/labeler/customized_classes_labeler.py index 9432f4df..b614ec8b 100644 --- a/deepvariant/labeler/customized_classes_labeler.py +++ b/deepvariant/labeler/customized_classes_labeler.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/customized_classes_labeler_test.py b/deepvariant/labeler/customized_classes_labeler_test.py index 38b23d34..cf3aec98 100644 --- a/deepvariant/labeler/customized_classes_labeler_test.py +++ b/deepvariant/labeler/customized_classes_labeler_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/haplotype_labeler.py b/deepvariant/labeler/haplotype_labeler.py index f1ca355f..951a5584 100644 --- a/deepvariant/labeler/haplotype_labeler.py +++ b/deepvariant/labeler/haplotype_labeler.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/haplotype_labeler_test.py b/deepvariant/labeler/haplotype_labeler_test.py index 2a6bceb7..75043a8f 100644 --- a/deepvariant/labeler/haplotype_labeler_test.py +++ b/deepvariant/labeler/haplotype_labeler_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/labeled_examples_to_vcf.py b/deepvariant/labeler/labeled_examples_to_vcf.py index 02b773b8..65b27d04 100644 --- a/deepvariant/labeler/labeled_examples_to_vcf.py +++ b/deepvariant/labeler/labeled_examples_to_vcf.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/labeled_examples_to_vcf_test.py b/deepvariant/labeler/labeled_examples_to_vcf_test.py index dcfe2a0c..6295ecd7 100644 --- a/deepvariant/labeler/labeled_examples_to_vcf_test.py +++ b/deepvariant/labeler/labeled_examples_to_vcf_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/positional_labeler.py b/deepvariant/labeler/positional_labeler.py index 7100a7e8..0d3de971 100644 --- a/deepvariant/labeler/positional_labeler.py +++ b/deepvariant/labeler/positional_labeler.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/positional_labeler_test.py b/deepvariant/labeler/positional_labeler_test.py index 7210ce32..becaed60 100644 --- a/deepvariant/labeler/positional_labeler_test.py +++ b/deepvariant/labeler/positional_labeler_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/variant_labeler.py b/deepvariant/labeler/variant_labeler.py index 6e34f8a4..58affb1c 100644 --- a/deepvariant/labeler/variant_labeler.py +++ b/deepvariant/labeler/variant_labeler.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/labeler/variant_labeler_test.py b/deepvariant/labeler/variant_labeler_test.py index 2427e518..c5a4e114 100644 --- a/deepvariant/labeler/variant_labeler_test.py +++ b/deepvariant/labeler/variant_labeler_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/logging_level.py b/deepvariant/logging_level.py index 1d124f19..7d2fce61 100644 --- a/deepvariant/logging_level.py +++ b/deepvariant/logging_level.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/make_examples.py b/deepvariant/make_examples.py index a9031857..19977a52 100644 --- a/deepvariant/make_examples.py +++ b/deepvariant/make_examples.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/make_examples_test.py b/deepvariant/make_examples_test.py index c83457b0..6950d296 100644 --- a/deepvariant/make_examples_test.py +++ b/deepvariant/make_examples_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/model_eval.py b/deepvariant/model_eval.py index 17bb804f..e0a4f1a7 100644 --- a/deepvariant/model_eval.py +++ b/deepvariant/model_eval.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/model_eval_test.py b/deepvariant/model_eval_test.py index 43624d2c..d8f6937f 100644 --- a/deepvariant/model_eval_test.py +++ b/deepvariant/model_eval_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/model_train.py b/deepvariant/model_train.py index c317fb6d..fb2e4605 100644 --- a/deepvariant/model_train.py +++ b/deepvariant/model_train.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/model_train_test.py b/deepvariant/model_train_test.py index a1e52a7b..72aba01a 100644 --- a/deepvariant/model_train_test.py +++ b/deepvariant/model_train_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/modeling.py b/deepvariant/modeling.py index d39c16de..61564581 100644 --- a/deepvariant/modeling.py +++ b/deepvariant/modeling.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/modeling_test.py b/deepvariant/modeling_test.py index 40ee0dd5..01ee9751 100644 --- a/deepvariant/modeling_test.py +++ b/deepvariant/modeling_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/pileup_image.py b/deepvariant/pileup_image.py index 3e0e6e2b..faf0c788 100644 --- a/deepvariant/pileup_image.py +++ b/deepvariant/pileup_image.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/pileup_image_native.cc b/deepvariant/pileup_image_native.cc index 96386aae..bc0f0b3d 100644 --- a/deepvariant/pileup_image_native.cc +++ b/deepvariant/pileup_image_native.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/pileup_image_native.h b/deepvariant/pileup_image_native.h index 937067ec..93505879 100644 --- a/deepvariant/pileup_image_native.h +++ b/deepvariant/pileup_image_native.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/pileup_image_test.py b/deepvariant/pileup_image_test.py index 7678c846..0525a1a5 100644 --- a/deepvariant/pileup_image_test.py +++ b/deepvariant/pileup_image_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/postprocess_variants.cc b/deepvariant/postprocess_variants.cc index 2f552022..65643e25 100644 --- a/deepvariant/postprocess_variants.cc +++ b/deepvariant/postprocess_variants.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/postprocess_variants.h b/deepvariant/postprocess_variants.h index 579685c2..28ef84ba 100644 --- a/deepvariant/postprocess_variants.h +++ b/deepvariant/postprocess_variants.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/postprocess_variants.py b/deepvariant/postprocess_variants.py index 96562556..957529d6 100644 --- a/deepvariant/postprocess_variants.py +++ b/deepvariant/postprocess_variants.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/postprocess_variants_test.cc b/deepvariant/postprocess_variants_test.cc index f84c6ca5..8356f5af 100644 --- a/deepvariant/postprocess_variants_test.cc +++ b/deepvariant/postprocess_variants_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/postprocess_variants_test.py b/deepvariant/postprocess_variants_test.py index f7f1694f..d8366551 100644 --- a/deepvariant/postprocess_variants_test.py +++ b/deepvariant/postprocess_variants_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/protos/deepvariant.proto b/deepvariant/protos/deepvariant.proto index 319e584b..022e92e0 100644 --- a/deepvariant/protos/deepvariant.proto +++ b/deepvariant/protos/deepvariant.proto @@ -1,4 +1,4 @@ -// Copyright 2017 Google Inc. +// Copyright 2017 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/deepvariant/protos/realigner.proto b/deepvariant/protos/realigner.proto index f5d444db..b06e52a7 100644 --- a/deepvariant/protos/realigner.proto +++ b/deepvariant/protos/realigner.proto @@ -1,4 +1,4 @@ -// Copyright 2017 Google Inc. +// Copyright 2017 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/deepvariant/protos/resources.proto b/deepvariant/protos/resources.proto index 3bdcf919..99967ac1 100644 --- a/deepvariant/protos/resources.proto +++ b/deepvariant/protos/resources.proto @@ -1,4 +1,4 @@ -// Copyright 2017 Google Inc. +// Copyright 2017 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/deepvariant/python/allelecounter.clif b/deepvariant/python/allelecounter.clif index f3224b76..7cd9202a 100644 --- a/deepvariant/python/allelecounter.clif +++ b/deepvariant/python/allelecounter.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/python/allelecounter_wrap_test.py b/deepvariant/python/allelecounter_wrap_test.py index eabc29d8..f94c8b63 100644 --- a/deepvariant/python/allelecounter_wrap_test.py +++ b/deepvariant/python/allelecounter_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/python/clif_converters.cc b/deepvariant/python/clif_converters.cc index fabdadac..8cf549cd 100644 --- a/deepvariant/python/clif_converters.cc +++ b/deepvariant/python/clif_converters.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/python/clif_converters.h b/deepvariant/python/clif_converters.h index a3dafcbb..3010a0c5 100644 --- a/deepvariant/python/clif_converters.h +++ b/deepvariant/python/clif_converters.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/python/pileup_image_native.clif b/deepvariant/python/pileup_image_native.clif index ecaa1b53..f4f2d179 100644 --- a/deepvariant/python/pileup_image_native.clif +++ b/deepvariant/python/pileup_image_native.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/python/postprocess_variants.clif b/deepvariant/python/postprocess_variants.clif index 95453127..7f4b031a 100644 --- a/deepvariant/python/postprocess_variants.clif +++ b/deepvariant/python/postprocess_variants.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/python/variant_calling.clif b/deepvariant/python/variant_calling.clif index d1020ee5..e8f8d046 100644 --- a/deepvariant/python/variant_calling.clif +++ b/deepvariant/python/variant_calling.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/python/variant_calling_wrap_test.py b/deepvariant/python/variant_calling_wrap_test.py index f7111b18..58d2821b 100644 --- a/deepvariant/python/variant_calling_wrap_test.py +++ b/deepvariant/python/variant_calling_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/aligner.py b/deepvariant/realigner/aligner.py index 22837a14..555395f9 100644 --- a/deepvariant/realigner/aligner.py +++ b/deepvariant/realigner/aligner.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/aligner_test.py b/deepvariant/realigner/aligner_test.py index ab357249..4828e249 100644 --- a/deepvariant/realigner/aligner_test.py +++ b/deepvariant/realigner/aligner_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/allele_count_linear/generate_trained_model.py b/deepvariant/realigner/allele_count_linear/generate_trained_model.py index b72d7704..987a6b7a 100644 --- a/deepvariant/realigner/allele_count_linear/generate_trained_model.py +++ b/deepvariant/realigner/allele_count_linear/generate_trained_model.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/allele_count_linear/generate_trained_model_test.py b/deepvariant/realigner/allele_count_linear/generate_trained_model_test.py index 2a3f512c..ea222f6b 100644 --- a/deepvariant/realigner/allele_count_linear/generate_trained_model_test.py +++ b/deepvariant/realigner/allele_count_linear/generate_trained_model_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/allele_count_linear/model_evaluation.py b/deepvariant/realigner/allele_count_linear/model_evaluation.py index 26c5baea..8cb8e97d 100644 --- a/deepvariant/realigner/allele_count_linear/model_evaluation.py +++ b/deepvariant/realigner/allele_count_linear/model_evaluation.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/allele_count_linear/model_evaluation_test.py b/deepvariant/realigner/allele_count_linear/model_evaluation_test.py index a6cb12b2..5ce858b2 100644 --- a/deepvariant/realigner/allele_count_linear/model_evaluation_test.py +++ b/deepvariant/realigner/allele_count_linear/model_evaluation_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/debruijn_graph.cc b/deepvariant/realigner/debruijn_graph.cc index d48bcced..36a33a74 100644 --- a/deepvariant/realigner/debruijn_graph.cc +++ b/deepvariant/realigner/debruijn_graph.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/debruijn_graph.h b/deepvariant/realigner/debruijn_graph.h index a3ed3b1d..b6f29df8 100644 --- a/deepvariant/realigner/debruijn_graph.h +++ b/deepvariant/realigner/debruijn_graph.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/fast_pass_aligner.cc b/deepvariant/realigner/fast_pass_aligner.cc index 6a165f9d..4c14ba3a 100644 --- a/deepvariant/realigner/fast_pass_aligner.cc +++ b/deepvariant/realigner/fast_pass_aligner.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/fast_pass_aligner.h b/deepvariant/realigner/fast_pass_aligner.h index a9541324..287d50be 100644 --- a/deepvariant/realigner/fast_pass_aligner.h +++ b/deepvariant/realigner/fast_pass_aligner.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/fast_pass_aligner_test.cc b/deepvariant/realigner/fast_pass_aligner_test.cc index 0ae74546..74a11a6c 100644 --- a/deepvariant/realigner/fast_pass_aligner_test.cc +++ b/deepvariant/realigner/fast_pass_aligner_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/debruijn_graph.clif b/deepvariant/realigner/python/debruijn_graph.clif index 96ccc003..9d19ae2c 100644 --- a/deepvariant/realigner/python/debruijn_graph.clif +++ b/deepvariant/realigner/python/debruijn_graph.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/debruijn_graph_wrap_test.py b/deepvariant/realigner/python/debruijn_graph_wrap_test.py index a635c90d..9d467333 100644 --- a/deepvariant/realigner/python/debruijn_graph_wrap_test.py +++ b/deepvariant/realigner/python/debruijn_graph_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/fast_pass_aligner.clif b/deepvariant/realigner/python/fast_pass_aligner.clif index e10bbddc..833bd105 100644 --- a/deepvariant/realigner/python/fast_pass_aligner.clif +++ b/deepvariant/realigner/python/fast_pass_aligner.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/ssw.clif b/deepvariant/realigner/python/ssw.clif index fef5d9f1..b7f79721 100644 --- a/deepvariant/realigner/python/ssw.clif +++ b/deepvariant/realigner/python/ssw.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/ssw_misc_test.py b/deepvariant/realigner/python/ssw_misc_test.py index eefb1123..a02c75e2 100644 --- a/deepvariant/realigner/python/ssw_misc_test.py +++ b/deepvariant/realigner/python/ssw_misc_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/ssw_wrap_test.py b/deepvariant/realigner/python/ssw_wrap_test.py index 34b0c381..3d012fb3 100644 --- a/deepvariant/realigner/python/ssw_wrap_test.py +++ b/deepvariant/realigner/python/ssw_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/python/window_selector.clif b/deepvariant/realigner/python/window_selector.clif index 52180834..57038f05 100644 --- a/deepvariant/realigner/python/window_selector.clif +++ b/deepvariant/realigner/python/window_selector.clif @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/realigner.py b/deepvariant/realigner/realigner.py index 23c94518..b98318d1 100644 --- a/deepvariant/realigner/realigner.py +++ b/deepvariant/realigner/realigner.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/realigner_test.py b/deepvariant/realigner/realigner_test.py index 15f767f7..92137c69 100644 --- a/deepvariant/realigner/realigner_test.py +++ b/deepvariant/realigner/realigner_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/ssw.cc b/deepvariant/realigner/ssw.cc index 983c415b..9be1666d 100644 --- a/deepvariant/realigner/ssw.cc +++ b/deepvariant/realigner/ssw.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/ssw.h b/deepvariant/realigner/ssw.h index e95e24d1..3acf58a3 100644 --- a/deepvariant/realigner/ssw.h +++ b/deepvariant/realigner/ssw.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/ssw_test.cc b/deepvariant/realigner/ssw_test.cc index 9a5f3834..2955e721 100644 --- a/deepvariant/realigner/ssw_test.cc +++ b/deepvariant/realigner/ssw_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/utils.py b/deepvariant/realigner/utils.py index 6535dca5..2d3b627b 100644 --- a/deepvariant/realigner/utils.py +++ b/deepvariant/realigner/utils.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/window_selector.cc b/deepvariant/realigner/window_selector.cc index 1be911e8..ff2ccd04 100644 --- a/deepvariant/realigner/window_selector.cc +++ b/deepvariant/realigner/window_selector.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/window_selector.h b/deepvariant/realigner/window_selector.h index e236b22a..070f08e5 100644 --- a/deepvariant/realigner/window_selector.h +++ b/deepvariant/realigner/window_selector.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/window_selector.py b/deepvariant/realigner/window_selector.py index 4b106f58..576acdef 100644 --- a/deepvariant/realigner/window_selector.py +++ b/deepvariant/realigner/window_selector.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/realigner/window_selector_test.py b/deepvariant/realigner/window_selector_test.py index 8511c9c7..8232eb2a 100644 --- a/deepvariant/realigner/window_selector_test.py +++ b/deepvariant/realigner/window_selector_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/resources.py b/deepvariant/resources.py index 4ab61a8c..50cdcb9b 100644 --- a/deepvariant/resources.py +++ b/deepvariant/resources.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. All Rights Reserved. +# Copyright 2017 Google LLC. All Rights Reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/resources_test.py b/deepvariant/resources_test.py index 12734982..4e4cfd5c 100644 --- a/deepvariant/resources_test.py +++ b/deepvariant/resources_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. All Rights Reserved. +# Copyright 2017 Google LLC. All Rights Reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/testdata.py b/deepvariant/testdata.py index ee778fe6..3c4b7026 100644 --- a/deepvariant/testdata.py +++ b/deepvariant/testdata.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/testing/flagsaver.py b/deepvariant/testing/flagsaver.py index aa859eb5..a5cf8a4d 100644 --- a/deepvariant/testing/flagsaver.py +++ b/deepvariant/testing/flagsaver.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/testing/tf_test_utils.py b/deepvariant/testing/tf_test_utils.py index 6ba84ecc..5174685e 100644 --- a/deepvariant/testing/tf_test_utils.py +++ b/deepvariant/testing/tf_test_utils.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/tf_utils.py b/deepvariant/tf_utils.py index 89e9df7e..27228bd8 100644 --- a/deepvariant/tf_utils.py +++ b/deepvariant/tf_utils.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/tf_utils_test.py b/deepvariant/tf_utils_test.py index 041db1ef..6b9fd3dc 100644 --- a/deepvariant/tf_utils_test.py +++ b/deepvariant/tf_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/utils.cc b/deepvariant/utils.cc index 39a51725..6cebd4b8 100644 --- a/deepvariant/utils.cc +++ b/deepvariant/utils.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/utils.h b/deepvariant/utils.h index 3b1815cb..847a7ab5 100644 --- a/deepvariant/utils.h +++ b/deepvariant/utils.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/utils_test.cc b/deepvariant/utils_test.cc index c32cbbf4..acd35e30 100644 --- a/deepvariant/utils_test.cc +++ b/deepvariant/utils_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/variant_caller.py b/deepvariant/variant_caller.py index 287f6805..d20fe40a 100644 --- a/deepvariant/variant_caller.py +++ b/deepvariant/variant_caller.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/variant_caller_test.py b/deepvariant/variant_caller_test.py index f675ae78..d40fade9 100644 --- a/deepvariant/variant_caller_test.py +++ b/deepvariant/variant_caller_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/variant_calling.cc b/deepvariant/variant_calling.cc index 68084f9e..67ae1092 100644 --- a/deepvariant/variant_calling.cc +++ b/deepvariant/variant_calling.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/variant_calling.h b/deepvariant/variant_calling.h index 5f2b84af..29a7b128 100644 --- a/deepvariant/variant_calling.h +++ b/deepvariant/variant_calling.h @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/variant_calling_test.cc b/deepvariant/variant_calling_test.cc index 7b5e30bd..81394cba 100644 --- a/deepvariant/variant_calling_test.cc +++ b/deepvariant/variant_calling_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2017 Google Inc. + * Copyright 2017 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/deepvariant/vendor/timer.py b/deepvariant/vendor/timer.py index 013b6da4..82d6959a 100644 --- a/deepvariant/vendor/timer.py +++ b/deepvariant/vendor/timer.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/deepvariant/vendor/timer_test.py b/deepvariant/vendor/timer_test.py index 347d7252..d165e4ff 100644 --- a/deepvariant/vendor/timer_test.py +++ b/deepvariant/vendor/timer_test.py @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/run-prereq.sh b/run-prereq.sh index eeb42cc3..d672ba18 100755 --- a/run-prereq.sh +++ b/run-prereq.sh @@ -1,6 +1,6 @@ #!/bin/bash -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/scripts/run_wes_case_study_binaries.sh b/scripts/run_wes_case_study_binaries.sh index cab55352..5335b53e 100755 --- a/scripts/run_wes_case_study_binaries.sh +++ b/scripts/run_wes_case_study_binaries.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. set -euo pipefail diff --git a/scripts/run_wes_case_study_docker.sh b/scripts/run_wes_case_study_docker.sh index 39ae21cb..43052057 100755 --- a/scripts/run_wes_case_study_docker.sh +++ b/scripts/run_wes_case_study_docker.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. set -euo pipefail diff --git a/scripts/run_wgs_case_study_binaries.sh b/scripts/run_wgs_case_study_binaries.sh index 92474607..bbadf52f 100755 --- a/scripts/run_wgs_case_study_binaries.sh +++ b/scripts/run_wgs_case_study_binaries.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. set -euo pipefail diff --git a/scripts/run_wgs_case_study_docker.sh b/scripts/run_wgs_case_study_docker.sh index 0042dfa4..09eafce3 100755 --- a/scripts/run_wgs_case_study_docker.sh +++ b/scripts/run_wgs_case_study_docker.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. set -euo pipefail diff --git a/settings.sh b/settings.sh index 844ece36..76bd1651 100755 --- a/settings.sh +++ b/settings.sh @@ -1,4 +1,4 @@ -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/__init__.py b/third_party/nucleus/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/__init__.py +++ b/third_party/nucleus/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/__init__.py b/third_party/nucleus/io/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/io/__init__.py +++ b/third_party/nucleus/io/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed.py b/third_party/nucleus/io/bed.py index 73d8ea78..b3869b60 100644 --- a/third_party/nucleus/io/bed.py +++ b/third_party/nucleus/io/bed.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_reader.cc b/third_party/nucleus/io/bed_reader.cc index 67d05213..dc78135d 100644 --- a/third_party/nucleus/io/bed_reader.cc +++ b/third_party/nucleus/io/bed_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_reader.h b/third_party/nucleus/io/bed_reader.h index 06e67a1c..c9b42c66 100644 --- a/third_party/nucleus/io/bed_reader.h +++ b/third_party/nucleus/io/bed_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_reader_test.cc b/third_party/nucleus/io/bed_reader_test.cc index 0ea4137d..4d25a9a3 100644 --- a/third_party/nucleus/io/bed_reader_test.cc +++ b/third_party/nucleus/io/bed_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_test.py b/third_party/nucleus/io/bed_test.py index 665a06b4..aa11aefe 100644 --- a/third_party/nucleus/io/bed_test.py +++ b/third_party/nucleus/io/bed_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_writer.cc b/third_party/nucleus/io/bed_writer.cc index c524214b..3428df27 100644 --- a/third_party/nucleus/io/bed_writer.cc +++ b/third_party/nucleus/io/bed_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_writer.h b/third_party/nucleus/io/bed_writer.h index 65572152..de527fb4 100644 --- a/third_party/nucleus/io/bed_writer.h +++ b/third_party/nucleus/io/bed_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bed_writer_test.cc b/third_party/nucleus/io/bed_writer_test.cc index 51347046..a95a439e 100644 --- a/third_party/nucleus/io/bed_writer_test.cc +++ b/third_party/nucleus/io/bed_writer_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph.py b/third_party/nucleus/io/bedgraph.py index 2a6f4b7e..e36c0ddc 100644 --- a/third_party/nucleus/io/bedgraph.py +++ b/third_party/nucleus/io/bedgraph.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_reader.cc b/third_party/nucleus/io/bedgraph_reader.cc index a8292538..50f40ac4 100644 --- a/third_party/nucleus/io/bedgraph_reader.cc +++ b/third_party/nucleus/io/bedgraph_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_reader.h b/third_party/nucleus/io/bedgraph_reader.h index 2441edd2..250545b6 100644 --- a/third_party/nucleus/io/bedgraph_reader.h +++ b/third_party/nucleus/io/bedgraph_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_reader_test.cc b/third_party/nucleus/io/bedgraph_reader_test.cc index 07a91522..c4ecaac1 100644 --- a/third_party/nucleus/io/bedgraph_reader_test.cc +++ b/third_party/nucleus/io/bedgraph_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_test.py b/third_party/nucleus/io/bedgraph_test.py index cc54f6f8..859e6850 100644 --- a/third_party/nucleus/io/bedgraph_test.py +++ b/third_party/nucleus/io/bedgraph_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_writer.cc b/third_party/nucleus/io/bedgraph_writer.cc index 1ae58031..befb5ccd 100644 --- a/third_party/nucleus/io/bedgraph_writer.cc +++ b/third_party/nucleus/io/bedgraph_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_writer.h b/third_party/nucleus/io/bedgraph_writer.h index 90f7eaec..c8c215d8 100644 --- a/third_party/nucleus/io/bedgraph_writer.h +++ b/third_party/nucleus/io/bedgraph_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/bedgraph_writer_test.cc b/third_party/nucleus/io/bedgraph_writer_test.cc index 3b647981..46eee646 100644 --- a/third_party/nucleus/io/bedgraph_writer_test.cc +++ b/third_party/nucleus/io/bedgraph_writer_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/clif_postproc.py b/third_party/nucleus/io/clif_postproc.py index 80963d93..92943d6a 100644 --- a/third_party/nucleus/io/clif_postproc.py +++ b/third_party/nucleus/io/clif_postproc.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/converter.py b/third_party/nucleus/io/converter.py index b3ed5876..e640ff83 100644 --- a/third_party/nucleus/io/converter.py +++ b/third_party/nucleus/io/converter.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/converter_test.py b/third_party/nucleus/io/converter_test.py index 9114bb84..11f9cee3 100644 --- a/third_party/nucleus/io/converter_test.py +++ b/third_party/nucleus/io/converter_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fasta.py b/third_party/nucleus/io/fasta.py index 42bf6386..502a32e8 100644 --- a/third_party/nucleus/io/fasta.py +++ b/third_party/nucleus/io/fasta.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fasta_test.py b/third_party/nucleus/io/fasta_test.py index a89f35fa..c0425514 100644 --- a/third_party/nucleus/io/fasta_test.py +++ b/third_party/nucleus/io/fasta_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq.py b/third_party/nucleus/io/fastq.py index bba06f60..f7bcb7bc 100644 --- a/third_party/nucleus/io/fastq.py +++ b/third_party/nucleus/io/fastq.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_reader.cc b/third_party/nucleus/io/fastq_reader.cc index 09a84cd1..7811d978 100644 --- a/third_party/nucleus/io/fastq_reader.cc +++ b/third_party/nucleus/io/fastq_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_reader.h b/third_party/nucleus/io/fastq_reader.h index 9f62b76b..8ea63694 100644 --- a/third_party/nucleus/io/fastq_reader.h +++ b/third_party/nucleus/io/fastq_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_reader_test.cc b/third_party/nucleus/io/fastq_reader_test.cc index b2fe3bd2..59e82f56 100644 --- a/third_party/nucleus/io/fastq_reader_test.cc +++ b/third_party/nucleus/io/fastq_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_test.py b/third_party/nucleus/io/fastq_test.py index 4c2e3e48..b564d1df 100644 --- a/third_party/nucleus/io/fastq_test.py +++ b/third_party/nucleus/io/fastq_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_writer.cc b/third_party/nucleus/io/fastq_writer.cc index eca09a37..0a9ea559 100644 --- a/third_party/nucleus/io/fastq_writer.cc +++ b/third_party/nucleus/io/fastq_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_writer.h b/third_party/nucleus/io/fastq_writer.h index 3b85940d..b299caa8 100644 --- a/third_party/nucleus/io/fastq_writer.h +++ b/third_party/nucleus/io/fastq_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/fastq_writer_test.cc b/third_party/nucleus/io/fastq_writer_test.cc index 68106e99..21208789 100644 --- a/third_party/nucleus/io/fastq_writer_test.cc +++ b/third_party/nucleus/io/fastq_writer_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/genomics_io_noplugin_test.py b/third_party/nucleus/io/genomics_io_noplugin_test.py index aa246762..7564d1d6 100644 --- a/third_party/nucleus/io/genomics_io_noplugin_test.py +++ b/third_party/nucleus/io/genomics_io_noplugin_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/genomics_reader.py b/third_party/nucleus/io/genomics_reader.py index ef3fc404..e2e661ce 100644 --- a/third_party/nucleus/io/genomics_reader.py +++ b/third_party/nucleus/io/genomics_reader.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/genomics_reader_test.py b/third_party/nucleus/io/genomics_reader_test.py index bce0832e..80041102 100644 --- a/third_party/nucleus/io/genomics_reader_test.py +++ b/third_party/nucleus/io/genomics_reader_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/genomics_writer.py b/third_party/nucleus/io/genomics_writer.py index a3ea2c92..411e0bc9 100644 --- a/third_party/nucleus/io/genomics_writer.py +++ b/third_party/nucleus/io/genomics_writer.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff.py b/third_party/nucleus/io/gff.py index 2fcbe949..fcf083f7 100644 --- a/third_party/nucleus/io/gff.py +++ b/third_party/nucleus/io/gff.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_reader.cc b/third_party/nucleus/io/gff_reader.cc index 4b4dfa6a..18f4ac26 100644 --- a/third_party/nucleus/io/gff_reader.cc +++ b/third_party/nucleus/io/gff_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_reader.h b/third_party/nucleus/io/gff_reader.h index 4c43a4d0..0005fefc 100644 --- a/third_party/nucleus/io/gff_reader.h +++ b/third_party/nucleus/io/gff_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_reader_test.cc b/third_party/nucleus/io/gff_reader_test.cc index f7e24526..30e82aaa 100644 --- a/third_party/nucleus/io/gff_reader_test.cc +++ b/third_party/nucleus/io/gff_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_test.py b/third_party/nucleus/io/gff_test.py index 052db351..3bff7aa6 100644 --- a/third_party/nucleus/io/gff_test.py +++ b/third_party/nucleus/io/gff_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_writer.cc b/third_party/nucleus/io/gff_writer.cc index 2dce40a4..e2df5916 100644 --- a/third_party/nucleus/io/gff_writer.cc +++ b/third_party/nucleus/io/gff_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_writer.h b/third_party/nucleus/io/gff_writer.h index 3d4d806b..f3743bb4 100644 --- a/third_party/nucleus/io/gff_writer.h +++ b/third_party/nucleus/io/gff_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/gff_writer_test.cc b/third_party/nucleus/io/gff_writer_test.cc index d0d47443..a1d144ed 100644 --- a/third_party/nucleus/io/gff_writer_test.cc +++ b/third_party/nucleus/io/gff_writer_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/hts_path.cc b/third_party/nucleus/io/hts_path.cc index 6884356b..1c35d4e0 100644 --- a/third_party/nucleus/io/hts_path.cc +++ b/third_party/nucleus/io/hts_path.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/hts_path.h b/third_party/nucleus/io/hts_path.h index 4204566a..1f0c619b 100644 --- a/third_party/nucleus/io/hts_path.h +++ b/third_party/nucleus/io/hts_path.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/hts_test.cc b/third_party/nucleus/io/hts_test.cc index a766a073..c26ef457 100644 --- a/third_party/nucleus/io/hts_test.cc +++ b/third_party/nucleus/io/hts_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/hts_verbose.cc b/third_party/nucleus/io/hts_verbose.cc index 45e115b7..557a6837 100644 --- a/third_party/nucleus/io/hts_verbose.cc +++ b/third_party/nucleus/io/hts_verbose.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/hts_verbose.h b/third_party/nucleus/io/hts_verbose.h index 3c2ac13e..679cb0dd 100644 --- a/third_party/nucleus/io/hts_verbose.h +++ b/third_party/nucleus/io/hts_verbose.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/hts_verbose_test.cc b/third_party/nucleus/io/hts_verbose_test.cc index ec1dd71b..45a64760 100644 --- a/third_party/nucleus/io/hts_verbose_test.cc +++ b/third_party/nucleus/io/hts_verbose_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/in_memory_fasta_reader.cc b/third_party/nucleus/io/in_memory_fasta_reader.cc index f99dd8a0..3a213422 100644 --- a/third_party/nucleus/io/in_memory_fasta_reader.cc +++ b/third_party/nucleus/io/in_memory_fasta_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/in_memory_fasta_reader.h b/third_party/nucleus/io/in_memory_fasta_reader.h index ee1dc363..a3e7dd17 100644 --- a/third_party/nucleus/io/in_memory_fasta_reader.h +++ b/third_party/nucleus/io/in_memory_fasta_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/in_memory_fasta_reader_test.cc b/third_party/nucleus/io/in_memory_fasta_reader_test.cc index 8e3b6279..b8612c6e 100644 --- a/third_party/nucleus/io/in_memory_fasta_reader_test.cc +++ b/third_party/nucleus/io/in_memory_fasta_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/indexed_fasta_reader.cc b/third_party/nucleus/io/indexed_fasta_reader.cc index 47a6f0d2..46132867 100644 --- a/third_party/nucleus/io/indexed_fasta_reader.cc +++ b/third_party/nucleus/io/indexed_fasta_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/indexed_fasta_reader.h b/third_party/nucleus/io/indexed_fasta_reader.h index 9fc9e5bb..e31bcd8e 100644 --- a/third_party/nucleus/io/indexed_fasta_reader.h +++ b/third_party/nucleus/io/indexed_fasta_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/indexed_fasta_reader_test.cc b/third_party/nucleus/io/indexed_fasta_reader_test.cc index 469586aa..b813d193 100644 --- a/third_party/nucleus/io/indexed_fasta_reader_test.cc +++ b/third_party/nucleus/io/indexed_fasta_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/__init__.py b/third_party/nucleus/io/python/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/io/python/__init__.py +++ b/third_party/nucleus/io/python/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/bed_reader.clif b/third_party/nucleus/io/python/bed_reader.clif index 05d7ae62..309e89b6 100644 --- a/third_party/nucleus/io/python/bed_reader.clif +++ b/third_party/nucleus/io/python/bed_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/bed_reader_wrap_test.py b/third_party/nucleus/io/python/bed_reader_wrap_test.py index 64bed4ac..69503d91 100644 --- a/third_party/nucleus/io/python/bed_reader_wrap_test.py +++ b/third_party/nucleus/io/python/bed_reader_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/bed_writer.clif b/third_party/nucleus/io/python/bed_writer.clif index c8b505ff..44b1210a 100644 --- a/third_party/nucleus/io/python/bed_writer.clif +++ b/third_party/nucleus/io/python/bed_writer.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/bed_writer_wrap_test.py b/third_party/nucleus/io/python/bed_writer_wrap_test.py index 60f53a78..9dc033b8 100644 --- a/third_party/nucleus/io/python/bed_writer_wrap_test.py +++ b/third_party/nucleus/io/python/bed_writer_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/bedgraph_reader.clif b/third_party/nucleus/io/python/bedgraph_reader.clif index f2827fba..84eaaa98 100644 --- a/third_party/nucleus/io/python/bedgraph_reader.clif +++ b/third_party/nucleus/io/python/bedgraph_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/bedgraph_writer.clif b/third_party/nucleus/io/python/bedgraph_writer.clif index e67f3108..26a355d1 100644 --- a/third_party/nucleus/io/python/bedgraph_writer.clif +++ b/third_party/nucleus/io/python/bedgraph_writer.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/fastq_reader.clif b/third_party/nucleus/io/python/fastq_reader.clif index 1357b9c6..c9b2a3dd 100644 --- a/third_party/nucleus/io/python/fastq_reader.clif +++ b/third_party/nucleus/io/python/fastq_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/fastq_reader_wrap_test.py b/third_party/nucleus/io/python/fastq_reader_wrap_test.py index 279ce1d6..3405a4dd 100644 --- a/third_party/nucleus/io/python/fastq_reader_wrap_test.py +++ b/third_party/nucleus/io/python/fastq_reader_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/fastq_writer.clif b/third_party/nucleus/io/python/fastq_writer.clif index b9d72cab..0c26d2b8 100644 --- a/third_party/nucleus/io/python/fastq_writer.clif +++ b/third_party/nucleus/io/python/fastq_writer.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/fastq_writer_wrap_test.py b/third_party/nucleus/io/python/fastq_writer_wrap_test.py index 5da97c47..8a8e80fd 100644 --- a/third_party/nucleus/io/python/fastq_writer_wrap_test.py +++ b/third_party/nucleus/io/python/fastq_writer_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/gff_reader.clif b/third_party/nucleus/io/python/gff_reader.clif index 0adddddd..478062ac 100644 --- a/third_party/nucleus/io/python/gff_reader.clif +++ b/third_party/nucleus/io/python/gff_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/gff_reader_wrap_test.py b/third_party/nucleus/io/python/gff_reader_wrap_test.py index a9994991..3aa911ec 100644 --- a/third_party/nucleus/io/python/gff_reader_wrap_test.py +++ b/third_party/nucleus/io/python/gff_reader_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/gff_writer.clif b/third_party/nucleus/io/python/gff_writer.clif index 72c160fc..fb043673 100644 --- a/third_party/nucleus/io/python/gff_writer.clif +++ b/third_party/nucleus/io/python/gff_writer.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/gff_writer_wrap_test.py b/third_party/nucleus/io/python/gff_writer_wrap_test.py index c24e7f5a..0b89e1f3 100644 --- a/third_party/nucleus/io/python/gff_writer_wrap_test.py +++ b/third_party/nucleus/io/python/gff_writer_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/hts_verbose.clif b/third_party/nucleus/io/python/hts_verbose.clif index 1ca8609c..ff21313e 100644 --- a/third_party/nucleus/io/python/hts_verbose.clif +++ b/third_party/nucleus/io/python/hts_verbose.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/hts_verbose_test.py b/third_party/nucleus/io/python/hts_verbose_test.py index 3c52e83c..6676e859 100644 --- a/third_party/nucleus/io/python/hts_verbose_test.py +++ b/third_party/nucleus/io/python/hts_verbose_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/in_memory_fasta_reader.clif b/third_party/nucleus/io/python/in_memory_fasta_reader.clif index 31093df8..767793b5 100644 --- a/third_party/nucleus/io/python/in_memory_fasta_reader.clif +++ b/third_party/nucleus/io/python/in_memory_fasta_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/indexed_fasta_reader.clif b/third_party/nucleus/io/python/indexed_fasta_reader.clif index 9852f447..0800ea47 100644 --- a/third_party/nucleus/io/python/indexed_fasta_reader.clif +++ b/third_party/nucleus/io/python/indexed_fasta_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/reference.clif b/third_party/nucleus/io/python/reference.clif index 598f658c..724228f6 100644 --- a/third_party/nucleus/io/python/reference.clif +++ b/third_party/nucleus/io/python/reference.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/reference_wrap_test.py b/third_party/nucleus/io/python/reference_wrap_test.py index 3e802c1a..f3d8c753 100644 --- a/third_party/nucleus/io/python/reference_wrap_test.py +++ b/third_party/nucleus/io/python/reference_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/sam_reader.clif b/third_party/nucleus/io/python/sam_reader.clif index 8424506e..5e0b8c2f 100644 --- a/third_party/nucleus/io/python/sam_reader.clif +++ b/third_party/nucleus/io/python/sam_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/sam_reader_wrap_test.py b/third_party/nucleus/io/python/sam_reader_wrap_test.py index 642b0ece..f0fc728c 100644 --- a/third_party/nucleus/io/python/sam_reader_wrap_test.py +++ b/third_party/nucleus/io/python/sam_reader_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/sam_writer.clif b/third_party/nucleus/io/python/sam_writer.clif index 22dedd6d..629dbc77 100644 --- a/third_party/nucleus/io/python/sam_writer.clif +++ b/third_party/nucleus/io/python/sam_writer.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/unindexed_fasta_reader.clif b/third_party/nucleus/io/python/unindexed_fasta_reader.clif index e5ac12be..746f8591 100644 --- a/third_party/nucleus/io/python/unindexed_fasta_reader.clif +++ b/third_party/nucleus/io/python/unindexed_fasta_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/vcf_reader.clif b/third_party/nucleus/io/python/vcf_reader.clif index 302362ab..97fba0e6 100644 --- a/third_party/nucleus/io/python/vcf_reader.clif +++ b/third_party/nucleus/io/python/vcf_reader.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/vcf_reader_wrap_test.py b/third_party/nucleus/io/python/vcf_reader_wrap_test.py index 1aabc49a..04edf130 100644 --- a/third_party/nucleus/io/python/vcf_reader_wrap_test.py +++ b/third_party/nucleus/io/python/vcf_reader_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/vcf_writer.clif b/third_party/nucleus/io/python/vcf_writer.clif index 38ffeec8..10d7ab6f 100644 --- a/third_party/nucleus/io/python/vcf_writer.clif +++ b/third_party/nucleus/io/python/vcf_writer.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/python/vcf_writer_wrap_test.py b/third_party/nucleus/io/python/vcf_writer_wrap_test.py index 2db1f92c..263a166c 100644 --- a/third_party/nucleus/io/python/vcf_writer_wrap_test.py +++ b/third_party/nucleus/io/python/vcf_writer_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reader_base.cc b/third_party/nucleus/io/reader_base.cc index b85a9130..89b333d9 100644 --- a/third_party/nucleus/io/reader_base.cc +++ b/third_party/nucleus/io/reader_base.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reader_base.h b/third_party/nucleus/io/reader_base.h index dc44819f..4ce69e17 100644 --- a/third_party/nucleus/io/reader_base.h +++ b/third_party/nucleus/io/reader_base.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reader_base_test.cc b/third_party/nucleus/io/reader_base_test.cc index caa0962a..11512500 100644 --- a/third_party/nucleus/io/reader_base_test.cc +++ b/third_party/nucleus/io/reader_base_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reference.cc b/third_party/nucleus/io/reference.cc index 15af2730..c5e06d03 100644 --- a/third_party/nucleus/io/reference.cc +++ b/third_party/nucleus/io/reference.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reference.h b/third_party/nucleus/io/reference.h index ac51d063..48583e53 100644 --- a/third_party/nucleus/io/reference.h +++ b/third_party/nucleus/io/reference.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reference_test.cc b/third_party/nucleus/io/reference_test.cc index 52875ab2..8b0f1c82 100644 --- a/third_party/nucleus/io/reference_test.cc +++ b/third_party/nucleus/io/reference_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/reference_test.h b/third_party/nucleus/io/reference_test.h index 6ae800bd..2e70ace9 100644 --- a/third_party/nucleus/io/reference_test.h +++ b/third_party/nucleus/io/reference_test.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam.py b/third_party/nucleus/io/sam.py index dae4d1b5..038932e5 100644 --- a/third_party/nucleus/io/sam.py +++ b/third_party/nucleus/io/sam.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_reader.cc b/third_party/nucleus/io/sam_reader.cc index 52e1ed85..47254505 100644 --- a/third_party/nucleus/io/sam_reader.cc +++ b/third_party/nucleus/io/sam_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_reader.h b/third_party/nucleus/io/sam_reader.h index 29e7bc60..3c76eed6 100644 --- a/third_party/nucleus/io/sam_reader.h +++ b/third_party/nucleus/io/sam_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_reader_test.cc b/third_party/nucleus/io/sam_reader_test.cc index a18357e9..920aee79 100644 --- a/third_party/nucleus/io/sam_reader_test.cc +++ b/third_party/nucleus/io/sam_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_test.py b/third_party/nucleus/io/sam_test.py index 63bdfeff..4b730a68 100644 --- a/third_party/nucleus/io/sam_test.py +++ b/third_party/nucleus/io/sam_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_utils.cc b/third_party/nucleus/io/sam_utils.cc index e5dd4baf..6e21fd4a 100644 --- a/third_party/nucleus/io/sam_utils.cc +++ b/third_party/nucleus/io/sam_utils.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_utils.h b/third_party/nucleus/io/sam_utils.h index 90fd4115..47d99ce7 100644 --- a/third_party/nucleus/io/sam_utils.h +++ b/third_party/nucleus/io/sam_utils.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_utils_test.cc b/third_party/nucleus/io/sam_utils_test.cc index 296fbcf9..b7bf1256 100644 --- a/third_party/nucleus/io/sam_utils_test.cc +++ b/third_party/nucleus/io/sam_utils_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_writer.cc b/third_party/nucleus/io/sam_writer.cc index 6d562cf8..164162b0 100644 --- a/third_party/nucleus/io/sam_writer.cc +++ b/third_party/nucleus/io/sam_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_writer.h b/third_party/nucleus/io/sam_writer.h index 6c1e1429..38408bbb 100644 --- a/third_party/nucleus/io/sam_writer.h +++ b/third_party/nucleus/io/sam_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/sam_writer_test.cc b/third_party/nucleus/io/sam_writer_test.cc index afdba9a8..dbbff9ad 100644 --- a/third_party/nucleus/io/sam_writer_test.cc +++ b/third_party/nucleus/io/sam_writer_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/text_io_test.cc b/third_party/nucleus/io/text_io_test.cc index fac0fa82..06c756a0 100644 --- a/third_party/nucleus/io/text_io_test.cc +++ b/third_party/nucleus/io/text_io_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/text_reader.cc b/third_party/nucleus/io/text_reader.cc index 24034d2d..0de53e34 100644 --- a/third_party/nucleus/io/text_reader.cc +++ b/third_party/nucleus/io/text_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/text_reader.h b/third_party/nucleus/io/text_reader.h index 26fc6acd..4ce2d52f 100644 --- a/third_party/nucleus/io/text_reader.h +++ b/third_party/nucleus/io/text_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/text_writer.cc b/third_party/nucleus/io/text_writer.cc index 94077518..3b03c144 100644 --- a/third_party/nucleus/io/text_writer.cc +++ b/third_party/nucleus/io/text_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/text_writer.h b/third_party/nucleus/io/text_writer.h index b86d93a3..e0767e1f 100644 --- a/third_party/nucleus/io/text_writer.h +++ b/third_party/nucleus/io/text_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/unindexed_fasta_reader.cc b/third_party/nucleus/io/unindexed_fasta_reader.cc index 1171830e..5b605cc2 100644 --- a/third_party/nucleus/io/unindexed_fasta_reader.cc +++ b/third_party/nucleus/io/unindexed_fasta_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/unindexed_fasta_reader.h b/third_party/nucleus/io/unindexed_fasta_reader.h index a9667bc1..15d2bda7 100644 --- a/third_party/nucleus/io/unindexed_fasta_reader.h +++ b/third_party/nucleus/io/unindexed_fasta_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/unindexed_fasta_reader_test.cc b/third_party/nucleus/io/unindexed_fasta_reader_test.cc index 3077c7df..2c0661a6 100644 --- a/third_party/nucleus/io/unindexed_fasta_reader_test.cc +++ b/third_party/nucleus/io/unindexed_fasta_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf.py b/third_party/nucleus/io/vcf.py index 308a4d98..ee7a98ab 100644 --- a/third_party/nucleus/io/vcf.py +++ b/third_party/nucleus/io/vcf.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_conversion.cc b/third_party/nucleus/io/vcf_conversion.cc index 566dd1c2..ff942962 100644 --- a/third_party/nucleus/io/vcf_conversion.cc +++ b/third_party/nucleus/io/vcf_conversion.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_conversion.h b/third_party/nucleus/io/vcf_conversion.h index af1f39d4..70992f49 100644 --- a/third_party/nucleus/io/vcf_conversion.h +++ b/third_party/nucleus/io/vcf_conversion.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_reader.cc b/third_party/nucleus/io/vcf_reader.cc index 0242e216..c2792dd6 100644 --- a/third_party/nucleus/io/vcf_reader.cc +++ b/third_party/nucleus/io/vcf_reader.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_reader.h b/third_party/nucleus/io/vcf_reader.h index b74e0dfa..2eb39eb9 100644 --- a/third_party/nucleus/io/vcf_reader.h +++ b/third_party/nucleus/io/vcf_reader.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_reader_test.cc b/third_party/nucleus/io/vcf_reader_test.cc index f1b4b2ad..730443bc 100644 --- a/third_party/nucleus/io/vcf_reader_test.cc +++ b/third_party/nucleus/io/vcf_reader_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_test.py b/third_party/nucleus/io/vcf_test.py index 305a0afd..22213fa3 100644 --- a/third_party/nucleus/io/vcf_test.py +++ b/third_party/nucleus/io/vcf_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_writer.cc b/third_party/nucleus/io/vcf_writer.cc index 4f82344b..06319981 100644 --- a/third_party/nucleus/io/vcf_writer.cc +++ b/third_party/nucleus/io/vcf_writer.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_writer.h b/third_party/nucleus/io/vcf_writer.h index fc08e305..39ff2540 100644 --- a/third_party/nucleus/io/vcf_writer.h +++ b/third_party/nucleus/io/vcf_writer.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/io/vcf_writer_test.cc b/third_party/nucleus/io/vcf_writer_test.cc index 611c2bcd..fb3b9585 100644 --- a/third_party/nucleus/io/vcf_writer_test.cc +++ b/third_party/nucleus/io/vcf_writer_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/pip_package/build_pip_package.sh b/third_party/nucleus/pip_package/build_pip_package.sh index 5298b0ac..88b5b540 100755 --- a/third_party/nucleus/pip_package/build_pip_package.sh +++ b/third_party/nucleus/pip_package/build_pip_package.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/pip_package/setup.py b/third_party/nucleus/pip_package/setup.py index eb1df8e3..b798ff37 100644 --- a/third_party/nucleus/pip_package/setup.py +++ b/third_party/nucleus/pip_package/setup.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/platform/types.h b/third_party/nucleus/platform/types.h index 92afa7d8..2f784668 100644 --- a/third_party/nucleus/platform/types.h +++ b/third_party/nucleus/platform/types.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/__init__.py b/third_party/nucleus/protos/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/protos/__init__.py +++ b/third_party/nucleus/protos/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/bed.proto b/third_party/nucleus/protos/bed.proto index c04e9be2..6c17d1af 100644 --- a/third_party/nucleus/protos/bed.proto +++ b/third_party/nucleus/protos/bed.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/bedgraph.proto b/third_party/nucleus/protos/bedgraph.proto index aedbf915..37d50742 100644 --- a/third_party/nucleus/protos/bedgraph.proto +++ b/third_party/nucleus/protos/bedgraph.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/cigar.proto b/third_party/nucleus/protos/cigar.proto index b115a308..755821df 100644 --- a/third_party/nucleus/protos/cigar.proto +++ b/third_party/nucleus/protos/cigar.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/fasta.proto b/third_party/nucleus/protos/fasta.proto index 9711f15b..e9811e30 100644 --- a/third_party/nucleus/protos/fasta.proto +++ b/third_party/nucleus/protos/fasta.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/fastq.proto b/third_party/nucleus/protos/fastq.proto index e33f4b53..9cee4c59 100644 --- a/third_party/nucleus/protos/fastq.proto +++ b/third_party/nucleus/protos/fastq.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/gff.proto b/third_party/nucleus/protos/gff.proto index 32e43892..9753dac7 100644 --- a/third_party/nucleus/protos/gff.proto +++ b/third_party/nucleus/protos/gff.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/load_descriptors.cc b/third_party/nucleus/protos/load_descriptors.cc index a27a3880..07a05fd2 100644 --- a/third_party/nucleus/protos/load_descriptors.cc +++ b/third_party/nucleus/protos/load_descriptors.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/load_descriptors.py b/third_party/nucleus/protos/load_descriptors.py index 2c46fd76..dfdc1f88 100644 --- a/third_party/nucleus/protos/load_descriptors.py +++ b/third_party/nucleus/protos/load_descriptors.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/position.proto b/third_party/nucleus/protos/position.proto index 1866657f..abb22f02 100644 --- a/third_party/nucleus/protos/position.proto +++ b/third_party/nucleus/protos/position.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/range.proto b/third_party/nucleus/protos/range.proto index 9007aacc..e95d899f 100644 --- a/third_party/nucleus/protos/range.proto +++ b/third_party/nucleus/protos/range.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/reads.proto b/third_party/nucleus/protos/reads.proto index dd4b2b07..b365727a 100644 --- a/third_party/nucleus/protos/reads.proto +++ b/third_party/nucleus/protos/reads.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/reference.proto b/third_party/nucleus/protos/reference.proto index cf577bba..587f166c 100644 --- a/third_party/nucleus/protos/reference.proto +++ b/third_party/nucleus/protos/reference.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/struct.proto b/third_party/nucleus/protos/struct.proto index 791a00f8..df1d2324 100644 --- a/third_party/nucleus/protos/struct.proto +++ b/third_party/nucleus/protos/struct.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/protos/variants.proto b/third_party/nucleus/protos/variants.proto index 05afc68f..abb6543e 100644 --- a/third_party/nucleus/protos/variants.proto +++ b/third_party/nucleus/protos/variants.proto @@ -1,4 +1,4 @@ -// Copyright 2018 Google Inc. +// Copyright 2018 Google LLC. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/__init__.py b/third_party/nucleus/testing/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/testing/__init__.py +++ b/third_party/nucleus/testing/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/gunit_extras_test.cc b/third_party/nucleus/testing/gunit_extras_test.cc index eac15148..d162d4cd 100644 --- a/third_party/nucleus/testing/gunit_extras_test.cc +++ b/third_party/nucleus/testing/gunit_extras_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * * Redistribution and use in source and binary forms, with or without diff --git a/third_party/nucleus/testing/protobuf_implementation_test.py b/third_party/nucleus/testing/protobuf_implementation_test.py index dc779c32..2164a6a6 100644 --- a/third_party/nucleus/testing/protobuf_implementation_test.py +++ b/third_party/nucleus/testing/protobuf_implementation_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/protocol-buffer-matchers.cc b/third_party/nucleus/testing/protocol-buffer-matchers.cc index a6c0338a..0049bbae 100644 --- a/third_party/nucleus/testing/protocol-buffer-matchers.cc +++ b/third_party/nucleus/testing/protocol-buffer-matchers.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/protocol-buffer-matchers.h b/third_party/nucleus/testing/protocol-buffer-matchers.h index fb47fcb5..e35611f9 100644 --- a/third_party/nucleus/testing/protocol-buffer-matchers.h +++ b/third_party/nucleus/testing/protocol-buffer-matchers.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/test_utils.cc b/third_party/nucleus/testing/test_utils.cc index 6219eef5..ab6cdd4b 100644 --- a/third_party/nucleus/testing/test_utils.cc +++ b/third_party/nucleus/testing/test_utils.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/test_utils.h b/third_party/nucleus/testing/test_utils.h index 60b94cdd..55373221 100644 --- a/third_party/nucleus/testing/test_utils.h +++ b/third_party/nucleus/testing/test_utils.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/test_utils.py b/third_party/nucleus/testing/test_utils.py index d687f1ff..99d68d6a 100644 --- a/third_party/nucleus/testing/test_utils.py +++ b/third_party/nucleus/testing/test_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/testing/test_utils_test.py b/third_party/nucleus/testing/test_utils_test.py index 4f987ceb..f194f2cd 100644 --- a/third_party/nucleus/testing/test_utils_test.py +++ b/third_party/nucleus/testing/test_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/__init__.py b/third_party/nucleus/util/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/util/__init__.py +++ b/third_party/nucleus/util/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/cigar.py b/third_party/nucleus/util/cigar.py index 72af4b55..e3929207 100644 --- a/third_party/nucleus/util/cigar.py +++ b/third_party/nucleus/util/cigar.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/cigar_test.py b/third_party/nucleus/util/cigar_test.py index e5211065..1955071d 100644 --- a/third_party/nucleus/util/cigar_test.py +++ b/third_party/nucleus/util/cigar_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/errors.py b/third_party/nucleus/util/errors.py index 0f8d343f..d19a1fe0 100644 --- a/third_party/nucleus/util/errors.py +++ b/third_party/nucleus/util/errors.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/errors_test.py b/third_party/nucleus/util/errors_test.py index 5f5b76b4..ebda455d 100644 --- a/third_party/nucleus/util/errors_test.py +++ b/third_party/nucleus/util/errors_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/genomics_math.py b/third_party/nucleus/util/genomics_math.py index 9318f87e..56972a16 100644 --- a/third_party/nucleus/util/genomics_math.py +++ b/third_party/nucleus/util/genomics_math.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/genomics_math_test.py b/third_party/nucleus/util/genomics_math_test.py index f2a4d3df..678a858c 100644 --- a/third_party/nucleus/util/genomics_math_test.py +++ b/third_party/nucleus/util/genomics_math_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/io_utils.py b/third_party/nucleus/util/io_utils.py index 19a0f856..0490e3e1 100644 --- a/third_party/nucleus/util/io_utils.py +++ b/third_party/nucleus/util/io_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/io_utils_test.py b/third_party/nucleus/util/io_utils_test.py index 29754f6e..c4e297a0 100644 --- a/third_party/nucleus/util/io_utils_test.py +++ b/third_party/nucleus/util/io_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/math.cc b/third_party/nucleus/util/math.cc index 271f8254..a98664ce 100644 --- a/third_party/nucleus/util/math.cc +++ b/third_party/nucleus/util/math.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/math.h b/third_party/nucleus/util/math.h index f3626619..f5d188c8 100644 --- a/third_party/nucleus/util/math.h +++ b/third_party/nucleus/util/math.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/math_test.cc b/third_party/nucleus/util/math_test.cc index 4f821ad3..0b1713d4 100644 --- a/third_party/nucleus/util/math_test.cc +++ b/third_party/nucleus/util/math_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/port.h b/third_party/nucleus/util/port.h index 6fad551f..d75f1e76 100644 --- a/third_party/nucleus/util/port.h +++ b/third_party/nucleus/util/port.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/proto_clif_converter.cc b/third_party/nucleus/util/proto_clif_converter.cc index 6e4fa5ef..ed5195c4 100644 --- a/third_party/nucleus/util/proto_clif_converter.cc +++ b/third_party/nucleus/util/proto_clif_converter.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/proto_clif_converter.h b/third_party/nucleus/util/proto_clif_converter.h index 9ade5e66..b8235e3f 100644 --- a/third_party/nucleus/util/proto_clif_converter.h +++ b/third_party/nucleus/util/proto_clif_converter.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/proto_ptr.h b/third_party/nucleus/util/proto_ptr.h index 220386c1..05c0eef5 100644 --- a/third_party/nucleus/util/proto_ptr.h +++ b/third_party/nucleus/util/proto_ptr.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/proto_utils.py b/third_party/nucleus/util/proto_utils.py index 3db27469..e28daa61 100644 --- a/third_party/nucleus/util/proto_utils.py +++ b/third_party/nucleus/util/proto_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/python/__init__.py b/third_party/nucleus/util/python/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/util/python/__init__.py +++ b/third_party/nucleus/util/python/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/python/math.clif b/third_party/nucleus/util/python/math.clif index 036e2284..55d09330 100644 --- a/third_party/nucleus/util/python/math.clif +++ b/third_party/nucleus/util/python/math.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/python/math_wrap_test.py b/third_party/nucleus/util/python/math_wrap_test.py index 520bb020..56efd91c 100644 --- a/third_party/nucleus/util/python/math_wrap_test.py +++ b/third_party/nucleus/util/python/math_wrap_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/ranges.py b/third_party/nucleus/util/ranges.py index 55eb7bc6..f6eeb600 100644 --- a/third_party/nucleus/util/ranges.py +++ b/third_party/nucleus/util/ranges.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/ranges_test.py b/third_party/nucleus/util/ranges_test.py index 328f4d16..8c0eee66 100644 --- a/third_party/nucleus/util/ranges_test.py +++ b/third_party/nucleus/util/ranges_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/samplers.h b/third_party/nucleus/util/samplers.h index ed588342..c9445d52 100644 --- a/third_party/nucleus/util/samplers.h +++ b/third_party/nucleus/util/samplers.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/samplers_test.cc b/third_party/nucleus/util/samplers_test.cc index 11d7d3d5..1125ffe3 100644 --- a/third_party/nucleus/util/samplers_test.cc +++ b/third_party/nucleus/util/samplers_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/sequence_utils.py b/third_party/nucleus/util/sequence_utils.py index e6b974b2..09499d86 100644 --- a/third_party/nucleus/util/sequence_utils.py +++ b/third_party/nucleus/util/sequence_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/sequence_utils_test.py b/third_party/nucleus/util/sequence_utils_test.py index 9303c81a..a5aac8a1 100644 --- a/third_party/nucleus/util/sequence_utils_test.py +++ b/third_party/nucleus/util/sequence_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/struct_utils.py b/third_party/nucleus/util/struct_utils.py index da182044..a36337ee 100644 --- a/third_party/nucleus/util/struct_utils.py +++ b/third_party/nucleus/util/struct_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/struct_utils_test.py b/third_party/nucleus/util/struct_utils_test.py index cc655246..8d9bf2c1 100644 --- a/third_party/nucleus/util/struct_utils_test.py +++ b/third_party/nucleus/util/struct_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/utils.cc b/third_party/nucleus/util/utils.cc index 5cfc15da..af709b79 100644 --- a/third_party/nucleus/util/utils.cc +++ b/third_party/nucleus/util/utils.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/utils.h b/third_party/nucleus/util/utils.h index 5be8cbc6..91d09b34 100644 --- a/third_party/nucleus/util/utils.h +++ b/third_party/nucleus/util/utils.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/utils.py b/third_party/nucleus/util/utils.py index 98a17931..234ed72c 100644 --- a/third_party/nucleus/util/utils.py +++ b/third_party/nucleus/util/utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/utils_test.cc b/third_party/nucleus/util/utils_test.cc index 65cdfa23..ac3417f8 100644 --- a/third_party/nucleus/util/utils_test.cc +++ b/third_party/nucleus/util/utils_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/utils_test.py b/third_party/nucleus/util/utils_test.py index 0b1be51f..ced34047 100644 --- a/third_party/nucleus/util/utils_test.py +++ b/third_party/nucleus/util/utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/variant_utils.py b/third_party/nucleus/util/variant_utils.py index 849c8b9a..4f54d7b7 100644 --- a/third_party/nucleus/util/variant_utils.py +++ b/third_party/nucleus/util/variant_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/variant_utils_test.py b/third_party/nucleus/util/variant_utils_test.py index 3747024a..c3e86f72 100644 --- a/third_party/nucleus/util/variant_utils_test.py +++ b/third_party/nucleus/util/variant_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/variantcall_utils.py b/third_party/nucleus/util/variantcall_utils.py index 3ba154a0..3d867b89 100644 --- a/third_party/nucleus/util/variantcall_utils.py +++ b/third_party/nucleus/util/variantcall_utils.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/variantcall_utils_test.py b/third_party/nucleus/util/variantcall_utils_test.py index d9ec6ee4..fcf1d691 100644 --- a/third_party/nucleus/util/variantcall_utils_test.py +++ b/third_party/nucleus/util/variantcall_utils_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/vcf_constants.py b/third_party/nucleus/util/vcf_constants.py index e018a362..78ec7041 100644 --- a/third_party/nucleus/util/vcf_constants.py +++ b/third_party/nucleus/util/vcf_constants.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/util/vcf_constants_test.py b/third_party/nucleus/util/vcf_constants_test.py index 2df1d918..f8ba5b69 100644 --- a/third_party/nucleus/util/vcf_constants_test.py +++ b/third_party/nucleus/util/vcf_constants_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/__init__.py b/third_party/nucleus/vendor/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/vendor/__init__.py +++ b/third_party/nucleus/vendor/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/python/__init__.py b/third_party/nucleus/vendor/python/__init__.py index 53211159..47edf7c1 100644 --- a/third_party/nucleus/vendor/python/__init__.py +++ b/third_party/nucleus/vendor/python/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/python/statusor_examples.clif b/third_party/nucleus/vendor/python/statusor_examples.clif index da0c483d..6a42e485 100644 --- a/third_party/nucleus/vendor/python/statusor_examples.clif +++ b/third_party/nucleus/vendor/python/statusor_examples.clif @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/python/statusor_examples_test.py b/third_party/nucleus/vendor/python/statusor_examples_test.py index c49be0d2..5a547169 100644 --- a/third_party/nucleus/vendor/python/statusor_examples_test.py +++ b/third_party/nucleus/vendor/python/statusor_examples_test.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/status_matchers.h b/third_party/nucleus/vendor/status_matchers.h index c8f98cb0..f65c61d9 100644 --- a/third_party/nucleus/vendor/status_matchers.h +++ b/third_party/nucleus/vendor/status_matchers.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/statusor.h b/third_party/nucleus/vendor/statusor.h index 5e2fc314..fcbe0d47 100644 --- a/third_party/nucleus/vendor/statusor.h +++ b/third_party/nucleus/vendor/statusor.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/statusor_clif_converters.cc b/third_party/nucleus/vendor/statusor_clif_converters.cc index fbc5b8b6..616dbe32 100644 --- a/third_party/nucleus/vendor/statusor_clif_converters.cc +++ b/third_party/nucleus/vendor/statusor_clif_converters.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/statusor_clif_converters.h b/third_party/nucleus/vendor/statusor_clif_converters.h index 4edcf435..b4af0f23 100644 --- a/third_party/nucleus/vendor/statusor_clif_converters.h +++ b/third_party/nucleus/vendor/statusor_clif_converters.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/statusor_examples.h b/third_party/nucleus/vendor/statusor_examples.h index c7a26c0b..28feebc1 100644 --- a/third_party/nucleus/vendor/statusor_examples.h +++ b/third_party/nucleus/vendor/statusor_examples.h @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/third_party/nucleus/vendor/statusor_test.cc b/third_party/nucleus/vendor/statusor_test.cc index 9ce4d1a9..eecedecb 100644 --- a/third_party/nucleus/vendor/statusor_test.cc +++ b/third_party/nucleus/vendor/statusor_test.cc @@ -1,5 +1,5 @@ /* - * Copyright 2018 Google Inc. + * Copyright 2018 Google LLC. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions diff --git a/tools/__init__.py b/tools/__init__.py index c9b4c411..1da43c17 100644 --- a/tools/__init__.py +++ b/tools/__init__.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/tools/add_cdll_load.py b/tools/add_cdll_load.py index ca38a826..477f248f 100755 --- a/tools/add_cdll_load.py +++ b/tools/add_cdll_load.py @@ -1,5 +1,5 @@ #!/usr/bin/python -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/tools/build_clif_package.sh b/tools/build_clif_package.sh index 1ad65932..b9049fc1 100755 --- a/tools/build_clif_package.sh +++ b/tools/build_clif_package.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2017 Google Inc. +# Copyright 2017 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/tools/make_cram_testdata.sh b/tools/make_cram_testdata.sh index 8cd54fa2..5074e08f 100755 --- a/tools/make_cram_testdata.sh +++ b/tools/make_cram_testdata.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/tools/md_extract_cmd.sh b/tools/md_extract_cmd.sh index de18dec0..350a280d 100755 --- a/tools/md_extract_cmd.sh +++ b/tools/md_extract_cmd.sh @@ -1,5 +1,5 @@ #!/bin/bash -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/tools/print_f1.py b/tools/print_f1.py index 4fba8d44..0db20124 100644 --- a/tools/print_f1.py +++ b/tools/print_f1.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions diff --git a/tools/shuffle_tfrecords_beam.py b/tools/shuffle_tfrecords_beam.py index fc53fce2..7de1c408 100644 --- a/tools/shuffle_tfrecords_beam.py +++ b/tools/shuffle_tfrecords_beam.py @@ -1,4 +1,4 @@ -# Copyright 2018 Google Inc. +# Copyright 2018 Google LLC. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions