From b748c66a3197ddb9bcef998f33f5a33bb50c5b92 Mon Sep 17 00:00:00 2001 From: shafin Date: Thu, 21 Nov 2024 15:18:41 -0800 Subject: [PATCH] Fix typo in dockerfile PiperOrigin-RevId: 698932255 --- Dockerfile.pangenome_aware_deepvariant | 34 +++++++++++++------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/Dockerfile.pangenome_aware_deepvariant b/Dockerfile.pangenome_aware_deepvariant index c9c4a639..ccacab25 100644 --- a/Dockerfile.pangenome_aware_deepvariant +++ b/Dockerfile.pangenome_aware_deepvariant @@ -117,23 +117,23 @@ RUN \ /opt/deepvariant/bin/run_pangenome_aware_deepvariant # Copy models -WORKDIR opt/models/pangenome_aware_deepvariant/wgs -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome.savedmodel/fingerprint.pb . -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome.savedmodel/saved_model.pb . -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome.savedmodel/example_info.json . -WORKDIR opt/models/pangenome_aware_deepvariant/wgs/variables -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome.savedmodel/variables/variables.data-00000-of-00001 . -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pagenome.savedmodel/variables/variables.index . -RUN chmod -R +r opt/models/pangenome_aware_deepvariant/wgs/* - -WORKDIR opt/models/pangenome_aware_deepvariant/wes -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome.savedmodel/fingerprint.pb . -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome.savedmodel/saved_model.pb . -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome.savedmodel/example_info.json . -WORKDIR opt/models/pangenome_aware_deepvariant/wes/variables -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome.savedmodel/variables/variables.data-00000-of-00001 . -ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pagenome.savedmodel/variables/variables.index . -RUN chmod -R +r opt/models/pangenome_aware_deepvariant/wes/* +WORKDIR /opt/models/pangenome_aware_deepvariant/wgs +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome.savedmodel/fingerprint.pb . +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome.savedmodel/saved_model.pb . +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome.savedmodel/example_info.json . +WORKDIR /opt/models/pangenome_aware_deepvariant/wgs/variables +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome.savedmodel/variables/variables.data-00000-of-00001 . +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wgs.pangenome.savedmodel/variables/variables.index . +RUN chmod -R +r /opt/models/pangenome_aware_deepvariant/wgs/* + +WORKDIR /opt/models/pangenome_aware_deepvariant/wes +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome.savedmodel/fingerprint.pb . +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome.savedmodel/saved_model.pb . +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome.savedmodel/example_info.json . +WORKDIR /opt/models/pangenome_aware_deepvariant/wes/variables +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome.savedmodel/variables/variables.data-00000-of-00001 . +ADD https://storage.googleapis.com/deepvariant/models/DeepVariant/${VERSION_DEEPVARIANT}/pangenome_aware_models/savedmodels/deepvariant.wes.pangenome.savedmodel/variables/variables.index . +RUN chmod -R +r /opt/models/pangenome_aware_deepvariant/wes/* ENV PATH="${PATH}":/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/pangenome_aware_deepvariant:/opt/deepvariant/bin