diff --git a/.github/ISSUE_TEMPLATE/problem_report.md b/.github/ISSUE_TEMPLATE/problem_report.md index 59c0aeb4..e15e519e 100644 --- a/.github/ISSUE_TEMPLATE/problem_report.md +++ b/.github/ISSUE_TEMPLATE/problem_report.md @@ -7,7 +7,7 @@ assignees: '' --- -**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.7/docs/FAQ.md**: +**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.8/docs/FAQ.md**: **Describe the issue:** (A clear and concise description of what the issue is.) diff --git a/.github/ISSUE_TEMPLATE/question.md b/.github/ISSUE_TEMPLATE/question.md index 90c5a6fd..0bd811bf 100644 --- a/.github/ISSUE_TEMPLATE/question.md +++ b/.github/ISSUE_TEMPLATE/question.md @@ -7,6 +7,6 @@ assignees: '' --- -**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.7/docs/FAQ.md**: +**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.8/docs/FAQ.md**: diff --git a/README.md b/README.md index 60de27fa..432e5248 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ -[![release](https://img.shields.io/badge/release-v1.7-green?logo=github)](https://github.com/google/deepvariant/releases) +[![release](https://img.shields.io/badge/release-v1.8-green?logo=github)](https://github.com/google/deepvariant/releases) [![announcements](https://img.shields.io/badge/announcements-blue)](https://groups.google.com/d/forum/deepvariant-announcements) [![blog](https://img.shields.io/badge/blog-orange)](https://goo.gl/deepvariant) @@ -71,7 +71,7 @@ Please also note: We recommend using our Docker solution. The command will look like this: ``` -BIN_VERSION="1.7.0" +BIN_VERSION="1.8.0" docker run \ -v "YOUR_INPUT_DIR":"/input" \ -v "YOUR_OUTPUT_DIR:/output" \ diff --git a/docs/FAQ.md b/docs/FAQ.md index 4c7d4e82..d5a7c296 100644 --- a/docs/FAQ.md +++ b/docs/FAQ.md @@ -156,7 +156,7 @@ container, you can `ls` inside the container. For example, using the setup shown in the README and looking inside the `/input` volume: ``` -BIN_VERSION="1.7.0" +BIN_VERSION="1.8.0" docker run \ -v "YOUR_INPUT_DIR":"/input" \ -v "YOUR_OUTPUT_DIR:/output" \ @@ -171,7 +171,7 @@ and outside the Docker container. ``` echo $HOME # see what your home directory is first. ls $HOME -BIN_VERSION="1.7.0" +BIN_VERSION="1.8.0" sudo docker run \ -v "${HOME}":"${HOME}" \ google/deepvariant:"${BIN_VERSION}" \ @@ -184,7 +184,7 @@ Since the DeepVariant v0.9 release, we recommend "[Best practices for multi-sample variant calling with DeepVariant](https://github.com/google/deepvariant/blob/r0.9/docs/trio-merge-case-study.md)". For specifically calling on duos or trios, we introduced -[DeepTrio](https://github.com/google/deepvariant/blob/r1.7/docs/deeptrio-details.md) +[DeepTrio](https://github.com/google/deepvariant/blob/r1.8/docs/deeptrio-details.md) in v1.1. ## Why am I seeing "CUDA_ERROR_NOT_INITIALIZED: initialization error" while running on GPU? diff --git a/docs/runtime-by-region.md b/docs/runtime-by-region.md index 8a607f28..c8281083 100644 --- a/docs/runtime-by-region.md +++ b/docs/runtime-by-region.md @@ -47,7 +47,7 @@ make_examples runtime by region data. Continuing from the quick start, it looks like this: ```bash -BIN_VERSION="1.7.0" # Only available in v1.1+. +BIN_VERSION="1.8.0" # Only available in v1.1+. docker run \ -v "INPUT_DIR":"/input" \ -v "OUTPUT_DIR:/output" \ diff --git a/docs/show-examples.md b/docs/show-examples.md index 0f026265..3ed8013f 100644 --- a/docs/show-examples.md +++ b/docs/show-examples.md @@ -48,7 +48,7 @@ Once you have a make_examples output tfrecord file, then you can run INPUT_DIR="${PWD}/quickstart-testdata" OUTPUT_DIR="${PWD}/quickstart-output" -BIN_VERSION="1.7.0" # show_examples is available only in version 1.0.0 and later. +BIN_VERSION="1.8.0" # show_examples is available only in version 1.0.0 and later. sudo docker run \ -v "${INPUT_DIR}":"/input" \ -v "${OUTPUT_DIR}":"/output" \