@@ -50,11 +50,13 @@ py_library(
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srcs = [],
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deps = [
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":allele_frequency" ,
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+ ":call_variants_keras_lib" ,
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":call_variants_lib" ,
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":data_providers" ,
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":dv_utils" ,
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":dv_vcf_constants" ,
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":haplotypes" ,
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+ ":keras_modeling" ,
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":make_examples_core" ,
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":make_examples_lib" ,
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":model_eval_lib" ,
@@ -170,7 +172,7 @@ cc_test(
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name = "variant_calling_test" ,
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size = "small" ,
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srcs = ["variant_calling_test.cc" ],
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- data = ["//deepvariant :testdata" ],
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+ data = [":testdata" ],
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deps = [
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":utils" ,
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":variant_calling" ,
@@ -211,8 +213,8 @@ cc_test(
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size = "small" ,
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srcs = ["variant_calling_multisample_trio_test.cc" ],
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deps = [
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+ ":utils" ,
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":variant_calling_multisample" ,
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- "//deepvariant:utils" ,
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"//deepvariant/protos:deepvariant_cc_pb2" ,
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"//third_party/nucleus/protos:variants_cc_pb2" ,
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"//third_party/nucleus/testing:cpp_test_utils" ,
@@ -668,7 +670,7 @@ py_library(
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deps = [
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# TODO: I need to break this down into smaller deps.
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":call_variants_main_lib" ,
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- "//deepvariant :dv_constants" ,
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+ ":dv_constants" ,
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],
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)
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@@ -677,13 +679,22 @@ py_binary(
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srcs = ["call_variants_keras.py" ],
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python_version = "PY3" ,
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deps = [
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- ":call_variants_main_lib" ,
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- "//deepvariant:keras_modeling" ,
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+ "call_variants_keras_lib" ,
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# TODO: Figure out why we need this dep.
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"@absl_py//absl/testing:parameterized" , # buildcleaner: keep
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],
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)
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+ py_library (
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+ name = "call_variants_keras_lib" ,
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+ srcs = ["call_variants_keras.py" ],
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+ srcs_version = "PY3" ,
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+ deps = [
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+ ":call_variants_main_lib" ,
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+ ":keras_modeling" ,
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+ ],
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+ )
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+
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py_library (
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name = "call_variants_main_lib" ,
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srcs = [
@@ -838,8 +849,8 @@ py_library(
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":logging_level" ,
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":dv_utils" ,
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":vcf_stats" ,
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- "//deepvariant :dv_constants" ,
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- "//deepvariant :haplotypes" ,
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+ ":dv_constants" ,
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+ ":haplotypes" ,
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"//deepvariant/protos:deepvariant_py_pb2" ,
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"//deepvariant/python:postprocess_variants" ,
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"//third_party/nucleus/io:fasta" ,
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