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inglencoesoftware/raw2ometiff (press backspace or delete to remove)Following on from #116, the scanning process appears to be taking an unreasonably long time when working with some HCS
datasets.
As an example, the BBBC017 dataset runs through bioformats2raw reasonably ...
DavidStirling
- Opened on Jan 15, 2024
- #124
Hello, I ll open an issue here also to cross reference my post on image.sc:
https://forum.image.sc/t/raw2ometiff-channels-timepoints-slice-output/83205
I would like to be able to split my hyperstacks ...
enhancement
Tom-TBT
- 2
- Opened on Jul 7, 2023
- #107
Hello. Is it possible to convert 32-bit floating point 3D tif images to pyramid OMETIFF for the purpose of using it in
OMERO? It seems that bioformats2raw can convert to zarr in a folder, but raw2ometiff ...
snehashis-roy
- 6
- Opened on May 24, 2023
- #104
Dear all, I have a problem while converting a .mrxs file.
I installed bioformats2raw and raw2ometiff with conda. I made a specific conda environment for these tools. As I am
working on Mac M1 pro, I used ...
ltalignani
- 7
- Opened on May 3, 2023
- #102
Tried using ./gradlew script and system installed gradle. Thanks.
~/code/raw2ometiff$ ./gradlew build
FAILURE: Build failed with an exception.
* What went wrong:
Could not initialize class org.codehaus.groovy.runtime.InvokerHelper ...
joshua-gould
- 7
- Opened on Feb 6, 2023
- #98
Hello!
Is it possible to add support for generating indexed OME TIFF file output? I d like to generate some test data for use
with the Viv system (specifically the Avivator web viewer) and this platform ...
enhancement
JohnGrime
- 3
- Opened on Jan 19, 2023
- #95
Hi,
I m trying to generate an OME TIFF image pyramid from the LuCa-7color_Scan1.qptiff example file provided at the
following address:
https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_scans/ ...
- 2
- Opened on Jan 10, 2023
- #93
After converting CMU-1-Small-Region.svs to OME-Zarr via bioformats2raw and then converting the latter to OME-TIFF by
raw2ometiff, the tile width and/or length of some pages is not a multiple of 16:
$ ...
gsakkis
- 2
- Opened on Nov 13, 2022
- #88
See https://github.com/glencoesoftware/NGFF-Converter/pull/30#issuecomment-1282168128,
https://github.com/glencoesoftware/bioformats2raw/issues/168
melissalinkert
- 1
- Opened on Oct 18, 2022
- #86
A recurring problem for some users has been that HCS datasets can produce huge OME-TIFF files which are tricky to work
with.
It d be nice to have the option to split an input zarr into a distinct .tif ...
enhancement
- 3
- Opened on Jun 15, 2022
- #79
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