diff --git a/.buildinfo b/.buildinfo index 4252baf..81d64d2 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: c640b7ea9ce96cebfdbf0c2e420a74b3 +config: 9c6946ec497e18e59f807b7b1290fbc0 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/_modules/index.html b/_modules/index.html index b1397d4..129c4fe 100644 --- a/_modules/index.html +++ b/_modules/index.html @@ -8,7 +8,7 @@ - + @@ -68,7 +68,7 @@

Related Topics

- + @@ -117,7 +117,7 @@

All modules for which code is available

©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 diff --git a/_modules/riskmapjnr/defor_cat.html b/_modules/riskmapjnr/defor_cat.html index 1b7b2ae..2fdee24 100644 --- a/_modules/riskmapjnr/defor_cat.html +++ b/_modules/riskmapjnr/defor_cat.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -311,7 +311,7 @@

Source code for riskmapjnr.defor_cat

       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
diff --git a/_modules/riskmapjnr/defrate_per_cat.html b/_modules/riskmapjnr/defrate_per_cat.html index 09c80a2..abdb70a 100644 --- a/_modules/riskmapjnr/defrate_per_cat.html +++ b/_modules/riskmapjnr/defrate_per_cat.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -291,7 +291,7 @@

Source code for riskmapjnr.defrate_per_cat

       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
diff --git a/_modules/riskmapjnr/dist_edge_threshold.html b/_modules/riskmapjnr/dist_edge_threshold.html index 7f3226f..2fe9b05 100644 --- a/_modules/riskmapjnr/dist_edge_threshold.html +++ b/_modules/riskmapjnr/dist_edge_threshold.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -520,7 +520,7 @@

Source code for riskmapjnr.dist_edge_threshold

Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16

diff --git a/_modules/riskmapjnr/local_defor_rate.html b/_modules/riskmapjnr/local_defor_rate.html index 43fdfd4..4625cd9 100644 --- a/_modules/riskmapjnr/local_defor_rate.html +++ b/_modules/riskmapjnr/local_defor_rate.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -286,7 +286,7 @@

Source code for riskmapjnr.local_defor_rate

       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
diff --git a/_modules/riskmapjnr/makemap.html b/_modules/riskmapjnr/makemap.html index 1a0a3c8..c4eb423 100644 --- a/_modules/riskmapjnr/makemap.html +++ b/_modules/riskmapjnr/makemap.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -747,7 +747,7 @@

Source code for riskmapjnr.makemap

       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
diff --git a/_modules/riskmapjnr/misc/miscellaneous.html b/_modules/riskmapjnr/misc/miscellaneous.html index 30b3fb2..509fb4a 100644 --- a/_modules/riskmapjnr/misc/miscellaneous.html +++ b/_modules/riskmapjnr/misc/miscellaneous.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -386,7 +386,7 @@

Source code for riskmapjnr.misc.miscellaneous

Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16
diff --git a/_modules/riskmapjnr/plot.html b/_modules/riskmapjnr/plot.html index bcb249e..15bc79e 100644 --- a/_modules/riskmapjnr/plot.html +++ b/_modules/riskmapjnr/plot.html @@ -8,7 +8,7 @@ - + @@ -70,7 +70,7 @@

Related Topics

- + @@ -299,7 +299,8 @@

Source code for riskmapjnr.plot

     ax1.set_frame_on(False)
     ax1.set_xticks([])
     ax1.set_yticks([])
-    plt.imshow(ov_arr, cmap=color_map, extent=extent)
+    plt.imshow(ov_arr, cmap=color_map, extent=extent,
+               resample=False, interpolation="nearest")
     if borders is not None:
         plot_layer(borders, symbol="k-", **kwargs)
     plt.axis("off")
@@ -312,7 +313,8 @@ 
Source code for riskmapjnr.plot
         )
         ax1.add_patch(z)
         ax2 = plt.subplot(222)
-        plt.imshow(ov_arr, cmap=color_map, extent=extent)
+        plt.imshow(ov_arr, cmap=color_map, extent=extent,
+                   resample=False, interpolation="nearest")
         plt.xlim(zoom[0], zoom[1])
         plt.ylim(zoom[2], zoom[3])
         ax2.set_xticks([])
@@ -406,18 +408,19 @@ 
Source code for riskmapjnr.plot
     cmax = 255.0  # float for division
     vmin = 1.0
     vmax = 65535.0  # float for division
-    # green
+    # dark green for no deforestation above dist threshold
     colors.append((rescale_zo(1, vmin, vmax),
+                   (25 / cmax, 110 / cmax, 25 / cmax, 1)))
+    # green
+    colors.append((rescale_zo(2, vmin, vmax),
                    (34 / cmax, 139 / cmax, 34 / cmax, 1)))
     # orange
-    colors.append((rescale_zo(2, vmin, vmax),
+    colors.append((rescale_zo(200, vmin, vmax),
                    (1, 165 / cmax, 0, 1)))
     # red
-    colors.append((rescale_zo(100, vmin, vmax),
+    colors.append((rescale_zo(2000, vmin, vmax),
                    (227 / cmax, 26 / cmax, 28 / cmax, 1)))
     # black
-    colors.append((rescale_zo(10000, vmin, vmax),
-                   (0, 0, 0, 1)))
     colors.append((rescale_zo(65535, vmin, vmax),
                    (0, 0, 0, 1)))
     color_map = LinearSegmentedColormap.from_list(
@@ -430,7 +433,8 @@ 
Source code for riskmapjnr.plot
     fig = plt.figure(figsize=figsize, dpi=dpi)
     plt.subplot(111)
     plt.imshow(ov_arr, cmap=color_map, extent=extent,
-               vmin=0.01, vmax=65535)
+               vmin=0.01, vmax=65535,
+               resample=False, interpolation="nearest")
     if borders is not None:
         plot_layer(borders, symbol="k-", **kwargs)
 
@@ -462,7 +466,7 @@ 
Source code for riskmapjnr.plot
       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
       
     

diff --git a/_modules/riskmapjnr/riskmapjnr.html b/_modules/riskmapjnr/riskmapjnr.html
index a5734c6..7b2a410 100644
--- a/_modules/riskmapjnr/riskmapjnr.html
+++ b/_modules/riskmapjnr/riskmapjnr.html
@@ -8,7 +8,7 @@
     
     
     
-    
+    
     
     
     
@@ -70,7 +70,7 @@ 
Related Topics

   
 
 

-
+
 
 
 
@@ -139,7 +139,7 @@ 
Source code for riskmapjnr.riskmapjnr
       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
       
     

diff --git a/_modules/riskmapjnr/set_defor_cat_zero.html b/_modules/riskmapjnr/set_defor_cat_zero.html
index d33ef8a..f1639e6 100644
--- a/_modules/riskmapjnr/set_defor_cat_zero.html
+++ b/_modules/riskmapjnr/set_defor_cat_zero.html
@@ -8,7 +8,7 @@
     
     
     
-    
+    
     
     
     
@@ -70,7 +70,7 @@ 
Related Topics

   
 
 

-
+
 
 
 
@@ -208,10 +208,13 @@ 
Source code for riskmapjnr.set_defor_cat_zero
# Data
         catzero_data = ldefrate_band.ReadAsArray(x[px], y[py], nx[px], ny[py])
         dist_data = dist_band.ReadAsArray(x[px], y[py], nx[px], ny[py])
+        # Set 1 for zero risk of deforestation (beyond distance threshold)
+        # !: dist to forest edge has positive values outside country border
+        # Also ensure NoData outside country borders (second condition)
+        catzero_data[(dist_data >= dist_thresh) & (catzero_data != 0)] = 1
         # Ensure NoData when dist_data equals zero (especially for t2)
         catzero_data[dist_data == 0] = 0
-        # Set 1 for zero risk of deforestation (beyond distance threshold)
-        catzero_data[dist_data >= dist_thresh] = 1
+        # Write data to band
         catzero_band.WriteArray(catzero_data, x[px], y[py])
 
     # Compute statistics
@@ -256,7 +259,7 @@ 
Source code for riskmapjnr.set_defor_cat_zero
Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
       
     

diff --git a/_modules/riskmapjnr/validation.html b/_modules/riskmapjnr/validation.html
index 147a9f8..7880676 100644
--- a/_modules/riskmapjnr/validation.html
+++ b/_modules/riskmapjnr/validation.html
@@ -8,7 +8,7 @@
     
     
     
-    
+    
     
     
     
@@ -70,7 +70,7 @@ 
Related Topics

   
 
 

-
+
 
 
 
@@ -359,7 +359,7 @@ 
Source code for riskmapjnr.validation
       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
       
     

diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
index 91e023d..9923c80 100644
--- a/_sources/index.rst.txt
+++ b/_sources/index.rst.txt
@@ -4,6 +4,7 @@ Table of contents
 =================
 	     
 .. toctree::
+   :hidden:
    :maxdepth: 2
 
    Home 
@@ -13,11 +14,3 @@ Table of contents
    indices
    changelog
    license
-
-Indices and tables
-==================
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`
-
diff --git a/_static/basic.css b/_static/basic.css
index 5a097f4..7d75cb9 100644
--- a/_static/basic.css
+++ b/_static/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
diff --git a/_static/doctools.js b/_static/doctools.js
index d06a71d..4d67807 100644
--- a/_static/doctools.js
+++ b/_static/doctools.js
@@ -4,7 +4,7 @@
  *
  * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
diff --git a/_static/language_data.js b/_static/language_data.js
index 250f566..367b8ed 100644
--- a/_static/language_data.js
+++ b/_static/language_data.js
@@ -5,7 +5,7 @@
  * This script contains the language-specific data used by searchtools.js,
  * namely the list of stopwords, stemmer, scorer and splitter.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -13,7 +13,7 @@
 var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
 
 
-/* Non-minified version is copied as a separate JS file, is available */
+/* Non-minified version is copied as a separate JS file, if available */
 
 /**
  * Porter Stemmer
diff --git a/_static/searchtools.js b/_static/searchtools.js
index 7918c3f..92da3f8 100644
--- a/_static/searchtools.js
+++ b/_static/searchtools.js
@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for the full-text search.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
       .then((data) => {
         if (data)
           listItem.appendChild(
-            Search.makeSearchSummary(data, searchTerms)
+            Search.makeSearchSummary(data, searchTerms, anchor)
           );
         // highlight search terms in the summary
         if (SPHINX_HIGHLIGHT_ENABLED)  // set in sphinx_highlight.js
@@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => {
     );
   else
     Search.status.innerText = _(
-      `Search finished, found ${resultCount} page(s) matching the search query.`
-    );
+      "Search finished, found ${resultCount} page(s) matching the search query."
+    ).replace('${resultCount}', resultCount);
 };
 const _displayNextItem = (
   results,
@@ -137,6 +137,22 @@ const _displayNextItem = (
   // search finished, update title and status message
   else _finishSearch(resultCount);
 };
+// Helper function used by query() to order search results.
+// Each input is an array of [docname, title, anchor, descr, score, filename].
+// Order the results by score (in opposite order of appearance, since the
+// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
+const _orderResultsByScoreThenName = (a, b) => {
+  const leftScore = a[4];
+  const rightScore = b[4];
+  if (leftScore === rightScore) {
+    // same score: sort alphabetically
+    const leftTitle = a[1].toLowerCase();
+    const rightTitle = b[1].toLowerCase();
+    if (leftTitle === rightTitle) return 0;
+    return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
+  }
+  return leftScore > rightScore ? 1 : -1;
+};
 
 /**
  * Default splitQuery function. Can be overridden in ``sphinx.search`` with a
@@ -160,13 +176,26 @@ const Search = {
   _queued_query: null,
   _pulse_status: -1,
 
-  htmlToText: (htmlString) => {
+  htmlToText: (htmlString, anchor) => {
     const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html');
-    htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() });
+    for (const removalQuery of [".headerlinks", "script", "style"]) {
+      htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() });
+    }
+    if (anchor) {
+      const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`);
+      if (anchorContent) return anchorContent.textContent;
+
+      console.warn(
+        `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.`
+      );
+    }
+
+    // if anchor not specified or not found, fall back to main content
     const docContent = htmlElement.querySelector('[role="main"]');
-    if (docContent !== undefined) return docContent.textContent;
+    if (docContent) return docContent.textContent;
+
     console.warn(
-      "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template."
+      "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template."
     );
     return "";
   },
@@ -239,16 +268,7 @@ const Search = {
     else Search.deferQuery(query);
   },
 
-  /**
-   * execute search (requires search index to be loaded)
-   */
-  query: (query) => {
-    const filenames = Search._index.filenames;
-    const docNames = Search._index.docnames;
-    const titles = Search._index.titles;
-    const allTitles = Search._index.alltitles;
-    const indexEntries = Search._index.indexentries;
-
+  _parseQuery: (query) => {
     // stem the search terms and add them to the correct list
     const stemmer = new Stemmer();
     const searchTerms = new Set();
@@ -284,16 +304,32 @@ const Search = {
     // console.info("required: ", [...searchTerms]);
     // console.info("excluded: ", [...excludedTerms]);
 
-    // array of [docname, title, anchor, descr, score, filename]
-    let results = [];
+    return [query, searchTerms, excludedTerms, highlightTerms, objectTerms];
+  },
+
+  /**
+   * execute search (requires search index to be loaded)
+   */
+  _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => {
+    const filenames = Search._index.filenames;
+    const docNames = Search._index.docnames;
+    const titles = Search._index.titles;
+    const allTitles = Search._index.alltitles;
+    const indexEntries = Search._index.indexentries;
+
+    // Collect multiple result groups to be sorted separately and then ordered.
+    // Each is an array of [docname, title, anchor, descr, score, filename].
+    const normalResults = [];
+    const nonMainIndexResults = [];
+
     _removeChildren(document.getElementById("search-progress"));
 
-    const queryLower = query.toLowerCase();
+    const queryLower = query.toLowerCase().trim();
     for (const [title, foundTitles] of Object.entries(allTitles)) {
-      if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) {
+      if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) {
         for (const [file, id] of foundTitles) {
           let score = Math.round(100 * queryLower.length / title.length)
-          results.push([
+          normalResults.push([
             docNames[file],
             titles[file] !== title ? `${titles[file]} > ${title}` : title,
             id !== null ? "#" + id : "",
@@ -308,46 +344,47 @@ const Search = {
     // search for explicit entries in index directives
     for (const [entry, foundEntries] of Object.entries(indexEntries)) {
       if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) {
-        for (const [file, id] of foundEntries) {
-          let score = Math.round(100 * queryLower.length / entry.length)
-          results.push([
+        for (const [file, id, isMain] of foundEntries) {
+          const score = Math.round(100 * queryLower.length / entry.length);
+          const result = [
             docNames[file],
             titles[file],
             id ? "#" + id : "",
             null,
             score,
             filenames[file],
-          ]);
+          ];
+          if (isMain) {
+            normalResults.push(result);
+          } else {
+            nonMainIndexResults.push(result);
+          }
         }
       }
     }
 
     // lookup as object
     objectTerms.forEach((term) =>
-      results.push(...Search.performObjectSearch(term, objectTerms))
+      normalResults.push(...Search.performObjectSearch(term, objectTerms))
     );
 
     // lookup as search terms in fulltext
-    results.push(...Search.performTermsSearch(searchTerms, excludedTerms));
+    normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms));
 
     // let the scorer override scores with a custom scoring function
-    if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item)));
-
-    // now sort the results by score (in opposite order of appearance, since the
-    // display function below uses pop() to retrieve items) and then
-    // alphabetically
-    results.sort((a, b) => {
-      const leftScore = a[4];
-      const rightScore = b[4];
-      if (leftScore === rightScore) {
-        // same score: sort alphabetically
-        const leftTitle = a[1].toLowerCase();
-        const rightTitle = b[1].toLowerCase();
-        if (leftTitle === rightTitle) return 0;
-        return leftTitle > rightTitle ? -1 : 1; // inverted is intentional
-      }
-      return leftScore > rightScore ? 1 : -1;
-    });
+    if (Scorer.score) {
+      normalResults.forEach((item) => (item[4] = Scorer.score(item)));
+      nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item)));
+    }
+
+    // Sort each group of results by score and then alphabetically by name.
+    normalResults.sort(_orderResultsByScoreThenName);
+    nonMainIndexResults.sort(_orderResultsByScoreThenName);
+
+    // Combine the result groups in (reverse) order.
+    // Non-main index entries are typically arbitrary cross-references,
+    // so display them after other results.
+    let results = [...nonMainIndexResults, ...normalResults];
 
     // remove duplicate search results
     // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept
@@ -361,7 +398,12 @@ const Search = {
       return acc;
     }, []);
 
-    results = results.reverse();
+    return results.reverse();
+  },
+
+  query: (query) => {
+    const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query);
+    const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms);
 
     // for debugging
     //Search.lastresults = results.slice();  // a copy
@@ -466,14 +508,18 @@ const Search = {
       // add support for partial matches
       if (word.length > 2) {
         const escapedWord = _escapeRegExp(word);
-        Object.keys(terms).forEach((term) => {
-          if (term.match(escapedWord) && !terms[word])
-            arr.push({ files: terms[term], score: Scorer.partialTerm });
-        });
-        Object.keys(titleTerms).forEach((term) => {
-          if (term.match(escapedWord) && !titleTerms[word])
-            arr.push({ files: titleTerms[word], score: Scorer.partialTitle });
-        });
+        if (!terms.hasOwnProperty(word)) {
+          Object.keys(terms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: terms[term], score: Scorer.partialTerm });
+          });
+        }
+        if (!titleTerms.hasOwnProperty(word)) {
+          Object.keys(titleTerms).forEach((term) => {
+            if (term.match(escapedWord))
+              arr.push({ files: titleTerms[term], score: Scorer.partialTitle });
+          });
+        }
       }
 
       // no match but word was a required one
@@ -496,9 +542,8 @@ const Search = {
 
       // create the mapping
       files.forEach((file) => {
-        if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1)
-          fileMap.get(file).push(word);
-        else fileMap.set(file, [word]);
+        if (!fileMap.has(file)) fileMap.set(file, [word]);
+        else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word);
       });
     });
 
@@ -549,8 +594,8 @@ const Search = {
    * search summary for a given text. keywords is a list
    * of stemmed words.
    */
-  makeSearchSummary: (htmlText, keywords) => {
-    const text = Search.htmlToText(htmlText);
+  makeSearchSummary: (htmlText, keywords, anchor) => {
+    const text = Search.htmlToText(htmlText, anchor);
     if (text === "") return null;
 
     const textLower = text.toLowerCase();
diff --git a/articles.html b/articles.html
index 251f5e8..34bfaff 100644
--- a/articles.html
+++ b/articles.html
@@ -9,8 +9,9 @@
     
     
     
-    
+    
     
+    
     
     
     
@@ -79,7 +80,7 @@ 
Related Topics

   
 
 

-
+
 
 
 
@@ -128,7 +129,7 @@ 
Articles
       ©2024, Ghislain Vieilledent.
       
       |
-      Powered by Sphinx 7.2.6
+      Powered by Sphinx 7.3.7
       & Alabaster 0.7.16
       
       |
diff --git a/changelog.html b/changelog.html
index 357fcce..b21b503 100644
--- a/changelog.html
+++ b/changelog.html
@@ -9,7 +9,7 @@
     
     
     
-    
+    
     
     
     
@@ -80,7 +80,7 @@ 
Related Topics
- + @@ -171,7 +171,7 @@

riskmapjnr 0.1Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/code_of_conduct.html b/code_of_conduct.html index 206ce83..b26b158 100644 --- a/code_of_conduct.html +++ b/code_of_conduct.html @@ -9,7 +9,7 @@ - + @@ -69,7 +69,7 @@

Related Topics

- + @@ -188,7 +188,7 @@

AttributionSphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/contributing.html b/contributing.html index ff5a003..7449b5b 100644 --- a/contributing.html +++ b/contributing.html @@ -9,7 +9,7 @@ - + @@ -69,7 +69,7 @@

Related Topics

- + @@ -142,7 +142,7 @@

Contribute to codeSphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/genindex.html b/genindex.html index 85e2628..1556115 100644 --- a/genindex.html +++ b/genindex.html @@ -8,7 +8,7 @@ - + @@ -68,7 +68,7 @@

Related Topics

- + @@ -246,7 +246,7 @@

V

©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 diff --git a/index.html b/index.html index 24232a7..45bc70f 100644 --- a/index.html +++ b/index.html @@ -9,8 +9,9 @@ - + + @@ -71,7 +72,7 @@

Related Topics

- + @@ -107,7 +108,8 @@

Overview spatial risk of deforestation and forest degradation following the methodology developed in the context of the Jurisdictional and Nested REDD+ (JNR) and using only a forest cover change map as input.

-riskmapjnr-example +riskmapjnr-example +

Statement of Need

@@ -255,54 +257,8 @@

Contributing

Table of contents

-

-
-

Indices and tables

- -
@@ -316,7 +272,7 @@

Indices and tablesSphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/indices.html b/indices.html index 3d404a1..a76ddf3 100644 --- a/indices.html +++ b/indices.html @@ -9,7 +9,7 @@ - + @@ -73,7 +73,7 @@

Related Topics

- + @@ -119,7 +119,7 @@

Indices and tablesSphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/license.html b/license.html index 1440d86..276af79 100644 --- a/license.html +++ b/license.html @@ -9,7 +9,7 @@ - + @@ -77,7 +77,7 @@

Related Topics

- + @@ -663,7 +663,7 @@

How to Apply These Terms to Your New ProgramsSphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/notebooks/get_started.html b/notebooks/get_started.html index d29c993..2303718 100644 --- a/notebooks/get_started.html +++ b/notebooks/get_started.html @@ -9,7 +9,7 @@ - + @@ -79,7 +79,7 @@

Related Topics

- + @@ -184,7 +184,8 @@

1.2 Forest cover chan
-../_images/fcc123.png +../_images/fcc123.png +

Forest cover change map. Deforestation on the first period (2000–2010) is in orange, deforestation on the second period (2000–2020) is in red and remaining forest (in 2020) is in green.

@@ -339,7 +340,8 @@

3.1 Deforestation ri
-../_images/perc_dist.png +../_images/perc_dist.png +

Identifying areas for which the risk of deforestation is negligible. Figure shows that more than 99% of the deforestation occurs within a distance from the forest edge ≤ 180 m. Forest areas located at a distance > 180 m from the forest edge can be considered as having no risk of being deforested.

@@ -352,7 +354,8 @@

3.2 Model comparison
-../_images/mod_comp.png +../_images/mod_comp.png +

Change in wRMSE values as a function of both window size and slicing algorithm. “ei” is the “Equal Interval” algorithm and “ea” is the “Equal Area” algorithm.

@@ -376,7 +379,8 @@

3.3 Model performanc
-../_images/pred_obs_ws5_ei.png +../_images/pred_obs_ws5_ei.png +

Relationship between observed and predicted deforestation in 1 x 1 km grid cells for the best model. The red line is the identity line. Values of the weighted root mean squared error (wRMSE, in ha) and of the number of observations (\(n\), the number of spatial cells) are reported on the graph.

@@ -398,7 +402,8 @@

3.4 Risk map of defo
-../_images/riskmap_ws5_ei_ev.png +../_images/riskmap_ws5_ei_ev.png +

Map of the deforestation risk following the JNR methodology. Forest pixels are categorized in up to 30 classes of deforestation risk. Forest pixels which belong to the class 0 (in green) are located farther than a distance of 180 m from the forest edge and have a negligible risk of being deforested.

@@ -418,7 +423,7 @@

3.4 Risk map of defo ©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/notebooks/kenya.html b/notebooks/kenya.html index da76b9d..67ce9a7 100644 --- a/notebooks/kenya.html +++ b/notebooks/kenya.html @@ -9,7 +9,7 @@ - + @@ -82,7 +82,7 @@

Related Topics

- + @@ -188,7 +188,8 @@

1.2 Forest cover chan
-../_images/fcc1231.png +../_images/fcc1231.png +

Forest cover change map. Deforestation on the first period (2010–2014) is in orange, deforestation on the second period (2014–2018) is in red and remaining forest (in 2018) is in green.

@@ -443,7 +444,8 @@

3.1 Deforestation ri
-../_images/perc_dist1.png +../_images/perc_dist1.png +

Identifying areas for which the risk of deforestation is negligible. Figure shows that more than 99% of the deforestation occurs within a distance from the forest edge ≤ 180 m. Forest areas located at a distance > 180 m from the forest edge can be considered as having no risk of being deforested.

@@ -480,7 +482,8 @@

3.3 Model performanc
-../_images/pred_obs_ws37_ei.png +../_images/pred_obs_ws37_ei.png +

Relationship between observed and predicted deforestation in 1 x 1 km grid cells for the best model. The red line is the identity line. Values of the weighted root mean squared error (wRMSE, in ha) and of the number of observations (\(n\), the number of spatial cells) are reported on the graph.

@@ -502,7 +505,8 @@

3.4 Risk map of defo
-../_images/riskmap_ws37_ei_ev.png +../_images/riskmap_ws37_ei_ev.png +

Map of the deforestation risk following the JNR methodology. Forest pixels are categorized in up to 30 classes of deforestation risk. Forest pixels which belong to the class 0 (in green) are located farther than a distance of 780 m from the forest edge and have a negligible risk of being deforested.

@@ -522,7 +526,7 @@

3.4 Risk map of defo ©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/notebooks/parallel.html b/notebooks/parallel.html index 15b3957..fd0f812 100644 --- a/notebooks/parallel.html +++ b/notebooks/parallel.html @@ -9,7 +9,7 @@ - + @@ -81,7 +81,7 @@

Related Topics

- + @@ -277,7 +277,7 @@

4 ResultsSphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/notebooks/steps.html b/notebooks/steps.html index b465538..dbd69c0 100644 --- a/notebooks/steps.html +++ b/notebooks/steps.html @@ -9,7 +9,7 @@ - + @@ -82,7 +82,7 @@

Related Topics

- + @@ -197,7 +197,8 @@

1.3 Forest cover chan
-../_images/fcc1232.png +../_images/fcc1232.png +

Forest cover change map. Deforestation on the first period (2000–2010) is in orange, deforestation on the second period (2000–2020) is in red and remaining forest (in 2020) is in green.

@@ -220,7 +221,8 @@

2 Deforestation risk
-../_images/perc_dist2.png +../_images/perc_dist2.png +

Identifying areas for which the risk of deforestation is negligible. Figure shows that more than 99% of the deforestation occurs within a distance from the forest edge ≤ 120 m. Forest areas located at a distance > 120 m from the forest edge can be considered as having no risk of being deforested.

@@ -371,7 +373,8 @@

5 Categories of defo
-../_images/riskmap.png +../_images/riskmap.png +

Map of the deforestation risk following the JNR methodology. Forest pixels are categorized in up to 30 classes of deforestation risk. Forest pixels which belong to the class 0 (in green) are located farther than a distance of 120 m from the forest edge and have a negligible risk of being deforested.

@@ -612,7 +615,8 @@

8 Validation
-../_images/pred_obs.png +../_images/pred_obs.png +

Relationship between observed and predicted deforestation in 1 x 1 km grid cells. The red line is the identity line. Values of the weighted root mean squared error (wRMSE, in ha) and of the number of observations (\(n\), the number of spatial cells) are reported on the graph.

@@ -635,7 +639,7 @@

9 Final risk map ©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/py-modindex.html b/py-modindex.html index 3869a10..64d49dc 100644 --- a/py-modindex.html +++ b/py-modindex.html @@ -8,7 +8,7 @@ - + @@ -71,7 +71,7 @@

Related Topics

- + @@ -142,7 +142,7 @@

Python Module Index

©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 diff --git a/reference.html b/reference.html index 004381c..20a41e3 100644 --- a/reference.html +++ b/reference.html @@ -9,7 +9,7 @@ - + @@ -78,7 +78,7 @@

Related Topics

- + @@ -727,7 +727,7 @@

Python APISphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 | diff --git a/search.html b/search.html index 0e7007b..ff043a8 100644 --- a/search.html +++ b/search.html @@ -9,15 +9,16 @@ - + - - + + + @@ -115,10 +116,7 @@

Search

- -
- -
+
@@ -131,7 +129,7 @@

Search

©2024, Ghislain Vieilledent. | - Powered by Sphinx 7.2.6 + Powered by Sphinx 7.3.7 & Alabaster 0.7.16 diff --git a/searchindex.js b/searchindex.js index 0be9ed8..69fb1ed 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["articles", "changelog", "code_of_conduct", "contributing", "index", "indices", "license", "notebooks/get_started", "notebooks/kenya", "notebooks/parallel", "notebooks/steps", "reference"], "filenames": ["articles.rst", "changelog.rst", "code_of_conduct.rst", "contributing.rst", "index.rst", "indices.rst", "license.rst", "notebooks/get_started.rst", "notebooks/kenya.rst", "notebooks/parallel.rst", "notebooks/steps.rst", "reference.rst"], "titles": ["Articles", "Changelog", "Code of conduct", "Community guidelines", "riskmapjnr Python package", "Indices and tables", "License", "Get Started", "Kenya", "Parallel computing", "All steps", "Python API"], "terms": {"get": [0, 4, 6, 10], "start": [0, 1, 3, 4, 6, 10, 11], "all": [0, 2, 4, 6, 7, 8, 11], "step": [0, 1, 3, 4, 6, 7, 8, 9, 11], "parallel": [0, 1, 4, 7, 8, 11], "comput": [0, 1, 4, 6, 7, 8, 10, 11], "kenya": [0, 4], "bug": [1, 3], "correct": [1, 2, 4, 6, 10, 11], "set": [1, 2, 7, 8, 9, 10, 11], "non": 1, "forest": [1, 4, 9, 11], "area": [1, 4, 6, 7, 8, 9, 10, 11], "nodata": [1, 7, 8, 10, 11], "set_defor_cat_zero": [1, 4, 10, 11], "py": 1, "thi": [1, 2, 3, 4, 7, 8, 10, 11], "version": [1, 2, 3, 4, 7, 8, 9, 10, 11], "i": [1, 2, 3, 4, 6, 7, 8, 9, 10, 11], "us": [1, 2, 7, 8, 9, 10, 11], "qgi": 1, "deforisk": 1, "plugin": 1, "improv": [1, 3, 10, 11], "document": [1, 3, 6], "make": [1, 2, 3, 6, 11], "sure": [1, 6], "fcc_file": [1, 7, 8, 9, 10, 11], "project": [1, 2, 3, 4, 11], "distanc": [1, 4, 11], "let": 1, "user": [1, 4, 10], "agg": 1, "backend": 1, "matplotlib": [1, 4, 10, 11], "when": [1, 2, 6, 9, 10, 11], "displai": [1, 6], "found": [1, 6], "close": [1, 6, 10], "join": [1, 7, 8, 10], "pool": 1, "execut": [1, 4, 6], "makemap": [1, 7, 8, 9, 11], "run": [1, 4, 6, 7, 8, 9, 10, 11], "without": [1, 2, 6], "issu": [1, 2], "sepal": 1, "remov": [1, 2, 4, 6], "unnecessari": [1, 6], "output": [1, 6, 11], "file": [1, 4, 6, 7, 8, 10, 11], "first": [1, 4, 6, 7, 8, 10, 11], "stabl": 1, "releas": [1, 3, 4, 6], "benchmark": [1, 4], "estim": [1, 4, 10, 11], "advantag": 1, "new": [1, 3, 4, 11], "tutori": [1, 3, 4, 10], "larg": [1, 4], "jurisdict": [1, 4, 10], "countri": [1, 4, 6], "annual": 1, "deforest": [1, 4, 11], "rate": [1, 4, 11], "formula": [1, 10], "valid": [1, 4, 6, 7, 8, 9, 11], "map": [1, 4, 9, 11], "period": [1, 4, 7, 8, 9, 11], "final": [1, 6], "risk": [1, 4, 6, 9, 11], "end": [1, 6, 11], "alpha": [1, 10], "packag": [1, 3, 6, 7, 8, 10, 11], "must": [1, 3, 4, 6, 10, 11], "thoroughli": 1, "test": [1, 3, 10], "In": [2, 4, 6, 10], "interest": [2, 3, 4, 6], "foster": 2, "an": [2, 4, 6, 10, 11], "open": [2, 3, 4], "welcom": [2, 6], "environ": [2, 4, 7, 8, 9, 10], "we": [2, 6, 7, 8, 9, 10, 11], "contributor": [2, 3, 4, 6], "maintain": [2, 6], "particip": 2, "commun": [2, 4, 6], "harass": 2, "free": [2, 3, 6], "experi": 2, "everyon": [2, 6], "regardless": [2, 6], "ag": 2, "bodi": [2, 6], "size": [2, 4, 7, 8, 9, 10, 11], "disabl": 2, "ethnic": 2, "sex": 2, "characterist": 2, "gender": 2, "ident": [2, 7, 8, 10], "express": [2, 6], "level": [2, 4, 10, 11], "educ": 2, "socio": 2, "econom": 2, "statu": [2, 6], "nation": [2, 4], "person": [2, 6], "appear": 2, "race": 2, "religion": 2, "sexual": 2, "orient": 2, "exampl": [2, 3, 6, 11], "behavior": 2, "contribut": 2, "creat": [2, 3, 4, 7, 8, 9, 10, 11], "posit": [2, 11], "includ": [2, 4, 6, 7, 8, 10, 11], "inclus": [2, 6], "languag": [2, 6], "Being": 2, "respect": [2, 6], "differ": [2, 4, 6, 10, 11], "viewpoint": 2, "gracefulli": 2, "accept": 2, "construct": 2, "critic": 2, "focus": [2, 10], "what": [2, 6], "best": [2, 4, 6, 7, 8, 10, 11], "show": [2, 6, 7, 8, 10], "empathi": 2, "toward": 2, "other": [2, 4, 10, 11], "member": 2, "unaccept": [2, 6], "The": [2, 3, 4, 6, 7, 8, 10, 11], "imageri": 2, "unwelcom": 2, "attent": 2, "advanc": 2, "troll": 2, "insult": 2, "derogatori": 2, "comment": 2, "polit": 2, "attack": 2, "public": [2, 4], "privat": [2, 6], "publish": [2, 6], "inform": [2, 4, 6], "physic": [2, 6], "electron": [2, 6], "address": [2, 6], "explicit": 2, "permiss": 2, "which": [2, 3, 4, 6, 7, 8, 10, 11], "could": [2, 6], "reason": [2, 6], "consid": [2, 6, 7, 8, 9, 10, 11], "inappropri": 2, "profession": 2, "ar": [2, 3, 4, 6, 7, 8, 10, 11], "clarifi": 2, "expect": [2, 6], "take": [2, 6], "appropri": [2, 6], "fair": [2, 6], "action": [2, 6], "ani": [2, 4, 6], "instanc": 2, "have": [2, 4, 7, 8, 10, 11], "right": 2, "edit": 2, "reject": 2, "commit": [2, 3, 6], "wiki": 2, "align": 2, "ban": 2, "temporarili": 2, "perman": [2, 6], "thei": [2, 4, 6], "deem": [2, 6], "threaten": [2, 6], "offens": 2, "harm": 2, "appli": [2, 4], "within": [2, 4, 6, 7, 8, 10], "space": [2, 10], "also": [2, 4, 6, 7, 8, 10, 11], "individu": [2, 6], "repres": [2, 4, 6, 10, 11], "its": [2, 4, 6], "offici": [2, 6], "e": [2, 4, 6, 11], "mail": [2, 6], "post": 2, "via": [2, 3], "social": 2, "media": 2, "account": [2, 4], "act": 2, "appoint": 2, "onlin": 2, "offlin": 2, "event": [2, 6], "represent": 2, "mai": [2, 6], "further": [2, 6], "defin": [2, 6, 11], "abus": [2, 6], "otherwis": [2, 6], "report": [2, 7, 8, 10], "contact": [2, 6], "team": 2, "ghislain": [2, 7, 8, 9, 10], "dot": 2, "vieilled": [2, 10], "cirad": 2, "fr": [2, 4, 11], "complaint": 2, "review": [2, 6], "investig": 2, "result": [2, 4, 6, 10], "necessari": [2, 6, 11], "circumst": [2, 6], "oblig": [2, 6], "confidenti": 2, "regard": [2, 6], "incid": 2, "detail": [2, 4, 6, 7, 8], "specif": [2, 6, 10], "polici": 2, "separ": [2, 6], "who": [2, 3, 4, 6], "do": [2, 3, 6, 10], "follow": [2, 3, 4, 6, 7, 8, 10, 11], "good": [2, 3], "faith": 2, "face": 2, "temporari": 2, "repercuss": 2, "determin": [2, 4, 6, 10], "": [2, 3, 4, 6, 8, 9, 10, 11], "leadership": 2, "adapt": [2, 6], "from": [2, 3, 4, 7, 8, 9, 10, 11], "coven": [2, 6], "1": [2, 4, 11], "4": [2, 11], "avail": [2, 6, 9], "http": [2, 4, 6, 11], "www": [2, 6], "org": [2, 6], "html": [2, 6], "For": [2, 4, 6, 10, 11], "answer": 2, "common": [2, 6], "question": 2, "about": [2, 6], "see": [2, 4, 6, 10, 11], "faq": 2, "riskmapjnr": [3, 7, 8, 9, 10, 11], "python": [3, 9], "sourc": [3, 4, 11], "under": [3, 4, 6, 11], "gnu": [3, 4], "gpl": [3, 4, 6], "3": [3, 4, 11], "licens": [3, 4], "anybodi": [3, 4], "can": [3, 4, 6, 7, 8, 10, 11], "develop": [3, 4, 6], "There": 3, "mani": 3, "wai": [3, 4, 6, 11], "write": [3, 6], "submit": 3, "featur": [3, 6], "request": 3, "provid": [3, 4, 6, 7, 8, 10, 11], "function": [3, 6, 7, 8, 9, 10], "incorpor": [3, 4, 6], "futur": [3, 6, 11], "everi": [3, 4, 6], "agre": [3, 4, 6], "Of": [3, 6], "conduct": [3, 4], "If": [3, 6, 11], "you": [3, 4, 6], "want": [3, 6], "discuss": [3, 10, 11], "pleas": [3, 6], "github": [3, 4], "page": [3, 4, 5], "chang": [3, 4, 6, 11], "should": [3, 4, 6, 10], "made": [3, 6, 10], "pull": 3, "pr": 3, "learn": 3, "how": [3, 4, 7, 8], "video": 3, "seri": 3, "aaron": 3, "meurer": 3, "git": 3, "workflow": 3, "guid": 3, "import": [3, 6, 9, 11], "fork": 3, "repositori": [3, 4], "branch": 3, "default": [3, 11], "master": [3, 4], "keep": [3, 6], "your": [3, 4], "up": [3, 7, 8, 10, 11], "date": [3, 6, 10, 11], "chri": 3, "beam": 3, "ha": [3, 4, 6, 7, 8, 10, 11], "written": [3, 6], "messag": [3, 11], "push": 3, "obtain": [4, 7, 8, 10, 11], "spatial": [4, 7, 8, 10, 11], "degrad": 4, "methodologi": [4, 7, 8, 10, 11], "context": [4, 6], "nest": 4, "redd": 4, "jnr": [4, 7, 8, 10, 11], "onli": [4, 6, 7, 10, 11], "cover": [4, 6, 11], "input": [4, 10, 11], "vc": 4, "verifi": 4, "carbon": 4, "standard": [4, 6], "program": 4, "allow": [4, 6], "certifi": 4, "turn": 4, "greenhous": 4, "ga": 4, "ghg": 4, "emiss": 4, "reduct": 4, "tradabl": 4, "credit": 4, "sinc": 4, "launch": 4, "2006": 4, "grown": 4, "world": 4, "largest": 4, "voluntari": 4, "sector": 4, "mitig": 4, "across": [4, 6], "entir": [4, 6, 11], "subnat": 4, "call": [4, 6, 7, 8, 9, 11], "aim": [4, 6], "reduc": 4, "scale": 4, "framework": 4, "integr": 4, "govern": [4, 6], "led": 4, "activ": [4, 6], "establish": 4, "clear": [4, 6], "pathwai": 4, "broader": 4, "ensur": [4, 6, 10], "given": [4, 6, 10, 11], "consist": [4, 6], "baselin": 4, "approach": [4, 10, 11], "leakag": 4, "displac": 4, "caus": [4, 6], "outsid": [4, 6], "boundari": 4, "monitor": 4, "tool": [4, 6], "alloc": 4, "requir": 4, "deriv": [4, 9], "base": [4, 6, 10], "minim": [4, 11], "past": [4, 10], "creation": 4, "categor": [4, 7, 8, 10, 11], "static": 4, "whose": [4, 6], "categori": [4, 11], "refer": [4, 6], "frel": 4, "throughout": 4, "geograph": 4, "distribut": [4, 6], "lower": [4, 7, 8, 10, 11], "while": [4, 11], "favor": [4, 6], "simplic": 4, "straightforward": 4, "sever": [4, 7, 8, 9, 10, 11], "geoprocess": 4, "raster": [4, 7, 8, 11], "data": [4, 6, 9, 11], "extent": [4, 6], "eg": 4, "high": [4, 10], "resolut": [4, 10, 11], "30": [4, 6, 7, 8, 9, 10, 11], "m": [4, 7, 8, 9, 10, 11], "perform": [4, 6, 11], "depend": 4, "virtual": 4, "either": [4, 6, 11], "through": [4, 6], "miniconda3": [4, 7, 8, 9, 10], "here": [4, 9, 10], "Then": 4, "command": [4, 6], "name": [4, 6, 11], "rmj": [4, 7, 8, 9, 10], "c": [4, 6], "forg": 4, "gdal": [4, 7, 8, 9, 10], "numpi": [4, 7, 8, 9, 10, 11], "panda": [4, 7, 8, 9, 10], "pip": 4, "scipi": [4, 11], "ye": 4, "pypi": 4, "com": 4, "ghislainv": [4, 11], "archiv": 4, "zip": 4, "dev": 4, "sphinx": 4, "flake8": 4, "jedi": 4, "jupyt": 4, "geopanda": 4, "descart": 4, "folium": 4, "option": [4, 6, 11], "addit": [4, 10, 11], "To": [4, 6, 10], "deactiv": 4, "delet": [4, 11], "env": [4, 7, 8, 9, 10], "cd": 4, "mkdir": 4, "venv": 4, "directori": [4, 7, 8, 9, 10, 11], "usr": 4, "bin": [4, 10, 11], "python3": 4, "global": 4, "build_ext": 4, "config": 4, "rm": 4, "r": 4, "just": [4, 11], "been": [4, 6, 11], "correctli": [4, 11], "termin": [4, 11], "return": [4, 6, 10, 11], "short": [4, 6], "descript": [4, 11], "number": [4, 6, 7, 8, 9, 10, 11], "ecologi": [4, 11], "x": [4, 7, 8, 10, 11], "edg": [4, 11], "beyond": [4, 6, 7, 8, 11], "neglig": [4, 7, 8, 10], "dist_edge_threshold": [4, 10, 11], "local": [4, 6, 11], "move": [4, 7, 8, 10, 11], "window": [4, 6, 7, 8, 9, 10, 11], "vari": 4, "local_defor_r": [4, 10, 11], "transform": 4, "slice": [4, 7, 8, 9, 10, 11], "algorithm": [4, 7, 8, 10, 11], "defor_cat": [4, 10, 11], "select": [4, 11], "higher": 4, "accuraci": 4, "defrate_per_cat": [4, 10, 11], "known": [4, 10], "scientif": 4, "fast": 4, "matrix": 4, "vector": [4, 11], "oper": [4, 6], "process": 4, "georeferenc": 4, "divid": 4, "block": [4, 11], "memori": [4, 11], "Such": [4, 6], "g": [4, 11], "our": [4, 6], "guidelin": 4, "code": [4, 7, 9, 10], "home": [4, 7, 8, 9, 10], "preambl": 4, "2": [4, 11], "articl": [4, 6], "api": 4, "plot": [4, 7, 8, 10], "miscellan": 4, "changelog": 4, "0": [4, 7, 8, 9, 10, 11], "gener": 4, "term": 4, "AND": 4, "condit": 4, "These": 4, "index": [4, 5], "modul": [4, 5, 9], "search": [4, 5], "29": [6, 7, 9, 10], "june": 6, "2007": 6, "copyright": 6, "softwar": 6, "foundat": 6, "inc": 6, "fsf": 6, "permit": 6, "copyleft": 6, "kind": 6, "work": [6, 11], "most": [6, 10], "practic": 6, "design": 6, "awai": 6, "share": [6, 7, 8, 9, 10], "By": 6, "contrast": 6, "intend": 6, "guarante": 6, "remain": [6, 7, 8, 10, 11], "author": 6, "too": 6, "speak": 6, "price": 6, "charg": 6, "them": [6, 11], "wish": 6, "receiv": 6, "piec": 6, "know": 6, "thing": 6, "need": [6, 7, 8, 9, 10], "prevent": 6, "deni": 6, "ask": 6, "therefor": 6, "certain": 6, "respons": 6, "whether": [6, 11], "grati": 6, "fee": 6, "pass": 6, "same": [6, 10, 11], "And": 6, "so": [6, 10, 11], "two": [6, 10, 11], "assert": 6, "offer": 6, "give": 6, "clearli": 6, "explain": [6, 10], "both": [6, 7, 8, 10, 11], "sake": 6, "mark": 6, "problem": 6, "attribut": 6, "erron": 6, "previou": [6, 10], "some": [6, 10, 11], "devic": 6, "access": [6, 7, 8], "instal": 6, "insid": [6, 10], "although": 6, "manufactur": 6, "fundament": 6, "incompat": 6, "systemat": 6, "pattern": 6, "occur": [6, 7, 8, 10], "product": 6, "precis": [6, 10], "where": 6, "prohibit": 6, "those": 6, "aris": 6, "substanti": 6, "domain": 6, "stand": 6, "readi": 6, "extend": 6, "provis": 6, "constantli": 6, "state": 6, "restrict": 6, "purpos": 6, "avoid": [6, 10, 11], "special": 6, "danger": 6, "effect": 6, "proprietari": 6, "assur": 6, "cannot": 6, "render": 6, "modif": 6, "mean": [6, 7, 8, 10, 11], "like": 6, "semiconductor": 6, "mask": 6, "each": [6, 9, 10, 11], "license": 6, "organ": 6, "part": 6, "fashion": 6, "than": [6, 7, 8, 10, 11], "exact": 6, "earlier": 6, "A": [6, 10, 11], "unmodifi": 6, "propag": 6, "anyth": 6, "would": 6, "directli": 6, "secondarili": 6, "liabl": 6, "infring": 6, "applic": 6, "except": [6, 11], "well": [6, 10, 11], "enabl": 6, "parti": 6, "mere": 6, "interact": 6, "network": 6, "transfer": 6, "interfac": 6, "notic": 6, "conveni": 6, "promin": 6, "visibl": 6, "tell": 6, "view": 6, "present": [6, 10, 11], "list": [6, 11], "menu": 6, "item": 6, "meet": 6, "criterion": 6, "prefer": 6, "object": [6, 11], "recogn": 6, "case": [6, 7, 10, 11], "specifi": 6, "particular": 6, "one": [6, 9, 10, 11], "wide": 6, "among": 6, "system": 6, "librari": 6, "whole": 6, "normal": [6, 10, 11], "major": [6, 10], "compon": 6, "b": [6, 10], "serv": 6, "implement": [6, 11], "essenti": 6, "kernel": 6, "compil": 6, "produc": [6, 10, 11], "correspond": [6, 10, 11], "script": 6, "control": 6, "howev": 6, "doe": [6, 11], "associ": [6, 11], "dynam": 6, "link": 6, "subprogram": 6, "intim": 6, "flow": 6, "between": [6, 7, 8, 10, 11], "regener": 6, "grant": 6, "irrevoc": 6, "met": 6, "explicitli": 6, "affirm": 6, "unlimit": 6, "content": 6, "constitut": 6, "acknowledg": 6, "equival": 6, "long": 6, "forc": 6, "sole": 6, "exclus": 6, "facil": 6, "compli": 6, "materi": 6, "thu": [6, 10], "behalf": 6, "direct": 6, "relationship": [6, 7, 8, 10, 11], "below": [6, 10, 11], "sublicens": 6, "shall": 6, "technolog": 6, "measur": 6, "fulfil": 6, "wipo": 6, "treati": 6, "adopt": 6, "20": [6, 7, 10], "decemb": 6, "1996": 6, "similar": 6, "waiv": 6, "power": 6, "forbid": 6, "exercis": 6, "intent": 6, "enforc": 6, "against": [6, 9], "third": [6, 10], "medium": 6, "conspicu": 6, "intact": 6, "ad": 6, "accord": 6, "absenc": 6, "along": 6, "support": 6, "carri": 6, "relev": 6, "anyon": 6, "come": 6, "possess": 6, "invalid": 6, "d": [6, 10], "independ": [6, 10], "natur": [6, 10, 11], "extens": 6, "combin": 6, "larger": 6, "volum": 6, "storag": 6, "aggreg": 6, "machin": 6, "readabl": 6, "embodi": 6, "accompani": 6, "fix": 6, "durabl": 6, "customarili": 6, "interchang": 6, "least": [6, 10], "three": [6, 10, 11], "year": [6, 11], "spare": 6, "custom": 6, "model": [6, 9, 11], "more": [6, 7, 8, 10], "cost": 6, "server": 6, "altern": 6, "occasion": 6, "noncommerci": 6, "subsect": 6, "6b": 6, "place": 6, "next": 6, "sai": 6, "find": 6, "host": 6, "satisfi": 6, "peer": 6, "transmiss": 6, "being": [6, 7, 8, 10, 11], "6d": 6, "portion": 6, "exclud": [6, 11], "consum": 6, "tangibl": 6, "properti": 6, "famili": 6, "household": 6, "sold": 6, "dwell": 6, "doubt": 6, "resolv": 6, "coverag": 6, "typic": [6, 11], "class": [6, 7, 8, 10, 11], "actual": 6, "commerci": 6, "industri": 6, "unless": 6, "signific": 6, "mode": [6, 11], "method": [6, 7, 8, 9, 10, 11], "procedur": [6, 10], "kei": 6, "suffic": 6, "continu": [6, 10], "interf": 6, "becaus": [6, 10], "transact": 6, "perpetu": 6, "character": 6, "But": 6, "neither": 6, "nor": 6, "retain": 6, "abil": 6, "rom": 6, "servic": 6, "updat": 6, "itself": 6, "advers": 6, "affect": 6, "violat": 6, "rule": 6, "protocol": 6, "format": 6, "publicli": 6, "password": 6, "unpack": 6, "read": 6, "supplement": 6, "treat": 6, "though": 6, "were": 6, "own": 6, "notwithstand": 6, "add": [6, 11], "holder": 6, "preserv": 6, "contain": [6, 10, 11], "misrepresent": 6, "origin": 6, "licensor": 6, "declin": 6, "trademark": 6, "trade": 6, "f": [6, 7, 8, 9, 10], "indemnif": 6, "contractu": 6, "assumpt": 6, "impos": [6, 10], "relicens": 6, "surviv": 6, "statement": 6, "indic": [6, 7, 8, 10, 11], "abov": 6, "expressli": 6, "attempt": 6, "void": 6, "paragraph": 6, "ceas": 6, "reinstat": 6, "provision": 6, "until": 6, "fail": 6, "notifi": 6, "prior": 6, "60": [6, 7, 8, 10, 11], "dai": 6, "after": [6, 10], "cessat": 6, "moreov": 6, "time": [6, 8, 9, 10, 11], "cure": 6, "receipt": 6, "qualifi": 6, "order": 6, "ancillari": 6, "consequ": [6, 10], "likewis": 6, "noth": 6, "subject": 6, "complianc": 6, "entiti": 6, "asset": 6, "subdivid": 6, "merg": 6, "whatev": 6, "predecessor": 6, "had": 6, "plu": [6, 11], "effort": 6, "royalti": 6, "initi": 6, "litig": 6, "cross": 6, "claim": 6, "counterclaim": 6, "lawsuit": 6, "alleg": 6, "sell": 6, "sale": 6, "alreadi": [6, 11], "acquir": 6, "hereaft": 6, "manner": 6, "worldwid": 6, "agreement": 6, "denomin": 6, "sue": 6, "knowingli": 6, "reli": 6, "readili": 6, "arrang": 6, "depriv": 6, "yourself": 6, "benefit": 6, "knowledg": 6, "identifi": [6, 7, 8, 10, 11], "believ": 6, "pursuant": 6, "connect": 6, "singl": 6, "procur": 6, "convey": 6, "discriminatori": 6, "scope": 6, "busi": 6, "payment": 6, "primarili": 6, "enter": 6, "wa": 6, "28": [6, 7, 10, 11], "march": 6, "constru": 6, "impli": [6, 10], "defens": 6, "court": 6, "contradict": 6, "excus": 6, "simultan": 6, "pertin": 6, "collect": 6, "whom": 6, "refrain": 6, "concern": 6, "spirit": 6, "distinguish": 6, "later": 6, "choos": 6, "ever": 6, "proxi": 6, "decid": 6, "THERE": 6, "NO": 6, "FOR": 6, "THE": 6, "TO": 6, "BY": 6, "IN": 6, "OR": 6, "AS": 6, "OF": 6, "BUT": 6, "NOT": 6, "merchant": 6, "fit": 6, "qualiti": 6, "WITH": 6, "prove": 6, "defect": 6, "assum": [6, 10, 11], "repair": 6, "WILL": 6, "BE": 6, "damag": 6, "incident": 6, "consequenti": 6, "out": 6, "inabl": 6, "loss": 6, "BEING": 6, "inaccur": 6, "sustain": 6, "failur": 6, "even": 6, "IF": 6, "SUCH": 6, "advis": 6, "possibl": 6, "approxim": [6, 10, 11], "absolut": 6, "waiver": 6, "civil": 6, "greatest": 6, "achiev": 6, "redistribut": 6, "attach": 6, "It": [6, 7, 8, 11], "safest": 6, "line": [6, 7, 8, 10, 11], "pointer": 6, "full": [6, 7, 9, 11], "brief": 6, "idea": 6, "hope": 6, "paper": 6, "type": [6, 10, 11], "w": 6, "hypothet": 6, "cours": 6, "might": 6, "gui": 6, "box": 6, "employ": 6, "programm": 6, "school": 6, "sign": 6, "subroutin": 6, "lesser": 6, "instead": 6, "philosophi": 6, "why": 6, "lgpl": 6, "analysi": [7, 8, 9, 10, 11], "o": [7, 8, 9, 10], "multiprocess": [7, 8, 9], "mp": [7, 8, 9], "pkg_resourc": [7, 8, 9, 10], "np": [7, 8, 9, 10, 11], "pd": [7, 8, 9, 10], "tabul": [7, 8, 9, 10], "increas": [7, 8, 9, 10, 11], "cach": [7, 8, 9, 10], "speed": [7, 8, 9, 10], "gdal_cachemax": [7, 8, 9, 10], "1024": [7, 8, 9, 10], "proj_lib": [7, 8, 9, 10], "environment": [7, 8, 9, 10], "variabl": [7, 8, 9, 10, 11], "pyenv": [7, 8, 9, 10], "latest": [7, 8, 9, 10], "conda": [7, 8, 9, 10], "proj": [7, 8, 9, 10], "save": [7, 8, 9, 10], "out_dir": [7, 8, 9, 10], "outputs_get_start": 7, "make_dir": [7, 8, 9, 10, 11], "guadeloup": [7, 10], "archipelago": [7, 10], "studi": [7, 10], "recent": [7, 8, 10], "fcc123_glp": [7, 9, 10], "tif": [7, 8, 9, 10, 11], "valu": [7, 8, 10, 11], "2000": [7, 10, 11], "2010": [7, 8, 10, 11], "2020": [7, 10, 11], "calibr": [7, 8, 9, 10, 11], "second": [7, 8, 10, 11], "resource_filenam": [7, 9, 10], "print": [7, 8, 9, 10, 11], "border_fil": [7, 8, 9, 10], "ctry_border_glp": [7, 9, 10], "gpkg": [7, 8, 9, 10], "fcc123": [7, 8, 10, 11], "ofil": [7, 8, 10], "path": [7, 8, 10, 11], "png": [7, 8, 10, 11], "fig_fcc123": [7, 8, 10], "input_fcc_rast": [7, 8, 10, 11], "maxpixel": [7, 8, 10, 11], "1e8": [7, 8, 10], "output_fil": [7, 8, 10, 11], "border": [7, 8, 10, 11], "linewidth": [7, 8, 10], "figsiz": [7, 8, 9, 10, 11], "5": [7, 8, 9, 11], "dpi": [7, 8, 9, 10, 11], "800": [7, 8, 10], "orang": [7, 8, 10], "red": [7, 8, 10], "green": [7, 8, 10], "sequenc": [7, 8], "cpu": [7, 8, 9, 11], "ncpu": [7, 8, 9, 11], "cpu_count": [7, 8, 9], "6": [7, 8, 9, 11], "results_makemap": [7, 8, 9], "time_interv": [7, 8, 9, 10, 11], "10": [7, 9, 10, 11], "output_dir": [7, 8, 9, 11], "clean": [7, 8, 9, 11], "fals": [7, 8, 9, 10, 11], "dist_bin": [7, 8, 9, 10, 11], "arang": [7, 8, 9, 10, 11], "1080": [7, 8, 9, 10, 11], "win_siz": [7, 8, 9, 10, 11], "100": [7, 8, 9, 10, 11], "8": [7, 8, 9, 11], "ncat": [7, 8, 9, 10, 11], "true": [7, 8, 9, 10, 11], "equal": [7, 8, 9, 10, 11], "interv": [7, 8, 9, 10, 11], "csize": [7, 8, 9, 10, 11], "40": [7, 9, 10, 11], "no_quantity_error": [7, 8, 9, 10, 11], "blk_row": [7, 8, 9, 10, 11], "128": [7, 9, 10, 11], "verbos": [7, 8, 9, 10, 11], "ei": [7, 8, 9, 11], "13": [7, 8, 9, 10], "21": [7, 10], "37": [7, 8], "45": [7, 9], "ea": [7, 8, 9, 11], "9": [7, 8, 9, 11], "11": [7, 9, 10, 11], "7": [7, 8, 9], "12": [7, 8, 9, 10], "53": 7, "14": [7, 8, 9, 10], "61": [7, 10], "16": [7, 8, 10], "69": [7, 11], "85": 7, "18": [7, 8, 10], "77": [7, 8], "22": [7, 10], "93": 7, "15": [7, 8, 9, 10], "19": [7, 10], "17": [7, 9, 10], "23": [7, 9, 10], "histor": [7, 9, 10, 11], "threshold": [7, 8, 10, 11], "dist_thresh": [7, 8, 10, 11], "theshold": [7, 8], "180": [7, 8, 10, 11], "tabl": [7, 8, 10, 11], "cumul": [7, 8, 10, 11], "percentag": [7, 8, 10, 11], "npixel": [7, 8, 10], "52150": 7, "4693": 7, "73": 7, "6676": 7, "10755": 7, "967": 7, "95": [7, 8, 10], "5661": 7, "88": [7, 8], "8602": 7, "90": [7, 8, 10, 11], "4192": 7, "377": 7, "6038": 7, "94": [7, 8], "7818": 7, "120": [7, 8, 10, 11], "1654": 7, "148": 7, "86": 7, "6187": 7, "59": [7, 8, 10], "97": [7, 8], "1183": 7, "150": [7, 8, 10, 11], "968": 7, "87": [7, 8], "6274": 7, "71": [7, 8], "98": [7, 8, 10], "4857": 7, "402": 7, "36": 7, "6310": 7, "89": [7, 8], "99": [7, 8, 10, 11], "0536": 7, "210": [7, 8, 10, 11], "233": 7, "6331": 7, "3827": 7, "240": [7, 8, 10, 11], "149": 7, "41": [7, 9], "6345": 7, "27": [7, 10, 11], "5932": 7, "270": [7, 8, 10, 11], "6354": 7, "7344": 7, "300": [7, 8, 10, 11], "46": 7, "6358": 7, "7994": 7, "fullhist": [7, 8, 11], "perc_dist": [7, 8, 10, 11], "figur": [7, 8, 10, 11], "locat": [7, 8, 10], "wrmse": [7, 8, 10, 11], "seem": [7, 8], "lowest": [7, 8], "modcomp": [7, 8, 11], "mod_comp": [7, 8, 11], "ws_hat": [7, 8, 11], "m_hat": [7, 8, 11], "pixel": [7, 8, 11], "look": [7, 8], "observ": [7, 8, 10, 11], "predict": [7, 8, 10, 11], "km": [7, 8, 10, 11], "grid": [7, 8, 10, 11], "cell": [7, 8, 10, 11], "pred_obs_w": [7, 8, 11], "_": [7, 8, 11], "weight": [7, 8, 10, 11], "root": [7, 8, 10, 11], "squar": [7, 8, 10, 11], "error": [7, 8, 10, 11], "n": [7, 8, 10], "graph": [7, 8, 10], "riskmap": [7, 8, 10, 11], "ifil": [7, 8], "endval": [7, 8, 11], "riskmap_w": [7, 8, 11], "_ev": [7, 8, 11], "riskmap_fig": [7, 8, 10], "input_risk_map": [7, 8, 10, 11], "legend": [7, 8, 10, 11], "belong": [7, 8, 10], "farther": [7, 8, 10], "outputs_kenya": 8, "fcc123_ken_101418": 8, "2014": 8, "2018": 8, "ctry_border_ken": 8, "start_tim": [8, 9], "200": 8, "400": 8, "sec_seq": [8, 9], "strftime": [8, 9], "h": [8, 9], "gmtime": [8, 9], "00": [8, 9], "49": 8, "43": [8, 10], "780": [8, 11], "4005e": 8, "07": 8, "26045e": 8, "06": [8, 9], "48": [8, 9], "9547": 8, "35311e": 8, "481780": 8, "74223e": 8, "67": 8, "6666": 8, "02736e": 8, "272463": 8, "01469e": 8, "78": 8, "2489": 8, "49449e": 8, "134504": 8, "1492e": 8, "83": [8, 10], "4729": 8, "17144e": 8, "105430": 8, "25463e": 8, "5677": 8, "639743": 8, "57576": 8, "3122e": 8, "8039": 8, "469736": 8, "42276": 8, "35448e": 8, "91": 8, "4459": 8, "417499": 8, "37574": 8, "39205e": 8, "92": [8, 10], "9053": 8, "326224": 8, "29360": 8, "42141e": 8, "0456": 8, "260730": 8, "23465": 8, "44488e": 8, "957": 8, "330": [8, 11], "179341": 8, "16140": 8, "46102e": 8, "5839": 8, "360": [8, 11], "147688": 8, "13291": 8, "47431e": 8, "96": 8, "1001": [8, 10], "390": [8, 11], "153559": 8, "13820": 8, "48813e": 8, "6369": 8, "420": [8, 11], "109451": 8, "9850": 8, "49798e": 8, "0195": 8, "450": [8, 11], "98440": 8, "8859": 8, "50684e": 8, "3636": 8, "480": [8, 11], "72145": 8, "6493": 8, "05": 8, "51334e": 8, "6158": 8, "510": [8, 11], "70682": 8, "6361": 8, "38": [8, 10], "5197e": 8, "8628": 8, "540": [8, 11], "58834": 8, "5295": 8, "52499e": 8, "0685": 8, "570": [8, 11], "53707": 8, "4833": 8, "63": 8, "52983e": 8, "2562": 8, "600": [8, 11], "47735": 8, "4296": 8, "53412e": 8, "4231": 8, "630": [8, 11], "36436": 8, "3279": 8, "24": [8, 10], "5374e": 8, "5504": 8, "660": [8, 11], "38346": 8, "3451": [8, 10], "54085e": 8, "6845": 8, "690": [8, 11], "30219": 8, "2719": 8, "54357e": 8, "7901": 8, "720": [8, 11], "26853": 8, "2416": 8, "54599e": 8, "884": 8, "750": [8, 11], "27575": 8, "2481": 8, "75": 8, "54847e": 8, "9804": 8, "22398": 8, "2015": 8, "82": 8, "55049e": 8, "0586": 8, "810": [8, 11], "20402": 8, "1836": 8, "55232e": 8, "840": [8, 10, 11], "17439": 8, "1569": 8, "51": 8, "55389e": 8, "1909": 8, "870": [8, 11], "16532": 8, "1487": 8, "55538e": 8, "2487": 8, "900": [8, 11], "17080": 8, "1537": 8, "55692e": 8, "3084": 8, "25": [8, 10], "50": [8, 10], "outputs_parallel": 9, "load": 9, "argument": [9, 10, 11], "none": [9, 11], "taken": 9, "35": 9, "47": 9, "02": 9, "maximum": [9, 11], "sec_par": 9, "took": 9, "02m": 9, "pyplot": 10, "plt": 10, "outputs_step": 10, "becom": 10, "inde": 10, "tropic": 10, "decreas": 10, "rapidli": 10, "et": 10, "al": 10, "2013": 10, "grinand": 10, "2021": 10, "dez\u00e9cach": 10, "2017": 10, "suggest": 10, "leq": 10, "gt": 10, "As": 10, "assign": [10, 11], "dist_edge_thr": 10, "defor_valu": [10, 11], "dist_fil": [10, 11], "dist_edg": [10, 11], "tab_file_dist": [10, 11], "tab_dist": 10, "csv": [10, 11], "fig_file_dist": [10, 11], "dictionnari": 10, "24937": 10, "2244": 10, "33": 10, "583": 10, "310": 10, "2554": 10, "09": 10, "2645": 10, "01": 10, "5051": 10, "282": 10, "2670": 10, "39": 10, "4503": 10, "102": 10, "2679": 10, "57": 10, "7922": 10, "2682": 10, "8894": 10, "26": [10, 11], "2683": 10, "44": 10, "9363": 10, "54": 10, "9564": 10, "2684": 10, "9631": 10, "9732": 10, "theta": 10, "yr": 10, "alpha_2": 10, "alpha_1": 10, "tau": 10, "t_1": 10, "t_2": 10, "describ": 10, "disk": 10, "convert": 10, "integ": [10, 11], "10000": [10, 11], "ten": [10, 11], "thousand": [10, 11], "uint16": [10, 11], "suffici": 10, "ldefrate_fil": [10, 11], "ldefrat": 10, "65535": [10, 11], "previous": [10, 11], "greater": [10, 11], "ldefrate_with_zero_fil": [10, 11], "ldefrate_with_zero": [10, 11], "fourth": 10, "31": 10, "compar": [10, 11], "break": [10, 11], "With": [10, 11], "rang": [10, 11], "landscap": [10, 11], "frequenc": 10, "befor": [10, 11], "riskmap_fil": [10, 11], "334": 10, "668": 10, "1334": 10, "1668": 10, "2001": 10, "2334": 10, "2667": 10, "3001": 10, "3334": 10, "3667": 10, "4001": 10, "4334": 10, "4667": 10, "5000": 10, "5334": 10, "5667": 10, "6000": 10, "6334": 10, "6667": 10, "7000": 10, "7334": 10, "7667": 10, "8000": 10, "8334": 10, "8667": 10, "9000": 10, "9333": 10, "9667": 10, "10001": 10, "tab_file_defr": [10, 11], "cat": 10, "nfor": 10, "ndefor": 10, "361904": 10, "7766": 10, "002166880478294053": 10, "12770": 10, "5856": 10, "0595107240968078": 10, "6490": 10, "4379": 10, "10623292135671092": 10, "3119": 10, "2543": 10, "15542015960877786": 10, "1492": 10, "1342": 10, "20524687620953053": 10, "789": 10, "24433538025668888": 10, "476": 10, "457": 10, "2753727450970095": 10, "168": 10, "166": 10, "35794523801272426": 10, "6304": 10, "spread": 10, "veri": 10, "low": 10, "ii": [10, 11], "iii": 10, "dist_valu": 10, "input_fil": 10, "dist_edge_v": [10, 11], "get_ldefz_v": 10, "dist_v_fil": 10, "ldefrate_with_zero_v_fil": 10, "ldefrate_with_zero_v": 10, "get_riskmap_v": 10, "riskmap_v_fil": 10, "riskmap_v": 10, "fifth": 10, "1000": [10, 11], "note": 10, "fall": 10, "don": 10, "t": 10, "w_j": 10, "j": 10, "beta_j": 10, "total": [10, 11], "calcul": 10, "quantiti": [10, 11], "sensu": 10, "pontiu": 10, "due": [10, 11], "current": [10, 11], "pred_ob": [10, 11], "tab_file_pr": [10, 11], "fig_file_pr": [10, 11], "repeat": 10, "variou": 10, "togeth": 10, "lead": 10, "minimum": 10, "smallest": 10, "onc": 10, "riskmapknr": 11, "zero": 11, "surfac": 11, "predomin": 11, "small": 11, "paramet": 11, "row": 11, "logic": 11, "byte": 11, "255": 11, "per": 11, "123": 11, "No": 11, "t1": 11, "t2": 11, "confirm": 11, "t3": 11, "defor_threshold": 11, "arrai": 11, "930": 11, "960": 11, "990": 11, "1020": 11, "1050": 11, "dist_file_avail": 11, "check_fcc": 11, "unit": 11, "euclidean": 11, "gdal_proxim": 11, "scalar": 11, "percent": 11, "dimension": 11, "monoton": 11, "npix": 11, "cum": 11, "sum": 11, "perc": 11, "imag": 11, "lage": 11, "hold": 11, "boolean": 11, "check": 11, "fcc": 11, "dictionari": 11, "tot_def": 11, "rescale_min_v": 11, "rescale_max_v": 11, "focal": 11, "uniform_filt": 11, "over": 11, "generic_filt": 11, "slower": 11, "stride": 11, "exist": 11, "constant": 11, "cval": 11, "odd": 11, "rescal": 11, "down": 11, "maxim": 11, "peform": 11, "calval": 11, "dure": 11, "dist_edge_c": 11, "perc_dist_c": 11, "ldefrate_w": 11, "ldefrate_with_zero_w": 11, "defrate_per_cat_w": 11, "_v": 11, "v": 11, "comparison": 11, "dist_edge_ev": 11, "probabl": 11, "abbrevi": 11, "nb": 11, "point": 11, "sequenti": 11, "ncell": 11, "begin": 11, "csize_km": 11, "kilomet": 11, "wrmse_hat": 11, "hectar": 11, "null": 11, "10km": 11, "500000": 11, "zoom": 11, "col": 11, "165": 11, "227": 11, "34": 11, "139": 11, "kwarg": 11, "region": 11, "xmin": 11, "xmax": 11, "ymin": 11, "ymax": 11, "rgba": 11, "color": 11, "inch": 11, "keyword": 11, "prob": 11, "colorbar": 11, "invlogit": 11, "invers": 11, "logit": 11, "differenci": 11, "neg": 11, "overflow": 11, "exp": 11, "newdir": 11, "silent": 11, "complet": 11, "regular": 11, "rais": 11, "parent": 11, "tree": 11, "dir_path": 11, "int": 11, "limit_to_directori": 11, "bool": 11, "length_limit": 11, "visual": 11, "structur": 11, "limit": 11, "recurs": 11, "length": 11, "stuctur": 11, "entri": 11}, "objects": {"": [[11, 0, 0, "-", "riskmapjnr"]], "riskmapjnr": [[11, 1, 1, "", "defor_cat"], [11, 1, 1, "", "defrate_per_cat"], [11, 1, 1, "", "dist_edge_threshold"], [11, 1, 1, "", "local_defor_rate"], [11, 1, 1, "", "makemap"], [11, 0, 0, "-", "plot"], [11, 0, 0, "-", "riskmapjnr"], [11, 1, 1, "", "set_defor_cat_zero"], [11, 1, 1, "", "validation"]], "riskmapjnr.misc": [[11, 0, 0, "-", "miscellaneous"]], "riskmapjnr.misc.miscellaneous": [[11, 1, 1, "", "invlogit"], [11, 1, 1, "", "make_dir"], [11, 1, 1, "", "tree"]], "riskmapjnr.plot": [[11, 1, 1, "", "fcc123"], [11, 1, 1, "", "riskmap"]], "riskmapjnr.riskmapjnr": [[11, 1, 1, "", "main"]]}, "objtypes": {"0": "py:module", "1": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "function", "Python function"]}, "titleterms": {"articl": 0, "changelog": 1, "riskmapjnr": [1, 4], "1": [1, 6, 7, 8, 9, 10], "2": [1, 6, 7, 8, 9, 10], "0": [1, 6], "code": [2, 3, 6], "conduct": 2, "our": 2, "pledg": 2, "standard": 2, "respons": 2, "scope": 2, "enforc": 2, "attribut": 2, "commun": 3, "guidelin": 3, "report": 3, "an": 3, "issu": 3, "contribut": [3, 4], "python": [4, 7, 8, 10, 11], "packag": 4, "overview": 4, "statement": 4, "need": 4, "instal": 4, "us": [4, 6], "conda": 4, "recommend": 4, "virtualenv": 4, "test": 4, "main": [4, 11], "function": [4, 11], "tabl": [4, 5], "content": 4, "indic": [4, 5], "licens": 6, "gnu": 6, "gener": 6, "public": 6, "preambl": [6, 7, 8, 9], "term": 6, "AND": 6, "condit": 6, "definit": 6, "sourc": 6, "basic": 6, "permiss": 6, "3": [6, 7, 8, 9, 10], "protect": 6, "user": 6, "legal": 6, "right": 6, "from": 6, "anti": 6, "circumvent": 6, "law": 6, "4": [6, 7, 8, 9, 10], "convei": 6, "verbatim": 6, "copi": 6, "5": [6, 10], "modifi": 6, "version": 6, "6": [6, 10], "non": 6, "form": 6, "7": [6, 10], "addit": 6, "8": [6, 10], "termin": 6, "9": [6, 10], "accept": 6, "Not": 6, "requir": 6, "have": 6, "10": 6, "automat": 6, "downstream": 6, "recipi": 6, "11": 6, "patent": 6, "12": 6, "No": 6, "surrend": 6, "other": 6, "freedom": 6, "13": 6, "affero": 6, "14": 6, "revis": 6, "thi": 6, "15": 6, "disclaim": 6, "warranti": 6, "16": 6, "limit": 6, "liabil": 6, "17": 6, "interpret": 6, "section": 6, "how": 6, "appli": 6, "These": 6, "your": 6, "new": 6, "program": 6, "get": 7, "start": 7, "import": [7, 8, 10], "modul": [7, 8, 10], "forest": [7, 8, 10], "cover": [7, 8, 10], "chang": [7, 8, 10], "data": [7, 8, 10], "deriv": [7, 8, 10], "deforest": [7, 8, 10], "risk": [7, 8, 10], "map": [7, 8, 10], "result": [7, 8, 9], "distanc": [7, 8, 10], "edg": [7, 8, 10], "model": [7, 8], "comparison": [7, 8], "perform": [7, 8], "kenya": 8, "parallel": 9, "comput": 9, "sequenti": 9, "all": 10, "step": 10, "introduct": 10, "object": 10, "local": 10, "rate": 10, "pixel": 10, "zero": 10, "categori": 10, "per": 10, "begin": 10, "valid": 10, "period": 10, "raster": 10, "final": 10, "api": 11, "plot": 11, "miscellan": 11}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx": 60}, "alltitles": {"Articles": [[0, "articles"]], "Changelog": [[1, "changelog"]], "riskmapjnr 1.2.1": [[1, "riskmapjnr-1-2-1"]], "riskmapjnr 1.2": [[1, "riskmapjnr-1-2"]], "riskmapjnr 1.1": [[1, "riskmapjnr-1-1"]], "riskmapjnr 1.0": [[1, "riskmapjnr-1-0"]], "riskmapjnr 0.1": [[1, "riskmapjnr-0-1"]], "Code of conduct": [[2, "code-of-conduct"]], "Our Pledge": [[2, "our-pledge"]], "Our Standards": [[2, "our-standards"]], "Our Responsibilities": [[2, "our-responsibilities"]], "Scope": [[2, "scope"]], "Enforcement": [[2, "enforcement"]], "Attribution": [[2, "attribution"]], "Community guidelines": [[3, "community-guidelines"]], "Report an issue": [[3, "report-an-issue"]], "Contribute to code": [[3, "contribute-to-code"]], "riskmapjnr Python package": [[4, "riskmapjnr-python-package"]], "Overview": [[4, "overview"]], "Statement of Need": [[4, "statement-of-need"]], "Installation": [[4, "installation"]], "Using conda (recommended)": [[4, "using-conda-recommended"]], "Using virtualenv": [[4, "using-virtualenv"]], "Installation testing": [[4, "installation-testing"]], "Main functionalities": [[4, "main-functionalities"]], "Contributing": [[4, "contributing"]], "Table of contents": [[4, "table-of-contents"]], "Indices and tables": [[4, "indices-and-tables"], [5, "indices-and-tables"]], "License": [[6, "license"]], "GNU General Public License": [[6, "gnu-general-public-license"]], "Preamble": [[6, "preamble"]], "TERMS AND CONDITIONS": [[6, "terms-and-conditions"]], "0. Definitions": [[6, "definitions"]], "1. Source Code": [[6, "source-code"]], "2. Basic Permissions": [[6, "basic-permissions"]], "3. Protecting Users\u2019 Legal Rights From Anti-Circumvention Law": [[6, "protecting-users-legal-rights-from-anti-circumvention-law"]], "4. Conveying Verbatim Copies": [[6, "conveying-verbatim-copies"]], "5. Conveying Modified Source Versions": [[6, "conveying-modified-source-versions"]], "6. Conveying Non-Source Forms": [[6, "conveying-non-source-forms"]], "7. Additional Terms": [[6, "additional-terms"]], "8. Termination": [[6, "termination"]], "9. Acceptance Not Required for Having Copies": [[6, "acceptance-not-required-for-having-copies"]], "10. Automatic Licensing of Downstream Recipients": [[6, "automatic-licensing-of-downstream-recipients"]], "11. Patents": [[6, "patents"]], "12. No Surrender of Others\u2019 Freedom": [[6, "no-surrender-of-others-freedom"]], "13. Use with the GNU Affero General Public License": [[6, "use-with-the-gnu-affero-general-public-license"]], "14. Revised Versions of this License": [[6, "revised-versions-of-this-license"]], "15. Disclaimer of Warranty": [[6, "disclaimer-of-warranty"]], "16. Limitation of Liability": [[6, "limitation-of-liability"]], "17. Interpretation of Sections 15 and 16": [[6, "interpretation-of-sections-15-and-16"]], "How to Apply These Terms to Your New Programs": [[6, "how-to-apply-these-terms-to-your-new-programs"]], "Get Started": [[7, "get-started"]], "1 Preamble": [[7, "preamble"], [8, "preamble"], [9, "preamble"]], "1.1 Importing Python modules": [[7, "importing-python-modules"], [8, "importing-python-modules"]], "1.2 Forest cover change data": [[7, "forest-cover-change-data"], [8, "forest-cover-change-data"]], "2 Derive the deforestation risk map": [[7, "derive-the-deforestation-risk-map"]], "3 Results": [[7, "results"], [8, "results"]], "3.1 Deforestation risk and distance to forest edge": [[7, "deforestation-risk-and-distance-to-forest-edge"], [8, "deforestation-risk-and-distance-to-forest-edge"]], "3.2 Model comparison": [[7, "model-comparison"], [8, "model-comparison"]], "3.3 Model performance": [[7, "model-performance"], [8, "model-performance"]], "3.4 Risk map of deforestation": [[7, "risk-map-of-deforestation"], [8, "risk-map-of-deforestation"]], "Kenya": [[8, "kenya"]], "2 Deriving the deforestation risk map": [[8, "deriving-the-deforestation-risk-map"]], "Parallel computing": [[9, "parallel-computing"]], "2 Sequential computing": [[9, "sequential-computing"]], "3 Parallel computing": [[9, "id1"]], "4 Results": [[9, "results"]], "All steps": [[10, "all-steps"]], "1 Introduction": [[10, "introduction"]], "1.1 Objective": [[10, "objective"]], "1.2 Importing Python modules": [[10, "importing-python-modules"]], "1.3 Forest cover change data": [[10, "forest-cover-change-data"]], "2 Deforestation risk and distance to forest edge": [[10, "deforestation-risk-and-distance-to-forest-edge"]], "3 Local deforestation rate": [[10, "local-deforestation-rate"]], "4 Pixels with zero risk of deforestation": [[10, "pixels-with-zero-risk-of-deforestation"]], "5 Categories of deforestation risk": [[10, "categories-of-deforestation-risk"]], "6 Deforestation rates per category of risk": [[10, "deforestation-rates-per-category-of-risk"]], "7 Derive a risk map at the beginning of the validation period": [[10, "derive-a-risk-map-at-the-beginning-of-the-validation-period"]], "7.1 Distance to forest edge at the beginning of the validation period": [[10, "distance-to-forest-edge-at-the-beginning-of-the-validation-period"]], "7.2 Raster of local deforestation rate at the beginning of the validation period": [[10, "raster-of-local-deforestation-rate-at-the-beginning-of-the-validation-period"]], "7.3 Risk map at the beginning of the validation period": [[10, "risk-map-at-the-beginning-of-the-validation-period"]], "8 Validation": [[10, "validation"]], "9 Final risk map": [[10, "final-risk-map"]], "Python API": [[11, "python-api"]], "Main functions": [[11, "module-riskmapjnr"]], "Plot functions": [[11, "module-riskmapjnr.plot"]], "Miscellaneous functions": [[11, "module-riskmapjnr.misc.miscellaneous"]]}, "indexentries": {"defor_cat() (in module riskmapjnr)": [[11, "riskmapjnr.defor_cat"]], "defrate_per_cat() (in module riskmapjnr)": [[11, "riskmapjnr.defrate_per_cat"]], "dist_edge_threshold() (in module riskmapjnr)": [[11, "riskmapjnr.dist_edge_threshold"]], "fcc123() (in module riskmapjnr.plot)": [[11, "riskmapjnr.plot.fcc123"]], "invlogit() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.invlogit"]], "local_defor_rate() (in module riskmapjnr)": [[11, "riskmapjnr.local_defor_rate"]], "main() (in module riskmapjnr.riskmapjnr)": [[11, "riskmapjnr.riskmapjnr.main"]], "make_dir() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.make_dir"]], "makemap() (in module riskmapjnr)": [[11, "riskmapjnr.makemap"]], "module": [[11, "module-riskmapjnr"], [11, "module-riskmapjnr.misc.miscellaneous"], [11, "module-riskmapjnr.plot"], [11, "module-riskmapjnr.riskmapjnr"]], "riskmap() (in module riskmapjnr.plot)": [[11, "riskmapjnr.plot.riskmap"]], "riskmapjnr": [[11, "module-riskmapjnr"]], "riskmapjnr.misc.miscellaneous": [[11, "module-riskmapjnr.misc.miscellaneous"]], "riskmapjnr.plot": [[11, "module-riskmapjnr.plot"]], "riskmapjnr.riskmapjnr": [[11, "module-riskmapjnr.riskmapjnr"]], "set_defor_cat_zero() (in module riskmapjnr)": [[11, "riskmapjnr.set_defor_cat_zero"]], "tree() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.tree"]], "validation() (in module riskmapjnr)": [[11, "riskmapjnr.validation"]]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"0. Definitions": [[6, "definitions"]], "1 Introduction": [[10, "introduction"]], "1 Preamble": [[7, "preamble"], [8, "preamble"], [9, "preamble"]], "1. Source Code": [[6, "source-code"]], "1.1 Importing Python modules": [[7, "importing-python-modules"], [8, "importing-python-modules"]], "1.1 Objective": [[10, "objective"]], "1.2 Forest cover change data": [[7, "forest-cover-change-data"], [8, "forest-cover-change-data"]], "1.2 Importing Python modules": [[10, "importing-python-modules"]], "1.3 Forest cover change data": [[10, "forest-cover-change-data"]], "10. Automatic Licensing of Downstream Recipients": [[6, "automatic-licensing-of-downstream-recipients"]], "11. Patents": [[6, "patents"]], "12. No Surrender of Others\u2019 Freedom": [[6, "no-surrender-of-others-freedom"]], "13. Use with the GNU Affero General Public License": [[6, "use-with-the-gnu-affero-general-public-license"]], "14. Revised Versions of this License": [[6, "revised-versions-of-this-license"]], "15. Disclaimer of Warranty": [[6, "disclaimer-of-warranty"]], "16. Limitation of Liability": [[6, "limitation-of-liability"]], "17. Interpretation of Sections 15 and 16": [[6, "interpretation-of-sections-15-and-16"]], "2 Deforestation risk and distance to forest edge": [[10, "deforestation-risk-and-distance-to-forest-edge"]], "2 Derive the deforestation risk map": [[7, "derive-the-deforestation-risk-map"]], "2 Deriving the deforestation risk map": [[8, "deriving-the-deforestation-risk-map"]], "2 Sequential computing": [[9, "sequential-computing"]], "2. Basic Permissions": [[6, "basic-permissions"]], "3 Local deforestation rate": [[10, "local-deforestation-rate"]], "3 Parallel computing": [[9, "id1"]], "3 Results": [[7, "results"], [8, "results"]], "3. Protecting Users\u2019 Legal Rights From Anti-Circumvention Law": [[6, "protecting-users-legal-rights-from-anti-circumvention-law"]], "3.1 Deforestation risk and distance to forest edge": [[7, "deforestation-risk-and-distance-to-forest-edge"], [8, "deforestation-risk-and-distance-to-forest-edge"]], "3.2 Model comparison": [[7, "model-comparison"], [8, "model-comparison"]], "3.3 Model performance": [[7, "model-performance"], [8, "model-performance"]], "3.4 Risk map of deforestation": [[7, "risk-map-of-deforestation"], [8, "risk-map-of-deforestation"]], "4 Pixels with zero risk of deforestation": [[10, "pixels-with-zero-risk-of-deforestation"]], "4 Results": [[9, "results"]], "4. Conveying Verbatim Copies": [[6, "conveying-verbatim-copies"]], "5 Categories of deforestation risk": [[10, "categories-of-deforestation-risk"]], "5. Conveying Modified Source Versions": [[6, "conveying-modified-source-versions"]], "6 Deforestation rates per category of risk": [[10, "deforestation-rates-per-category-of-risk"]], "6. Conveying Non-Source Forms": [[6, "conveying-non-source-forms"]], "7 Derive a risk map at the beginning of the validation period": [[10, "derive-a-risk-map-at-the-beginning-of-the-validation-period"]], "7. Additional Terms": [[6, "additional-terms"]], "7.1 Distance to forest edge at the beginning of the validation period": [[10, "distance-to-forest-edge-at-the-beginning-of-the-validation-period"]], "7.2 Raster of local deforestation rate at the beginning of the validation period": [[10, "raster-of-local-deforestation-rate-at-the-beginning-of-the-validation-period"]], "7.3 Risk map at the beginning of the validation period": [[10, "risk-map-at-the-beginning-of-the-validation-period"]], "8 Validation": [[10, "validation"]], "8. Termination": [[6, "termination"]], "9 Final risk map": [[10, "final-risk-map"]], "9. Acceptance Not Required for Having Copies": [[6, "acceptance-not-required-for-having-copies"]], "All steps": [[10, "all-steps"]], "Articles": [[0, "articles"]], "Attribution": [[2, "attribution"]], "Changelog": [[1, "changelog"]], "Code of conduct": [[2, "code-of-conduct"]], "Community guidelines": [[3, "community-guidelines"]], "Contribute to code": [[3, "contribute-to-code"]], "Contributing": [[4, "contributing"]], "Enforcement": [[2, "enforcement"]], "GNU General Public License": [[6, "gnu-general-public-license"]], "Get Started": [[7, "get-started"]], "How to Apply These Terms to Your New Programs": [[6, "how-to-apply-these-terms-to-your-new-programs"]], "Indices and tables": [[5, "indices-and-tables"]], "Installation": [[4, "installation"]], "Installation testing": [[4, "installation-testing"]], "Kenya": [[8, "kenya"]], "License": [[6, "license"]], "Main functionalities": [[4, "main-functionalities"]], "Main functions": [[11, "module-riskmapjnr"]], "Miscellaneous functions": [[11, "module-riskmapjnr.misc.miscellaneous"]], "Our Pledge": [[2, "our-pledge"]], "Our Responsibilities": [[2, "our-responsibilities"]], "Our Standards": [[2, "our-standards"]], "Overview": [[4, "overview"]], "Parallel computing": [[9, "parallel-computing"]], "Plot functions": [[11, "module-riskmapjnr.plot"]], "Preamble": [[6, "preamble"]], "Python API": [[11, "python-api"]], "Report an issue": [[3, "report-an-issue"]], "Scope": [[2, "scope"]], "Statement of Need": [[4, "statement-of-need"]], "TERMS AND CONDITIONS": [[6, "terms-and-conditions"]], "Table of contents": [[4, "table-of-contents"]], "Using conda (recommended)": [[4, "using-conda-recommended"]], "Using virtualenv": [[4, "using-virtualenv"]], "riskmapjnr 0.1": [[1, "riskmapjnr-0-1"]], "riskmapjnr 1.0": [[1, "riskmapjnr-1-0"]], "riskmapjnr 1.1": [[1, "riskmapjnr-1-1"]], "riskmapjnr 1.2": [[1, "riskmapjnr-1-2"]], "riskmapjnr 1.2.1": [[1, "riskmapjnr-1-2-1"]], "riskmapjnr Python package": [[4, "riskmapjnr-python-package"]]}, "docnames": ["articles", "changelog", "code_of_conduct", "contributing", "index", "indices", "license", "notebooks/get_started", "notebooks/kenya", "notebooks/parallel", "notebooks/steps", "reference"], "envversion": {"sphinx": 61, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1}, "filenames": ["articles.rst", "changelog.rst", "code_of_conduct.rst", "contributing.rst", "index.rst", "indices.rst", "license.rst", "notebooks/get_started.rst", "notebooks/kenya.rst", "notebooks/parallel.rst", "notebooks/steps.rst", "reference.rst"], "indexentries": {"defor_cat() (in module riskmapjnr)": [[11, "riskmapjnr.defor_cat", false]], "defrate_per_cat() (in module riskmapjnr)": [[11, "riskmapjnr.defrate_per_cat", false]], "dist_edge_threshold() (in module riskmapjnr)": [[11, "riskmapjnr.dist_edge_threshold", false]], "fcc123() (in module riskmapjnr.plot)": [[11, "riskmapjnr.plot.fcc123", false]], "invlogit() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.invlogit", false]], "local_defor_rate() (in module riskmapjnr)": [[11, "riskmapjnr.local_defor_rate", false]], "main() (in module riskmapjnr.riskmapjnr)": [[11, "riskmapjnr.riskmapjnr.main", false]], "make_dir() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.make_dir", false]], "makemap() (in module riskmapjnr)": [[11, "riskmapjnr.makemap", false]], "module": [[11, "module-riskmapjnr", false], [11, "module-riskmapjnr.misc.miscellaneous", false], [11, "module-riskmapjnr.plot", false], [11, "module-riskmapjnr.riskmapjnr", false]], "riskmap() (in module riskmapjnr.plot)": [[11, "riskmapjnr.plot.riskmap", false]], "riskmapjnr": [[11, "module-riskmapjnr", false]], "riskmapjnr.misc.miscellaneous": [[11, "module-riskmapjnr.misc.miscellaneous", false]], "riskmapjnr.plot": [[11, "module-riskmapjnr.plot", false]], "riskmapjnr.riskmapjnr": [[11, "module-riskmapjnr.riskmapjnr", false]], "set_defor_cat_zero() (in module riskmapjnr)": [[11, "riskmapjnr.set_defor_cat_zero", false]], "tree() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.tree", false]], "validation() (in module riskmapjnr)": [[11, "riskmapjnr.validation", false]]}, "objects": {"": [[11, 0, 0, "-", "riskmapjnr"]], "riskmapjnr": [[11, 1, 1, "", "defor_cat"], [11, 1, 1, "", "defrate_per_cat"], [11, 1, 1, "", "dist_edge_threshold"], [11, 1, 1, "", "local_defor_rate"], [11, 1, 1, "", "makemap"], [11, 0, 0, "-", "plot"], [11, 0, 0, "-", "riskmapjnr"], [11, 1, 1, "", "set_defor_cat_zero"], [11, 1, 1, "", "validation"]], "riskmapjnr.misc": [[11, 0, 0, "-", "miscellaneous"]], "riskmapjnr.misc.miscellaneous": [[11, 1, 1, "", "invlogit"], [11, 1, 1, "", "make_dir"], [11, 1, 1, "", "tree"]], "riskmapjnr.plot": [[11, 1, 1, "", "fcc123"], [11, 1, 1, "", "riskmap"]], "riskmapjnr.riskmapjnr": [[11, 1, 1, "", "main"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "function", "Python function"]}, "objtypes": {"0": "py:module", "1": "py:function"}, "terms": {"": [2, 3, 4, 6, 8, 9, 10, 11], "0": [7, 8, 9, 10, 11], "00": [8, 9], "002166880478294053": 10, "01": 10, "01469e": 8, "0195": 8, "02": 9, "02736e": 8, "02m": 9, "0456": 8, "05": 8, "0536": 7, "0586": 8, "0595107240968078": 10, "06": [8, 9], "0685": 8, "07": 8, "09": 10, "1": [2, 11], "10": [7, 9, 10, 11], "100": [7, 8, 9, 10, 11], "1000": [10, 11], "10000": [10, 11], "10001": 10, "1001": [8, 10], "102": 10, "1020": 11, "1024": [7, 8, 9, 10], "1050": 11, "105430": 8, "10623292135671092": 10, "10755": 7, "1080": [7, 8, 9, 10, 11], "109451": 8, "10km": 11, "11": [7, 9, 10, 11], "1183": 7, "12": [7, 8, 9, 10], "120": [7, 8, 10, 11], "123": 11, "12770": 10, "128": [7, 9, 10, 11], "13": [7, 8, 9, 10], "13291": 8, "1334": 10, "1342": 10, "134504": 8, "13820": 8, "139": 11, "14": [7, 8, 9, 10], "147688": 8, "148": 7, "1487": 8, "149": 7, "1492": 10, "1492e": 8, "15": [7, 8, 9, 10], "150": [7, 8, 10, 11], "153559": 8, "1537": 8, "15542015960877786": 10, "1569": 8, "16": [7, 8, 10], "16140": 8, "165": 11, "16532": 8, "1654": 7, "166": 10, "1668": 10, "168": 10, "17": [7, 9, 10], "17080": 8, "17144e": 8, "17439": 8, "179341": 8, "18": [7, 8, 10], "180": [7, 8, 10, 11], "1836": 8, "19": [7, 10], "1909": 8, "1996": 6, "1e8": [7, 8, 10], "2": 11, "20": [6, 7, 10], "200": 8, "2000": [7, 10, 11], "2001": 10, "2006": 4, "2007": 6, "2010": [7, 8, 10, 11], "2013": 10, "2014": 8, "2015": 8, "2017": 10, "2018": 8, "2020": [7, 10, 11], "2021": 10, "20402": 8, "20524687620953053": 10, "21": [7, 10], "210": [7, 8, 10, 11], "22": [7, 10], "22398": 8, "2244": 10, "227": 11, "23": [7, 9, 10], "233": 7, "2334": 10, "23465": 8, "24": [8, 10], "240": [7, 8, 10, 11], "2416": 8, "24433538025668888": 10, "2481": 8, "2487": 8, "2489": 8, "24937": 10, "25": [8, 10], "2543": 10, "25463e": 8, "255": 11, "2554": 10, "2562": 8, "26": [10, 11], "26045e": 8, "260730": 8, "2645": 10, "2667": 10, "2670": 10, "2679": 10, "2682": 10, "2683": 10, "2684": 10, "26853": 8, "27": [7, 10, 11], "270": [7, 8, 10, 11], "2719": 8, "272463": 8, "2753727450970095": 10, "27575": 8, "28": [6, 7, 10, 11], "282": 10, "29": [6, 7, 9, 10], "29360": 8, "3": [3, 4, 11], "30": [4, 6, 7, 8, 9, 10, 11], "300": [7, 8, 10, 11], "3001": 10, "30219": 8, "3084": 8, "31": 10, "310": 10, "3119": 10, "3122e": 8, "326224": 8, "3279": 8, "33": 10, "330": [8, 11], "3334": 10, "334": 10, "34": 11, "3451": [8, 10], "35": 9, "35311e": 8, "35448e": 8, "35794523801272426": 10, "36": 7, "360": [8, 11], "361904": 10, "3636": 8, "36436": 8, "3667": 10, "37": [7, 8], "37574": 8, "377": 7, "38": [8, 10], "3827": 7, "38346": 8, "39": 10, "390": [8, 11], "39205e": 8, "4": [2, 11], "40": [7, 9, 10, 11], "400": 8, "4001": 10, "4005e": 8, "402": 7, "41": [7, 9], "417499": 8, "4192": 7, "420": [8, 11], "42141e": 8, "42276": 8, "4231": 8, "4296": 8, "43": [8, 10], "4334": 10, "4379": 10, "44": 10, "44488e": 8, "4459": 8, "45": [7, 9], "450": [8, 11], "4503": 10, "457": 10, "46": 7, "46102e": 8, "4667": 10, "4693": 7, "469736": 8, "47": 9, "4729": 8, "47431e": 8, "476": 10, "47735": 8, "48": [8, 9], "480": [8, 11], "481780": 8, "4833": 8, "4857": 7, "48813e": 8, "49": 8, "49449e": 8, "49798e": 8, "5": [7, 8, 9, 11], "50": [8, 10], "5000": 10, "500000": 11, "5051": 10, "50684e": 8, "51": 8, "510": [8, 11], "51334e": 8, "5197e": 8, "52150": 7, "52499e": 8, "5295": 8, "52983e": 8, "53": 7, "5334": 10, "53412e": 8, "53707": 8, "5374e": 8, "54": 10, "540": [8, 11], "54085e": 8, "54357e": 8, "54599e": 8, "54847e": 8, "5504": 8, "55049e": 8, "55232e": 8, "55389e": 8, "55538e": 8, "55692e": 8, "5661": 7, "5667": 10, "5677": 8, "57": 10, "570": [8, 11], "57576": 8, "583": 10, "5839": 8, "5856": 10, "58834": 8, "59": [7, 8, 10], "5932": 7, "6": [7, 8, 9, 11], "60": [6, 7, 8, 10, 11], "600": [8, 11], "6000": 10, "6038": 7, "61": [7, 10], "6158": 8, "6187": 7, "6274": 7, "63": 8, "630": [8, 11], "6304": 10, "6310": 7, "6331": 7, "6334": 10, "6345": 7, "6354": 7, "6358": 7, "6361": 8, "6369": 8, "639743": 8, "6490": 10, "6493": 8, "65535": [10, 11], "660": [8, 11], "6666": 8, "6667": 10, "6676": 7, "668": 10, "67": 8, "6845": 8, "69": [7, 11], "690": [8, 11], "6b": 6, "6d": 6, "7": [7, 8, 9], "7000": 10, "70682": 8, "71": [7, 8], "720": [8, 11], "72145": 8, "73": 7, "7334": 10, "7344": 7, "74223e": 8, "75": 8, "750": [8, 11], "7667": 10, "77": [7, 8], "7766": 10, "78": 8, "780": [8, 11], "7818": 7, "789": 10, "7901": 8, "7922": 10, "7994": 7, "8": [7, 8, 9, 11], "800": [7, 8, 10], "8000": 10, "8039": 8, "810": [8, 11], "82": 8, "83": [8, 10], "8334": 10, "840": [8, 10, 11], "85": 7, "86": 7, "8602": 7, "8628": 8, "8667": 10, "87": [7, 8], "870": [8, 11], "88": [7, 8], "884": 8, "8859": 8, "8894": 10, "89": [7, 8], "9": [7, 8, 9, 11], "90": [7, 8, 10, 11], "900": [8, 11], "9000": 10, "9053": 8, "91": 8, "92": [8, 10], "93": 7, "930": 11, "9333": 10, "9363": 10, "94": [7, 8], "95": [7, 8, 10], "9547": 8, "9564": 10, "957": 8, "96": 8, "960": 11, "9631": 10, "9667": 10, "967": 7, "968": 7, "97": [7, 8], "9732": 10, "98": [7, 8, 10], "9804": 8, "98440": 8, "9850": 8, "99": [7, 8, 10, 11], "990": 11, "A": [6, 10, 11], "AS": 6, "And": 6, "As": 10, "BE": 6, "BEING": 6, "BUT": 6, "BY": 6, "Being": 2, "But": 6, "By": 6, "FOR": 6, "For": [2, 4, 6, 10, 11], "IF": 6, "IN": 6, "If": [3, 6, 11], "In": [2, 4, 6, 10], "It": [6, 7, 8, 11], "NO": 6, "NOT": 6, "No": 11, "OF": 6, "OR": 6, "Of": [3, 6], "SUCH": 6, "Such": [4, 6], "THE": 6, "THERE": 6, "TO": 6, "The": [2, 3, 4, 6, 7, 8, 10, 11], "Then": 4, "There": 3, "To": [4, 6, 10], "WILL": 6, "WITH": 6, "With": [10, 11], "_": [7, 8, 11], "_ev": [7, 8, 11], "_v": 11, "aaron": 3, "abbrevi": 11, "abil": 6, "about": [2, 6], "abov": 6, "absenc": 6, "absolut": 6, "abus": [2, 6], "accept": 2, "access": [6, 7, 8], "accompani": 6, "accord": 6, "account": [2, 4], "accuraci": 4, "achiev": 6, "acknowledg": 6, "acquir": 6, "across": [4, 6], "act": 2, "action": [2, 6], "activ": [4, 6], "actual": 6, "ad": 6, "adapt": [2, 6], "add": [6, 11], "addit": [4, 10, 11], "address": [2, 6], "adopt": 6, "advanc": 2, "advantag": 1, "advers": 6, "advis": 6, "affect": 6, "affirm": 6, "after": [6, 10], "ag": 2, "against": [6, 9], "agg": 1, "aggreg": 6, "agre": [3, 4, 6], "agreement": 6, "aim": [4, 6], "al": 10, "algorithm": [4, 7, 8, 10, 11], "align": 2, "all": [0, 2, 4, 6, 7, 8, 11], "alleg": 6, "alloc": 4, "allow": [4, 6], "along": 6, "alpha": [1, 10], "alpha_1": 10, "alpha_2": 10, "alreadi": [6, 11], "also": [2, 4, 6, 7, 8, 10, 11], "altern": 6, "although": 6, "among": 6, "an": [2, 4, 6, 10, 11], "analysi": [7, 8, 9, 10, 11], "ancillari": 6, "ani": [2, 4, 6], "annual": 1, "answer": 2, "anybodi": [3, 4], "anyon": 6, "anyth": 6, "appear": 2, "appli": 2, "applic": 6, "appoint": 2, "approach": [4, 10, 11], "appropri": [2, 6], "approxim": [6, 10, 11], "ar": [2, 3, 4, 6, 7, 8, 10, 11], "arang": [7, 8, 9, 10, 11], "archipelago": [7, 10], "archiv": 4, "area": [1, 4, 6, 7, 8, 9, 10, 11], "argument": [9, 10, 11], "aris": 6, "arrai": 11, "arrang": 6, "articl": 6, "ask": 6, "assert": 6, "asset": 6, "assign": [10, 11], "associ": [6, 11], "assum": [6, 10, 11], "assumpt": 6, "assur": 6, "attach": 6, "attack": 2, "attempt": 6, "attent": 2, "attribut": 6, "author": 6, "avail": [2, 6, 9], "avoid": [6, 10, 11], "awai": 6, "b": [6, 10], "backend": 1, "ban": 2, "base": [4, 6, 10], "baselin": 4, "beam": 3, "becaus": [6, 10], "becom": 10, "been": [4, 6, 11], "befor": [10, 11], "begin": 11, "behalf": 6, "behavior": 2, "being": [6, 7, 8, 10, 11], "believ": 6, "belong": [7, 8, 10], "below": [6, 10, 11], "benchmark": [1, 4], "benefit": 6, "best": [2, 4, 6, 7, 8, 10, 11], "beta_j": 10, "between": [6, 7, 8, 10, 11], "beyond": [4, 6, 7, 8, 11], "bin": [4, 10, 11], "blk_row": [7, 8, 9, 10, 11], "block": [4, 11], "bodi": [2, 6], "bool": 11, "boolean": 11, "border": [7, 8, 10, 11], "border_fil": [7, 8, 9, 10], "both": [6, 7, 8, 10, 11], "boundari": 4, "box": 6, "branch": 3, "break": [10, 11], "brief": 6, "broader": 4, "bug": [1, 3], "build_ext": 4, "busi": 6, "byte": 11, "c": [4, 6], "cach": [7, 8, 9, 10], "calcul": 10, "calibr": [7, 8, 9, 10, 11], "call": [4, 6, 7, 8, 9, 11], "calval": 11, "can": [3, 4, 6, 7, 8, 10, 11], "cannot": 6, "carbon": 4, "carri": 6, "case": [6, 7, 10, 11], "cat": 10, "categor": [4, 7, 8, 10, 11], "categori": [4, 11], "caus": [4, 6], "cd": 4, "ceas": 6, "cell": [7, 8, 10, 11], "certain": 6, "certifi": 4, "cessat": 6, "chang": [3, 4, 6, 11], "character": 6, "characterist": 2, "charg": 6, "check": 11, "check_fcc": 11, "choos": 6, "chri": 3, "cirad": 2, "circumst": [2, 6], "civil": 6, "claim": 6, "clarifi": 2, "class": [6, 7, 8, 10, 11], "clean": [7, 8, 9, 11], "clear": [4, 6], "clearli": 6, "close": [1, 6, 10], "code": [4, 7, 9, 10], "col": 11, "collect": 6, "color": 11, "colorbar": 11, "com": 4, "combin": 6, "come": 6, "command": [4, 6], "comment": 2, "commerci": 6, "commit": [2, 3, 6], "common": [2, 6], "commun": [2, 4, 6], "compar": [10, 11], "comparison": 11, "compil": 6, "complaint": 2, "complet": 11, "compli": 6, "complianc": 6, "compon": 6, "comput": [0, 1, 4, 6, 7, 8, 10, 11], "concern": 6, "conda": [7, 8, 9, 10], "conduct": [3, 4], "confidenti": 2, "config": 4, "confirm": 11, "connect": 6, "consequ": [6, 10], "consequenti": 6, "consid": [2, 6, 7, 8, 9, 10, 11], "consist": [4, 6], "conspicu": 6, "constant": 11, "constantli": 6, "constitut": 6, "constru": 6, "construct": 2, "consum": 6, "contact": [2, 6], "contain": [6, 10, 11], "content": 6, "context": [4, 6], "continu": [6, 10], "contractu": 6, "contradict": 6, "contrast": 6, "contribut": 2, "contributor": [2, 3, 4, 6], "control": 6, "conveni": 6, "convert": 10, "convey": 6, "copyleft": 6, "copyright": 6, "correct": [1, 2, 4, 6, 10, 11], "correctli": [4, 11], "correspond": [6, 10, 11], "cost": 6, "could": [2, 6], "counterclaim": 6, "countri": [1, 4, 6], "cours": 6, "court": 6, "coven": [2, 6], "cover": [4, 6, 11], "coverag": 6, "cpu": [7, 8, 9, 11], "cpu_count": [7, 8, 9], "creat": [2, 3, 4, 7, 8, 9, 10, 11], "creation": 4, "credit": 4, "criterion": 6, "critic": 2, "cross": 6, "csize": [7, 8, 9, 10, 11], "csize_km": 11, "csv": [10, 11], "ctry_border_glp": [7, 9, 10], "ctry_border_ken": 8, "cum": 11, "cumul": [7, 8, 10, 11], "cure": 6, "current": [10, 11], "custom": 6, "customarili": 6, "cval": 11, "d": [6, 10], "dai": 6, "damag": 6, "danger": 6, "data": [4, 6, 9, 11], "date": [3, 6, 10, 11], "deactiv": 4, "decemb": 6, "decid": 6, "declin": 6, "decreas": 10, "deem": [2, 6], "default": [3, 11], "defect": 6, "defens": 6, "defin": [2, 6, 11], "defor_cat": [4, 10, 11], "defor_threshold": 11, "defor_valu": [10, 11], "deforest": [1, 4, 11], "deforisk": 1, "defrate_per_cat": [4, 10, 11], "defrate_per_cat_w": 11, "degrad": 4, "delet": [4, 11], "deni": 6, "denomin": 6, "depend": 4, "depriv": 6, "deriv": [4, 9], "derogatori": 2, "descart": 4, "describ": 10, "descript": [4, 11], "design": 6, "detail": [2, 4, 6, 7, 8], "determin": [2, 4, 6, 10], "dev": 4, "develop": [3, 4, 6], "devic": 6, "dez\u00e9cach": 10, "dictionari": 11, "dictionnari": 10, "differ": [2, 4, 6, 10, 11], "differenci": 11, "dimension": 11, "dir_path": 11, "direct": 6, "directli": 6, "directori": [4, 7, 8, 9, 10, 11], "disabl": 2, "discriminatori": 6, "discuss": [3, 10, 11], "disk": 10, "displac": 4, "displai": [1, 6], "dist_bin": [7, 8, 9, 10, 11], "dist_edg": [10, 11], "dist_edge_c": 11, "dist_edge_ev": 11, "dist_edge_thr": 10, "dist_edge_threshold": [4, 10, 11], "dist_edge_v": [10, 11], "dist_fil": [10, 11], "dist_file_avail": 11, "dist_thresh": [7, 8, 10, 11], "dist_v_fil": 10, "dist_valu": 10, "distanc": [1, 4, 11], "distinguish": 6, "distribut": [4, 6], "divid": 4, "do": [2, 3, 6, 10], "document": [1, 3, 6], "doe": [6, 11], "domain": 6, "don": 10, "dot": 2, "doubt": 6, "down": 11, "dpi": [7, 8, 9, 10, 11], "due": [10, 11], "durabl": 6, "dure": 11, "dwell": 6, "dynam": 6, "e": [2, 4, 6, 11], "ea": [7, 8, 9, 11], "each": [6, 9, 10, 11], "earlier": 6, "ecologi": [4, 11], "econom": 2, "edg": [4, 11], "edit": 2, "educ": 2, "effect": 6, "effort": 6, "eg": 4, "ei": [7, 8, 9, 11], "either": [4, 6, 11], "electron": [2, 6], "embodi": 6, "emiss": 4, "empathi": 2, "employ": 6, "enabl": 6, "end": [1, 6, 11], "endval": [7, 8, 11], "enforc": 6, "ensur": [4, 6, 10], "enter": 6, "entir": [4, 6, 11], "entiti": 6, "entri": 11, "env": [4, 7, 8, 9, 10], "environ": [2, 4, 7, 8, 9, 10], "environment": [7, 8, 9, 10], "equal": [7, 8, 9, 10, 11], "equival": 6, "erron": 6, "error": [7, 8, 10, 11], "essenti": 6, "establish": 4, "estim": [1, 4, 10, 11], "et": 10, "ethnic": 2, "euclidean": 11, "even": 6, "event": [2, 6], "ever": 6, "everi": [3, 4, 6], "everyon": [2, 6], "exact": 6, "exampl": [2, 3, 6, 11], "except": [6, 11], "exclud": [6, 11], "exclus": 6, "excus": 6, "execut": [1, 4, 6], "exercis": 6, "exist": 11, "exp": 11, "expect": [2, 6], "experi": 2, "explain": [6, 10], "explicit": 2, "explicitli": 6, "express": [2, 6], "expressli": 6, "extend": 6, "extens": 6, "extent": [4, 6], "f": [6, 7, 8, 9, 10], "face": 2, "facil": 6, "fail": 6, "failur": 6, "fair": [2, 6], "faith": 2, "fall": 10, "fals": [7, 8, 9, 10, 11], "famili": 6, "faq": 2, "farther": [7, 8, 10], "fashion": 6, "fast": 4, "favor": [4, 6], "fcc": 11, "fcc123": [7, 8, 10, 11], "fcc123_glp": [7, 9, 10], "fcc123_ken_101418": 8, "fcc_file": [1, 7, 8, 9, 10, 11], "featur": [3, 6], "fee": 6, "fifth": 10, "fig_fcc123": [7, 8, 10], "fig_file_dist": [10, 11], "fig_file_pr": [10, 11], "figsiz": [7, 8, 9, 10, 11], "figur": [7, 8, 10, 11], "file": [1, 4, 6, 7, 8, 10, 11], "final": [1, 6], "find": 6, "first": [1, 4, 6, 7, 8, 10, 11], "fit": 6, "fix": 6, "flake8": 4, "flow": 6, "focal": 11, "focus": [2, 10], "folium": 4, "follow": [2, 3, 4, 6, 7, 8, 10, 11], "forbid": 6, "forc": 6, "forest": [1, 4, 9, 11], "forg": 4, "fork": 3, "format": 6, "formula": [1, 10], "foster": 2, "found": [1, 6], "foundat": 6, "fourth": 10, "fr": [2, 4, 11], "framework": 4, "free": [2, 3, 6], "frel": 4, "frequenc": 10, "from": [2, 3, 4, 7, 8, 9, 10, 11], "fsf": 6, "fulfil": 6, "full": [6, 7, 9, 11], "fullhist": [7, 8, 11], "function": [3, 6, 7, 8, 9, 10], "fundament": 6, "further": [2, 6], "futur": [3, 6, 11], "g": [4, 11], "ga": 4, "gdal": [4, 7, 8, 9, 10], "gdal_cachemax": [7, 8, 9, 10], "gdal_proxim": 11, "gender": 2, "generic_filt": 11, "geograph": 4, "geopanda": 4, "geoprocess": 4, "georeferenc": 4, "get": [0, 4, 6, 10], "get_ldefz_v": 10, "get_riskmap_v": 10, "ghg": 4, "ghislain": [2, 7, 8, 9, 10], "ghislainv": [4, 11], "git": 3, "github": [3, 4], "give": 6, "given": [4, 6, 10, 11], "global": 4, "gmtime": [8, 9], "gnu": [3, 4], "good": [2, 3], "govern": [4, 6], "gpkg": [7, 8, 9, 10], "gpl": [3, 4, 6], "gracefulli": 2, "grant": 6, "graph": [7, 8, 10], "grati": 6, "greater": [10, 11], "greatest": 6, "green": [7, 8, 10], "greenhous": 4, "grid": [7, 8, 10, 11], "grinand": 10, "grown": 4, "gt": 10, "guadeloup": [7, 10], "guarante": 6, "gui": 6, "guid": 3, "guidelin": 4, "h": [8, 9], "ha": [3, 4, 6, 7, 8, 10, 11], "had": 6, "harass": 2, "harm": 2, "have": [2, 4, 7, 8, 10, 11], "hectar": 11, "here": [4, 9, 10], "hereaft": 6, "high": [4, 10], "higher": 4, "histor": [7, 9, 10, 11], "hold": 11, "holder": 6, "home": [7, 8, 9, 10], "hope": 6, "host": 6, "household": 6, "how": [3, 4, 7, 8], "howev": 6, "html": [2, 6], "http": [2, 4, 6, 11], "hypothet": 6, "i": [1, 2, 3, 4, 6, 7, 8, 9, 10, 11], "idea": 6, "ident": [2, 7, 8, 10], "identifi": [6, 7, 8, 10, 11], "ifil": [7, 8], "ii": [10, 11], "iii": 10, "imag": 11, "imageri": 2, "implement": [6, 11], "impli": [6, 10], "import": [3, 6, 9, 11], "impos": [6, 10], "improv": [1, 3, 10, 11], "inabl": 6, "inaccur": 6, "inappropri": 2, "inc": 6, "inch": 11, "incid": 2, "incident": 6, "includ": [2, 4, 6, 7, 8, 10, 11], "inclus": [2, 6], "incompat": 6, "incorpor": [3, 4, 6], "increas": [7, 8, 9, 10, 11], "inde": 10, "indemnif": 6, "independ": [6, 10], "index": 5, "indic": [6, 7, 8, 10, 11], "individu": [2, 6], "industri": 6, "inform": [2, 4, 6], "infring": 6, "initi": 6, "input": [4, 10, 11], "input_fcc_rast": [7, 8, 10, 11], "input_fil": 10, "input_risk_map": [7, 8, 10, 11], "insid": [6, 10], "instal": 6, "instanc": 2, "instead": 6, "insult": 2, "int": 11, "intact": 6, "integ": [10, 11], "integr": 4, "intend": 6, "intent": 6, "interact": 6, "interchang": 6, "interest": [2, 3, 4, 6], "interf": 6, "interfac": 6, "interv": [7, 8, 9, 10, 11], "intim": 6, "invalid": 6, "invers": 11, "investig": 2, "invlogit": 11, "irrevoc": 6, "issu": [1, 2], "item": 6, "its": [2, 4, 6], "itself": 6, "j": 10, "jedi": 4, "jnr": [4, 7, 8, 10, 11], "join": [1, 7, 8, 10], "june": 6, "jupyt": 4, "jurisdict": [1, 4, 10], "just": [4, 11], "keep": [3, 6], "kei": 6, "kenya": 0, "kernel": 6, "keyword": 11, "kilomet": 11, "kind": 6, "km": [7, 8, 10, 11], "know": 6, "knowingli": 6, "knowledg": 6, "known": [4, 10], "kwarg": 11, "lage": 11, "landscap": [10, 11], "languag": [2, 6], "larg": [1, 4], "larger": 6, "largest": 4, "later": 6, "latest": [7, 8, 9, 10], "launch": 4, "lawsuit": 6, "ldefrat": 10, "ldefrate_fil": [10, 11], "ldefrate_w": 11, "ldefrate_with_zero": [10, 11], "ldefrate_with_zero_fil": [10, 11], "ldefrate_with_zero_v": 10, "ldefrate_with_zero_v_fil": 10, "ldefrate_with_zero_w": 11, "lead": 10, "leadership": 2, "leakag": 4, "learn": 3, "least": [6, 10], "led": 4, "legend": [7, 8, 10, 11], "length": 11, "length_limit": 11, "leq": 10, "lesser": 6, "let": 1, "level": [2, 4, 10, 11], "lgpl": 6, "liabl": 6, "librari": 6, "licens": [3, 4], "license": 6, "licensor": 6, "like": 6, "likewis": 6, "limit": 11, "limit_to_directori": 11, "line": [6, 7, 8, 10, 11], "linewidth": [7, 8, 10], "link": 6, "list": [6, 11], "litig": 6, "load": 9, "local": [4, 6, 11], "local_defor_r": [4, 10, 11], "locat": [7, 8, 10], "logic": 11, "logit": 11, "long": 6, "look": [7, 8], "loss": 6, "low": 10, "lower": [4, 7, 8, 10, 11], "lowest": [7, 8], "m": [4, 7, 8, 9, 10, 11], "m_hat": [7, 8, 11], "machin": 6, "made": [3, 6, 10], "mai": [2, 6], "mail": [2, 6], "maintain": [2, 6], "major": [6, 10], "make": [1, 2, 3, 6, 11], "make_dir": [7, 8, 9, 10, 11], "makemap": [1, 7, 8, 9, 11], "mani": 3, "manner": 6, "manufactur": 6, "map": [1, 4, 9, 11], "march": 6, "mark": 6, "mask": 6, "master": [3, 4], "materi": 6, "matplotlib": [1, 4, 10, 11], "matrix": 4, "maxim": 11, "maximum": [9, 11], "maxpixel": [7, 8, 10, 11], "mean": [6, 7, 8, 10, 11], "measur": 6, "media": 2, "medium": 6, "meet": 6, "member": 2, "memori": [4, 11], "menu": 6, "merchant": 6, "mere": 6, "merg": 6, "messag": [3, 11], "met": 6, "method": [6, 7, 8, 9, 10, 11], "methodologi": [4, 7, 8, 10, 11], "meurer": 3, "might": 6, "miniconda3": [4, 7, 8, 9, 10], "minim": [4, 11], "minimum": 10, "misrepresent": 6, "mitig": 4, "mkdir": 4, "mod_comp": [7, 8, 11], "modcomp": [7, 8, 11], "mode": [6, 11], "model": [6, 9, 11], "modif": 6, "modul": [5, 9], "monitor": 4, "monoton": 11, "more": [6, 7, 8, 10], "moreov": 6, "most": [6, 10], "move": [4, 7, 8, 10, 11], "mp": [7, 8, 9], "multiprocess": [7, 8, 9], "must": [1, 3, 4, 6, 10, 11], "n": [7, 8, 10], "name": [4, 6, 11], "nation": [2, 4], "natur": [6, 10, 11], "nb": 11, "ncat": [7, 8, 9, 10, 11], "ncell": 11, "ncpu": [7, 8, 9, 11], "ndefor": 10, "necessari": [2, 6, 11], "need": [6, 7, 8, 9, 10], "neg": 11, "neglig": [4, 7, 8, 10], "neither": 6, "nest": 4, "network": 6, "new": [1, 3, 11], "newdir": 11, "next": 6, "nfor": 10, "no_quantity_error": [7, 8, 9, 10, 11], "nodata": [1, 7, 8, 10, 11], "non": 1, "noncommerci": 6, "none": [9, 11], "nor": 6, "normal": [6, 10, 11], "note": 10, "noth": 6, "notic": 6, "notifi": 6, "notwithstand": 6, "np": [7, 8, 9, 10, 11], "npix": 11, "npixel": [7, 8, 10], "null": 11, "number": [4, 6, 7, 8, 9, 10, 11], "numpi": [4, 7, 8, 9, 10, 11], "o": [7, 8, 9, 10], "object": [6, 11], "oblig": [2, 6], "observ": [7, 8, 10, 11], "obtain": [4, 7, 8, 10, 11], "occasion": 6, "occur": [6, 7, 8, 10], "odd": 11, "offens": 2, "offer": 6, "offici": [2, 6], "offlin": 2, "ofil": [7, 8, 10], "onc": 10, "one": [6, 9, 10, 11], "onli": [4, 6, 7, 10, 11], "onlin": 2, "open": [2, 3, 4], "oper": [4, 6], "option": [4, 6, 11], "orang": [7, 8, 10], "order": 6, "org": [2, 6], "organ": 6, "orient": 2, "origin": 6, "other": [2, 4, 10, 11], "otherwis": [2, 6], "our": [4, 6], "out": 6, "out_dir": [7, 8, 9, 10], "output": [1, 6, 11], "output_dir": [7, 8, 9, 11], "output_fil": [7, 8, 10, 11], "outputs_get_start": 7, "outputs_kenya": 8, "outputs_parallel": 9, "outputs_step": 10, "outsid": [4, 6], "over": 11, "overflow": 11, "own": 6, "packag": [1, 3, 6, 7, 8, 10, 11], "page": [3, 5], "panda": [4, 7, 8, 9, 10], "paper": 6, "paragraph": 6, "parallel": [0, 1, 7, 8, 11], "paramet": 11, "parent": 11, "part": 6, "parti": 6, "particip": 2, "particular": 6, "pass": 6, "password": 6, "past": [4, 10], "path": [7, 8, 10, 11], "pathwai": 4, "pattern": 6, "payment": 6, "pd": [7, 8, 9, 10], "peer": 6, "peform": 11, "per": 11, "perc": 11, "perc_dist": [7, 8, 10, 11], "perc_dist_c": 11, "percent": 11, "percentag": [7, 8, 10, 11], "perform": [4, 6, 11], "period": [1, 4, 7, 8, 9, 11], "perman": [2, 6], "permiss": 2, "permit": 6, "perpetu": 6, "person": [2, 6], "pertin": 6, "philosophi": 6, "physic": [2, 6], "piec": 6, "pip": 4, "pixel": [7, 8, 11], "pkg_resourc": [7, 8, 9, 10], "place": 6, "pleas": [3, 6], "plot": [7, 8, 10], "plt": 10, "plu": [6, 11], "plugin": 1, "png": [7, 8, 10, 11], "point": 11, "pointer": 6, "polici": 2, "polit": 2, "pontiu": 10, "pool": 1, "portion": 6, "posit": [2, 11], "possess": 6, "possibl": 6, "post": 2, "power": 6, "pr": 3, "practic": 6, "precis": [6, 10], "pred_ob": [10, 11], "pred_obs_w": [7, 8, 11], "predecessor": 6, "predict": [7, 8, 10, 11], "predomin": 11, "prefer": 6, "present": [6, 10, 11], "preserv": 6, "prevent": 6, "previou": [6, 10], "previous": [10, 11], "price": 6, "primarili": 6, "print": [7, 8, 9, 10, 11], "prior": 6, "privat": [2, 6], "prob": 11, "probabl": 11, "problem": 6, "procedur": [6, 10], "process": 4, "procur": 6, "produc": [6, 10, 11], "product": 6, "profession": 2, "program": 4, "programm": 6, "prohibit": 6, "proj": [7, 8, 9, 10], "proj_lib": [7, 8, 9, 10], "project": [1, 2, 3, 4, 11], "promin": 6, "propag": 6, "properti": 6, "proprietari": 6, "protocol": 6, "prove": 6, "provid": [3, 4, 6, 7, 8, 10, 11], "provis": 6, "provision": 6, "proxi": 6, "public": 2, "publicli": 6, "publish": [2, 6], "pull": 3, "purpos": 6, "pursuant": 6, "push": 3, "py": 1, "pyenv": [7, 8, 9, 10], "pypi": 4, "pyplot": 10, "python": [3, 9], "python3": 4, "qgi": 1, "qualifi": 6, "qualiti": 6, "quantiti": [10, 11], "question": 2, "r": 4, "race": 2, "rais": 11, "rang": [10, 11], "rapidli": 10, "raster": [4, 7, 8, 11], "rate": [1, 4, 11], "read": 6, "readabl": 6, "readi": 6, "readili": 6, "reason": [2, 6], "receipt": 6, "receiv": 6, "recent": [7, 8, 10], "recogn": 6, "recurs": 11, "red": [7, 8, 10], "redd": 4, "redistribut": 6, "reduc": 4, "reduct": 4, "refer": [4, 6], "refrain": 6, "regard": [2, 6], "regardless": [2, 6], "regener": 6, "region": 11, "regular": 11, "reinstat": 6, "reject": 2, "relationship": [6, 7, 8, 10, 11], "releas": [1, 3, 4, 6], "relev": 6, "reli": 6, "relicens": 6, "religion": 2, "remain": [6, 7, 8, 10, 11], "remov": [1, 2, 4, 6], "render": 6, "repair": 6, "repeat": 10, "repercuss": 2, "report": [2, 7, 8, 10], "repositori": [3, 4], "repres": [2, 4, 6, 10, 11], "represent": 2, "request": 3, "requir": 4, "rescal": 11, "rescale_max_v": 11, "rescale_min_v": 11, "resolut": [4, 10, 11], "resolv": 6, "resource_filenam": [7, 9, 10], "respect": [2, 6], "respons": 6, "restrict": 6, "result": [2, 6, 10], "results_makemap": [7, 8, 9], "retain": 6, "return": [4, 6, 10, 11], "review": [2, 6], "rgba": 11, "right": 2, "risk": [1, 4, 6, 9, 11], "riskmap": [7, 8, 10, 11], "riskmap_fig": [7, 8, 10], "riskmap_fil": [10, 11], "riskmap_v": 10, "riskmap_v_fil": 10, "riskmap_w": [7, 8, 11], "riskmapjnr": [3, 7, 8, 9, 10, 11], "riskmapknr": 11, "rm": 4, "rmj": [4, 7, 8, 9, 10], "rom": 6, "root": [7, 8, 10, 11], "row": 11, "royalti": 6, "rule": 6, "run": [1, 4, 6, 7, 8, 9, 10, 11], "safest": 6, "sai": 6, "sake": 6, "sale": 6, "same": [6, 10, 11], "satisfi": 6, "save": [7, 8, 9, 10], "scalar": 11, "scale": 4, "school": 6, "scientif": 4, "scipi": [4, 11], "scope": 6, "script": 6, "search": 5, "sec_par": 9, "sec_seq": [8, 9], "second": [7, 8, 10, 11], "secondarili": 6, "sector": 4, "see": [2, 4, 6, 10, 11], "seem": [7, 8], "select": [4, 11], "sell": 6, "semiconductor": 6, "sensu": 10, "sepal": 1, "separ": [2, 6], "sequenc": [7, 8], "sequenti": 11, "seri": 3, "serv": 6, "server": 6, "servic": 6, "set": [1, 2, 7, 8, 9, 10, 11], "set_defor_cat_zero": [1, 4, 10, 11], "sever": [4, 7, 8, 9, 10, 11], "sex": 2, "sexual": 2, "shall": 6, "share": [6, 7, 8, 9, 10], "short": [4, 6], "should": [3, 4, 6, 10], "show": [2, 6, 7, 8, 10], "sign": 6, "signific": 6, "silent": 11, "similar": 6, "simplic": 4, "simultan": 6, "sinc": 4, "singl": 6, "size": [2, 4, 7, 8, 9, 10, 11], "slice": [4, 7, 8, 9, 10, 11], "slower": 11, "small": 11, "smallest": 10, "so": [6, 10, 11], "social": 2, "socio": 2, "softwar": 6, "sold": 6, "sole": 6, "some": [6, 10, 11], "sourc": [3, 4, 11], "space": [2, 10], "spare": 6, "spatial": [4, 7, 8, 10, 11], "speak": 6, "special": 6, "specif": [2, 6, 10], "specifi": 6, "speed": [7, 8, 9, 10], "sphinx": 4, "spirit": 6, "spread": 10, "squar": [7, 8, 10, 11], "stabl": 1, "stand": 6, "standard": [4, 6], "start": [0, 1, 3, 4, 6, 10, 11], "start_tim": [8, 9], "state": 6, "statement": 6, "static": 4, "statu": [2, 6], "step": [0, 1, 3, 4, 6, 7, 8, 9, 11], "storag": 6, "straightforward": 4, "strftime": [8, 9], "stride": 11, "structur": 11, "stuctur": 11, "studi": [7, 10], "subdivid": 6, "subject": 6, "sublicens": 6, "submit": 3, "subnat": 4, "subprogram": 6, "subroutin": 6, "subsect": 6, "substanti": 6, "sue": 6, "suffic": 6, "suffici": 10, "suggest": 10, "sum": 11, "supplement": 6, "support": 6, "sure": [1, 6], "surfac": 11, "surviv": 6, "sustain": 6, "system": 6, "systemat": 6, "t": 10, "t1": 11, "t2": 11, "t3": 11, "t_1": 10, "t_2": 10, "tab_dist": 10, "tab_file_defr": [10, 11], "tab_file_dist": [10, 11], "tab_file_pr": [10, 11], "tabl": [7, 8, 10, 11], "tabul": [7, 8, 9, 10], "take": [2, 6], "taken": 9, "tangibl": 6, "tau": 10, "team": 2, "technolog": 6, "tell": 6, "temporari": 2, "temporarili": 2, "ten": [10, 11], "termin": [4, 11], "test": [1, 3, 10], "than": [6, 7, 8, 10, 11], "thei": [2, 4, 6], "them": [6, 11], "therefor": 6, "theshold": [7, 8], "theta": 10, "thi": [1, 2, 3, 4, 7, 8, 10, 11], "thing": 6, "third": [6, 10], "thoroughli": 1, "those": 6, "though": 6, "thousand": [10, 11], "threaten": [2, 6], "three": [6, 10, 11], "threshold": [7, 8, 10, 11], "through": [4, 6], "throughout": 4, "thu": [6, 10], "tif": [7, 8, 9, 10, 11], "time": [6, 8, 9, 10, 11], "time_interv": [7, 8, 9, 10, 11], "togeth": 10, "too": 6, "took": 9, "tool": [4, 6], "tot_def": 11, "total": [10, 11], "toward": 2, "tradabl": 4, "trade": 6, "trademark": 6, "transact": 6, "transfer": 6, "transform": 4, "transmiss": 6, "treat": 6, "treati": 6, "tree": 11, "troll": 2, "tropic": 10, "true": [7, 8, 9, 10, 11], "turn": 4, "tutori": [1, 3, 4, 10], "two": [6, 10, 11], "type": [6, 10, 11], "typic": [6, 11], "uint16": [10, 11], "unaccept": [2, 6], "under": [3, 4, 6, 11], "uniform_filt": 11, "unit": 11, "unless": 6, "unlimit": 6, "unmodifi": 6, "unnecessari": [1, 6], "unpack": 6, "until": 6, "unwelcom": 2, "up": [3, 7, 8, 10, 11], "updat": 6, "us": [1, 2, 7, 8, 9, 10, 11], "user": [1, 4, 10], "usr": 4, "v": 11, "valid": [1, 4, 6, 7, 8, 9, 11], "valu": [7, 8, 10, 11], "vari": 4, "variabl": [7, 8, 9, 10, 11], "variou": 10, "vc": 4, "vector": [4, 11], "venv": 4, "verbos": [7, 8, 9, 10, 11], "veri": 10, "verifi": 4, "version": [1, 2, 3, 4, 7, 8, 9, 10, 11], "via": [2, 3], "video": 3, "vieilled": [2, 10], "view": 6, "viewpoint": 2, "violat": 6, "virtual": 4, "visibl": 6, "visual": 11, "void": 6, "volum": 6, "voluntari": 4, "w": 6, "w_j": 10, "wa": 6, "wai": [3, 4, 6, 11], "waiv": 6, "waiver": 6, "want": [3, 6], "we": [2, 6, 7, 8, 9, 10, 11], "weight": [7, 8, 10, 11], "welcom": [2, 6], "well": [6, 10, 11], "were": 6, "what": [2, 6], "whatev": 6, "when": [1, 2, 6, 9, 10, 11], "where": 6, "whether": [6, 11], "which": [2, 3, 4, 6, 7, 8, 10, 11], "while": [4, 11], "who": [2, 3, 4, 6], "whole": 6, "whom": 6, "whose": [4, 6], "why": 6, "wide": 6, "wiki": 2, "win_siz": [7, 8, 9, 10, 11], "window": [4, 6, 7, 8, 9, 10, 11], "wipo": 6, "wish": 6, "within": [2, 4, 6, 7, 8, 10], "without": [1, 2, 6], "work": [6, 11], "workflow": 3, "world": 4, "worldwid": 6, "would": 6, "write": [3, 6], "written": [3, 6], "wrmse": [7, 8, 10, 11], "wrmse_hat": 11, "ws_hat": [7, 8, 11], "www": [2, 6], "x": [4, 7, 8, 10, 11], "xmax": 11, "xmin": 11, "ye": 4, "year": [6, 11], "ymax": 11, "ymin": 11, "you": [3, 4, 6], "your": 3, "yourself": 6, "yr": 10, "zero": 11, "zip": 4, "zoom": 11}, "titles": ["Articles", "Changelog", "Code of conduct", "Community guidelines", "riskmapjnr Python package", "Indices and tables", "License", "Get Started", "Kenya", "Parallel computing", "All steps", "Python API"], "titleterms": {"0": [1, 6], "1": [1, 6, 7, 8, 9, 10], "10": 6, "11": 6, "12": 6, "13": 6, "14": 6, "15": 6, "16": 6, "17": 6, "2": [1, 6, 7, 8, 9, 10], "3": [6, 7, 8, 9, 10], "4": [6, 7, 8, 9, 10], "5": [6, 10], "6": [6, 10], "7": [6, 10], "8": [6, 10], "9": [6, 10], "AND": 6, "No": 6, "Not": 6, "These": 6, "accept": 6, "addit": 6, "affero": 6, "all": 10, "an": 3, "anti": 6, "api": 11, "appli": 6, "articl": 0, "attribut": 2, "automat": 6, "basic": 6, "begin": 10, "categori": 10, "chang": [7, 8, 10], "changelog": 1, "circumvent": 6, "code": [2, 3, 6], "commun": 3, "comparison": [7, 8], "comput": 9, "conda": 4, "condit": 6, "conduct": 2, "content": 4, "contribut": [3, 4], "convei": 6, "copi": 6, "cover": [7, 8, 10], "data": [7, 8, 10], "definit": 6, "deforest": [7, 8, 10], "deriv": [7, 8, 10], "disclaim": 6, "distanc": [7, 8, 10], "downstream": 6, "edg": [7, 8, 10], "enforc": 2, "final": 10, "forest": [7, 8, 10], "form": 6, "freedom": 6, "from": 6, "function": [4, 11], "gener": 6, "get": 7, "gnu": 6, "guidelin": 3, "have": 6, "how": 6, "import": [7, 8, 10], "indic": 5, "instal": 4, "interpret": 6, "introduct": 10, "issu": 3, "kenya": 8, "law": 6, "legal": 6, "liabil": 6, "licens": 6, "limit": 6, "local": 10, "main": [4, 11], "map": [7, 8, 10], "miscellan": 11, "model": [7, 8], "modifi": 6, "modul": [7, 8, 10], "need": 4, "new": 6, "non": 6, "object": 10, "other": 6, "our": 2, "overview": 4, "packag": 4, "parallel": 9, "patent": 6, "per": 10, "perform": [7, 8], "period": 10, "permiss": 6, "pixel": 10, "pledg": 2, "plot": 11, "preambl": [6, 7, 8, 9], "program": 6, "protect": 6, "public": 6, "python": [4, 7, 8, 10, 11], "raster": 10, "rate": 10, "recipi": 6, "recommend": 4, "report": 3, "requir": 6, "respons": 2, "result": [7, 8, 9], "revis": 6, "right": 6, "risk": [7, 8, 10], "riskmapjnr": [1, 4], "scope": 2, "section": 6, "sequenti": 9, "sourc": 6, "standard": 2, "start": 7, "statement": 4, "step": 10, "surrend": 6, "tabl": [4, 5], "term": 6, "termin": 6, "test": 4, "thi": 6, "us": [4, 6], "user": 6, "valid": 10, "verbatim": 6, "version": 6, "virtualenv": 4, "warranti": 6, "your": 6, "zero": 10}}) \ No newline at end of file