From 0f7796da4c8de23cfbacf4a28aceccddf9a1add1 Mon Sep 17 00:00:00 2001 From: ghislainv Date: Tue, 9 Apr 2024 22:42:25 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20ghislain?= =?UTF-8?q?v/riskmapjnr@694a8217ece190ef236db73e767dcf313f8454cc=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .buildinfo | 2 +- _modules/index.html | 2 +- _modules/riskmapjnr/defor_cat.html | 2 +- _modules/riskmapjnr/defrate_per_cat.html | 2 +- _modules/riskmapjnr/dist_edge_threshold.html | 2 +- _modules/riskmapjnr/local_defor_rate.html | 2 +- _modules/riskmapjnr/makemap.html | 2 +- _modules/riskmapjnr/misc/miscellaneous.html | 6 +++--- _modules/riskmapjnr/plot.html | 2 +- _modules/riskmapjnr/riskmapjnr.html | 11 +++++------ _modules/riskmapjnr/set_defor_cat_zero.html | 4 +++- _modules/riskmapjnr/validation.html | 2 +- articles.html | 2 +- changelog.html | 2 +- code_of_conduct.html | 2 +- contributing.html | 2 +- genindex.html | 2 +- index.html | 2 +- indices.html | 2 +- license.html | 2 +- notebooks/get_started.html | 2 +- notebooks/kenya.html | 2 +- notebooks/parallel.html | 2 +- notebooks/steps.html | 2 +- py-modindex.html | 2 +- reference.html | 4 +++- search.html | 2 +- searchindex.js | 2 +- 28 files changed, 38 insertions(+), 35 deletions(-) diff --git a/.buildinfo b/.buildinfo index 7317111..4252baf 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 3f41b48232694922978300c09146fdaf +config: c640b7ea9ce96cebfdbf0c2e420a74b3 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/_modules/index.html b/_modules/index.html index 0bff36e..d796ea7 100644 --- a/_modules/index.html +++ b/_modules/index.html @@ -114,7 +114,7 @@

All modules for which code is available

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/defor_cat.html b/_modules/riskmapjnr/defor_cat.html index 09cdee0..091e849 100644 --- a/_modules/riskmapjnr/defor_cat.html +++ b/_modules/riskmapjnr/defor_cat.html @@ -308,7 +308,7 @@

Source code for riskmapjnr.defor_cat
- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/defrate_per_cat.html b/_modules/riskmapjnr/defrate_per_cat.html index 608a3c4..b1fac06 100644 --- a/_modules/riskmapjnr/defrate_per_cat.html +++ b/_modules/riskmapjnr/defrate_per_cat.html @@ -288,7 +288,7 @@

Source code for riskmapjnr.defrate_per_cat
- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/dist_edge_threshold.html b/_modules/riskmapjnr/dist_edge_threshold.html index 0a994ca..3dd015b 100644 --- a/_modules/riskmapjnr/dist_edge_threshold.html +++ b/_modules/riskmapjnr/dist_edge_threshold.html @@ -517,7 +517,7 @@

Source code for riskmapjnr.dist_edge_threshold

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/local_defor_rate.html b/_modules/riskmapjnr/local_defor_rate.html index ce462d0..9c82816 100644 --- a/_modules/riskmapjnr/local_defor_rate.html +++ b/_modules/riskmapjnr/local_defor_rate.html @@ -283,7 +283,7 @@

Source code for riskmapjnr.local_defor_rate
- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/makemap.html b/_modules/riskmapjnr/makemap.html index d6e699d..df25d11 100644 --- a/_modules/riskmapjnr/makemap.html +++ b/_modules/riskmapjnr/makemap.html @@ -744,7 +744,7 @@

Source code for riskmapjnr.makemap
- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/misc/miscellaneous.html b/_modules/riskmapjnr/misc/miscellaneous.html index 825665f..1baae08 100644 --- a/_modules/riskmapjnr/misc/miscellaneous.html +++ b/_modules/riskmapjnr/misc/miscellaneous.html @@ -249,8 +249,8 @@

Source code for riskmapjnr.misc.miscellaneous

nsquare_y = int(np.ceil(nrow / square_size)) nsquare = nsquare_x * nsquare_y # Upper-left coordinates of each square - x = np.arange(0, ncol, square_size, dtype=np.int).tolist() - y = np.arange(0, nrow, square_size, dtype=np.int).tolist() + x = np.arange(0, ncol, square_size, dtype=int).tolist() + y = np.arange(0, nrow, square_size, dtype=int).tolist() # Size (number of col and row) of each square nx = [square_size] * nsquare_x ny = [square_size] * nsquare_y @@ -383,7 +383,7 @@

Source code for riskmapjnr.misc.miscellaneous

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/plot.html b/_modules/riskmapjnr/plot.html index bd5add7..482c2cd 100644 --- a/_modules/riskmapjnr/plot.html +++ b/_modules/riskmapjnr/plot.html @@ -459,7 +459,7 @@

Source code for riskmapjnr.plot
- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/_modules/riskmapjnr/riskmapjnr.html b/_modules/riskmapjnr/riskmapjnr.html index 70b00a5..861a520 100644 --- a/_modules/riskmapjnr/riskmapjnr.html +++ b/_modules/riskmapjnr/riskmapjnr.html @@ -108,7 +108,7 @@

Source code for riskmapjnr.riskmapjnr

 # license         :GPLv3
 # ==============================================================================
 
-__version__ = "1.2"
+import riskmapjnr as rmj
 
 
 

@@ -121,10 +121,9 @@ 
Source code for riskmapjnr.riskmapjnr
     ``riskmapjnr`` Python package has been correctly imported.
 
     """
-    print("# riskmapjnr: Map of deforestation risk following JNR methodology.")
-    print("# https://ecology.ghislainv.fr/riskmapjnr")
-    print("# riskmapjnr version {}.".format(__version__))
-    return None

+
+    print(rmj.__doc__)
+    print(f"version {rmj.__version__}.")

 
 
 # End
@@ -137,7 +136,7 @@ 
Source code for riskmapjnr.riskmapjnr
     

   

     

-      ©2022, Ghislain Vieilledent.
+      ©2024, Ghislain Vieilledent.
       
       |
       Powered by Sphinx 7.2.6
diff --git a/_modules/riskmapjnr/set_defor_cat_zero.html b/_modules/riskmapjnr/set_defor_cat_zero.html
index 6552188..945490c 100644
--- a/_modules/riskmapjnr/set_defor_cat_zero.html
+++ b/_modules/riskmapjnr/set_defor_cat_zero.html
@@ -208,6 +208,8 @@ 
Source code for riskmapjnr.set_defor_cat_zero
# Data
         catzero_data = ldefrate_band.ReadAsArray(x[px], y[py], nx[px], ny[py])
         dist_data = dist_band.ReadAsArray(x[px], y[py], nx[px], ny[py])
+        # Ensure NoData when dist_data equals zero (especially for t2)
+        catzero_data[dist_data == 0] = 0
         # Set 1 for zero risk of deforestation (beyond distance threshold)
         catzero_data[dist_data >= dist_thresh] = 1
         catzero_band.WriteArray(catzero_data, x[px], y[py])
@@ -251,7 +253,7 @@ 
Source code for riskmapjnr.set_defor_cat_zero

   

     

-      ©2022, Ghislain Vieilledent.
+      ©2024, Ghislain Vieilledent.
       
       |
       Powered by Sphinx 7.2.6
diff --git a/_modules/riskmapjnr/validation.html b/_modules/riskmapjnr/validation.html
index 8c77acc..db772a7 100644
--- a/_modules/riskmapjnr/validation.html
+++ b/_modules/riskmapjnr/validation.html
@@ -356,7 +356,7 @@ 
Source code for riskmapjnr.validation
     

   

     

-      ©2022, Ghislain Vieilledent.
+      ©2024, Ghislain Vieilledent.
       
       |
       Powered by Sphinx 7.2.6
diff --git a/articles.html b/articles.html
index 7cb314e..f95de39 100644
--- a/articles.html
+++ b/articles.html
@@ -125,7 +125,7 @@ 
Articles
     

   

     

-      ©2022, Ghislain Vieilledent.
+      ©2024, Ghislain Vieilledent.
       
       |
       Powered by Sphinx 7.2.6
diff --git a/changelog.html b/changelog.html
index 0581385..399a514 100644
--- a/changelog.html
+++ b/changelog.html
@@ -159,7 +159,7 @@ 
riskmapjnr 0.1

   

     

-      ©2022, Ghislain Vieilledent.
+      ©2024, Ghislain Vieilledent.
       
       |
       Powered by Sphinx 7.2.6
diff --git a/code_of_conduct.html b/code_of_conduct.html
index f5a5126..5375a80 100644
--- a/code_of_conduct.html
+++ b/code_of_conduct.html
@@ -185,7 +185,7 @@ 
Attribution

   

     

-      ©2022, Ghislain Vieilledent.
+      ©2024, Ghislain Vieilledent.
       
       |
       Powered by Sphinx 7.2.6
diff --git a/contributing.html b/contributing.html
index 98913c3..260e954 100644
--- a/contributing.html
+++ b/contributing.html
@@ -139,7 +139,7 @@ 
Contribute to code
- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/genindex.html b/genindex.html index a2790a9..bf8f823 100644 --- a/genindex.html +++ b/genindex.html @@ -243,7 +243,7 @@

V

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/index.html b/index.html index 3d77fb7..b34ccb7 100644 --- a/index.html +++ b/index.html @@ -312,7 +312,7 @@

Indices and tables

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/indices.html b/indices.html index 5e47c17..d808d58 100644 --- a/indices.html +++ b/indices.html @@ -116,7 +116,7 @@

Indices and tables

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/license.html b/license.html index dadb13b..679f59a 100644 --- a/license.html +++ b/license.html @@ -660,7 +660,7 @@

How to Apply These Terms to Your New Programs

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/notebooks/get_started.html b/notebooks/get_started.html index 88ff6a7..fb546f6 100644 --- a/notebooks/get_started.html +++ b/notebooks/get_started.html @@ -415,7 +415,7 @@

3.4 Risk map of defo

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/notebooks/kenya.html b/notebooks/kenya.html index f81fba8..28d6c69 100644 --- a/notebooks/kenya.html +++ b/notebooks/kenya.html @@ -519,7 +519,7 @@

3.4 Risk map of defo

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/notebooks/parallel.html b/notebooks/parallel.html index cd763e2..3b83574 100644 --- a/notebooks/parallel.html +++ b/notebooks/parallel.html @@ -274,7 +274,7 @@

4 Results

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/notebooks/steps.html b/notebooks/steps.html index 7bcf3b9..e19f56c 100644 --- a/notebooks/steps.html +++ b/notebooks/steps.html @@ -632,7 +632,7 @@

9 Final risk map

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/py-modindex.html b/py-modindex.html index 0fec1e7..3e89942 100644 --- a/py-modindex.html +++ b/py-modindex.html @@ -139,7 +139,7 @@

Python Module Index

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/reference.html b/reference.html index c812101..53fd1fc 100644 --- a/reference.html +++ b/reference.html @@ -108,6 +108,8 @@

Quick search

Python API

Main functions

+

riskmapjnr: mapping deforestation risk using the moving window approach. +https://ecology.ghislainv.fr/riskmapknr/

defor_cat(ldefrate_with_zero_file, riskmap_file='riskmap.tif', ncat=30, method='Equal Area', blk_rows=128, verbose=True)[source]
@@ -722,7 +724,7 @@

Python API

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/search.html b/search.html index 5ec724e..1379bb0 100644 --- a/search.html +++ b/search.html @@ -128,7 +128,7 @@

Search

- ©2022, Ghislain Vieilledent. + ©2024, Ghislain Vieilledent. | Powered by Sphinx 7.2.6 diff --git a/searchindex.js b/searchindex.js index a49395d..cb8f9a4 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["articles", "changelog", "code_of_conduct", "contributing", "index", "indices", "license", "notebooks/get_started", "notebooks/kenya", "notebooks/parallel", "notebooks/steps", "reference"], "filenames": ["articles.rst", "changelog.rst", "code_of_conduct.rst", "contributing.rst", "index.rst", "indices.rst", "license.rst", "notebooks/get_started.rst", "notebooks/kenya.rst", "notebooks/parallel.rst", "notebooks/steps.rst", "reference.rst"], "titles": ["Articles", "Changelog", "Code of conduct", "Community guidelines", "riskmapjnr Python package", "Indices and tables", "License", "Get Started", "Kenya", "Parallel computing", "All steps", "Python API"], "terms": {"get": [0, 4, 6, 10], "start": [0, 1, 3, 4, 6, 10, 11], "all": [0, 2, 4, 6, 7, 8, 11], "step": [0, 1, 3, 4, 6, 7, 8, 9, 11], "parallel": [0, 1, 4, 7, 8, 11], "comput": [0, 1, 4, 6, 7, 8, 10, 11], "kenya": [0, 4], "improv": [1, 3, 10, 11], "document": [1, 3, 6], "bug": [1, 3], "correct": [1, 2, 4, 6, 10, 11], "make": [1, 2, 3, 6, 11], "sure": [1, 6], "fcc_file": [1, 7, 8, 9, 10, 11], "i": [1, 2, 3, 4, 6, 7, 8, 9, 10, 11], "project": [1, 2, 3, 4, 11], "distanc": [1, 4, 11], "let": 1, "user": [1, 4, 10], "set": [1, 2, 7, 8, 9, 10, 11], "agg": 1, "backend": 1, "matplotlib": [1, 4, 10, 11], "when": [1, 2, 6, 9, 10, 11], "displai": [1, 6], "found": [1, 6], "close": [1, 6, 10], "join": [1, 7, 8, 10], "pool": 1, "execut": [1, 4, 6], "makemap": [1, 7, 8, 9, 11], "thi": [1, 2, 3, 4, 7, 8, 10, 11], "version": [1, 2, 3, 4, 7, 8, 9, 10, 11], "run": [1, 4, 6, 7, 8, 9, 10, 11], "without": [1, 2, 6], "issu": [1, 2], "sepal": 1, "remov": [1, 2, 4, 6], "unnecessari": [1, 6], "output": [1, 6, 11], "file": [1, 4, 6, 7, 8, 10, 11], "first": [1, 4, 6, 7, 8, 10, 11], "stabl": 1, "releas": [1, 3, 4, 6], "benchmark": [1, 4], "estim": [1, 4, 10, 11], "advantag": 1, "new": [1, 3, 4, 11], "tutori": [1, 3, 4, 10], "larg": [1, 4], "jurisdict": [1, 4, 10], "countri": [1, 4, 6], "annual": 1, "deforest": [1, 4, 11], "rate": [1, 4, 11], "formula": [1, 10], "valid": [1, 4, 6, 7, 8, 9, 11], "us": [1, 2, 7, 8, 9, 10, 11], "map": [1, 4, 9, 11], "period": [1, 4, 7, 8, 9, 11], "final": [1, 6], "risk": [1, 4, 6, 9, 11], "end": [1, 6, 11], "alpha": [1, 10], "packag": [1, 3, 6, 7, 8, 10, 11], "must": [1, 3, 4, 6, 10, 11], "thoroughli": 1, "test": [1, 3, 10], "In": [2, 4, 6, 10], "interest": [2, 3, 4, 6], "foster": 2, "an": [2, 4, 6, 10, 11], "open": [2, 3, 4], "welcom": [2, 6], "environ": [2, 4, 7, 8, 9, 10], "we": [2, 6, 7, 8, 9, 10, 11], "contributor": [2, 3, 4, 6], "maintain": [2, 6], "particip": 2, "commun": [2, 4, 6], "harass": 2, "free": [2, 3, 6], "experi": 2, "everyon": [2, 6], "regardless": [2, 6], "ag": 2, "bodi": [2, 6], "size": [2, 4, 7, 8, 9, 10, 11], "disabl": 2, "ethnic": 2, 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"sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.viewcode": 1, "sphinx": 60}, "alltitles": {"Articles": [[0, "articles"]], "Changelog": [[1, "changelog"]], "riskmapjnr 1.2": [[1, "riskmapjnr-1-2"]], "riskmapjnr 1.1": [[1, "riskmapjnr-1-1"]], "riskmapjnr 1.0": [[1, "riskmapjnr-1-0"]], "riskmapjnr 0.1": [[1, "riskmapjnr-0-1"]], "Code of conduct": [[2, "code-of-conduct"]], "Our Pledge": [[2, "our-pledge"]], "Our Standards": [[2, "our-standards"]], "Our Responsibilities": [[2, "our-responsibilities"]], "Scope": [[2, "scope"]], "Enforcement": [[2, "enforcement"]], "Attribution": [[2, "attribution"]], "Community guidelines": [[3, "community-guidelines"]], "Report an issue": [[3, "report-an-issue"]], "Contribute to code": [[3, "contribute-to-code"]], "riskmapjnr Python package": [[4, "riskmapjnr-python-package"]], "Overview": [[4, "overview"]], "Statement of Need": [[4, "statement-of-need"]], "Installation": [[4, "installation"]], "Using conda (recommended)": [[4, "using-conda-recommended"]], "Using virtualenv": [[4, "using-virtualenv"]], "Installation testing": [[4, "installation-testing"]], "Main functionalities": [[4, "main-functionalities"]], "Contributing": [[4, "contributing"]], "Table of contents": [[4, "table-of-contents"]], "Indices and tables": [[4, "indices-and-tables"], [5, "indices-and-tables"]], "License": [[6, "license"]], "GNU General Public License": [[6, "gnu-general-public-license"]], "Preamble": [[6, "preamble"]], "TERMS AND CONDITIONS": [[6, "terms-and-conditions"]], "0. Definitions": [[6, "definitions"]], "1. Source Code": [[6, "source-code"]], "2. Basic Permissions": [[6, "basic-permissions"]], "3. Protecting Users\u2019 Legal Rights From Anti-Circumvention Law": [[6, "protecting-users-legal-rights-from-anti-circumvention-law"]], "4. Conveying Verbatim Copies": [[6, "conveying-verbatim-copies"]], "5. Conveying Modified Source Versions": [[6, "conveying-modified-source-versions"]], "6. Conveying Non-Source Forms": [[6, "conveying-non-source-forms"]], "7. Additional Terms": [[6, "additional-terms"]], "8. Termination": [[6, "termination"]], "9. Acceptance Not Required for Having Copies": [[6, "acceptance-not-required-for-having-copies"]], "10. Automatic Licensing of Downstream Recipients": [[6, "automatic-licensing-of-downstream-recipients"]], "11. Patents": [[6, "patents"]], "12. No Surrender of Others\u2019 Freedom": [[6, "no-surrender-of-others-freedom"]], "13. Use with the GNU Affero General Public License": [[6, "use-with-the-gnu-affero-general-public-license"]], "14. Revised Versions of this License": [[6, "revised-versions-of-this-license"]], "15. Disclaimer of Warranty": [[6, "disclaimer-of-warranty"]], "16. Limitation of Liability": [[6, "limitation-of-liability"]], "17. Interpretation of Sections 15 and 16": [[6, "interpretation-of-sections-15-and-16"]], "How to Apply These Terms to Your New Programs": [[6, "how-to-apply-these-terms-to-your-new-programs"]], "Get Started": [[7, "get-started"]], "1 Preamble": [[7, "preamble"], [8, "preamble"], [9, "preamble"]], "1.1 Importing Python modules": [[7, "importing-python-modules"], [8, "importing-python-modules"]], "1.2 Forest cover change data": [[7, "forest-cover-change-data"], [8, "forest-cover-change-data"]], "2 Derive the deforestation risk map": [[7, "derive-the-deforestation-risk-map"]], "3 Results": [[7, "results"], [8, "results"]], "3.1 Deforestation risk and distance to forest edge": [[7, "deforestation-risk-and-distance-to-forest-edge"], [8, "deforestation-risk-and-distance-to-forest-edge"]], "3.2 Model comparison": [[7, "model-comparison"], [8, "model-comparison"]], "3.3 Model performance": [[7, "model-performance"], [8, "model-performance"]], "3.4 Risk map of deforestation": [[7, "risk-map-of-deforestation"], [8, "risk-map-of-deforestation"]], "Kenya": [[8, "kenya"]], "2 Deriving the deforestation risk map": [[8, "deriving-the-deforestation-risk-map"]], "Parallel computing": [[9, "parallel-computing"]], "2 Sequential computing": [[9, "sequential-computing"]], "3 Parallel computing": [[9, "id1"]], "4 Results": [[9, "results"]], "All steps": [[10, "all-steps"]], "1 Introduction": [[10, "introduction"]], "1.1 Objective": [[10, "objective"]], "1.2 Importing Python modules": [[10, "importing-python-modules"]], "1.3 Forest cover change data": [[10, "forest-cover-change-data"]], "2 Deforestation risk and distance to forest edge": [[10, "deforestation-risk-and-distance-to-forest-edge"]], "3 Local deforestation rate": [[10, "local-deforestation-rate"]], "4 Pixels with zero risk of deforestation": [[10, "pixels-with-zero-risk-of-deforestation"]], "5 Categories of deforestation risk": [[10, "categories-of-deforestation-risk"]], "6 Deforestation rates per category of risk": [[10, "deforestation-rates-per-category-of-risk"]], "7 Derive a risk map at the beginning of the validation period": [[10, "derive-a-risk-map-at-the-beginning-of-the-validation-period"]], "7.1 Distance to forest edge at the beginning of the validation period": [[10, "distance-to-forest-edge-at-the-beginning-of-the-validation-period"]], "7.2 Raster of local deforestation rate at the beginning of the validation period": [[10, "raster-of-local-deforestation-rate-at-the-beginning-of-the-validation-period"]], "7.3 Risk map at the beginning of the validation period": [[10, "risk-map-at-the-beginning-of-the-validation-period"]], "8 Validation": [[10, "validation"]], "9 Final risk map": [[10, "final-risk-map"]], "Python API": [[11, "python-api"]], "Main functions": [[11, "module-riskmapjnr"]], "Plot functions": [[11, "module-riskmapjnr.plot"]], "Miscellaneous functions": [[11, "module-riskmapjnr.misc.miscellaneous"]]}, "indexentries": {"defor_cat() (in module riskmapjnr)": [[11, 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"Contribute to code": [[3, "contribute-to-code"]], "riskmapjnr Python package": [[4, "riskmapjnr-python-package"]], "Overview": [[4, "overview"]], "Statement of Need": [[4, "statement-of-need"]], "Installation": [[4, "installation"]], "Using conda (recommended)": [[4, "using-conda-recommended"]], "Using virtualenv": [[4, "using-virtualenv"]], "Installation testing": [[4, "installation-testing"]], "Main functionalities": [[4, "main-functionalities"]], "Contributing": [[4, "contributing"]], "Table of contents": [[4, "table-of-contents"]], "Indices and tables": [[4, "indices-and-tables"], [5, "indices-and-tables"]], "License": [[6, "license"]], "GNU General Public License": [[6, "gnu-general-public-license"]], "Preamble": [[6, "preamble"]], "TERMS AND CONDITIONS": [[6, "terms-and-conditions"]], "0. Definitions": [[6, "definitions"]], "1. Source Code": [[6, "source-code"]], "2. Basic Permissions": [[6, "basic-permissions"]], "3. Protecting Users\u2019 Legal Rights From Anti-Circumvention Law": [[6, "protecting-users-legal-rights-from-anti-circumvention-law"]], "4. Conveying Verbatim Copies": [[6, "conveying-verbatim-copies"]], "5. Conveying Modified Source Versions": [[6, "conveying-modified-source-versions"]], "6. Conveying Non-Source Forms": [[6, "conveying-non-source-forms"]], "7. Additional Terms": [[6, "additional-terms"]], "8. Termination": [[6, "termination"]], "9. Acceptance Not Required for Having Copies": [[6, "acceptance-not-required-for-having-copies"]], "10. Automatic Licensing of Downstream Recipients": [[6, "automatic-licensing-of-downstream-recipients"]], "11. Patents": [[6, "patents"]], "12. No Surrender of Others\u2019 Freedom": [[6, "no-surrender-of-others-freedom"]], "13. Use with the GNU Affero General Public License": [[6, "use-with-the-gnu-affero-general-public-license"]], "14. Revised Versions of this License": [[6, "revised-versions-of-this-license"]], "15. Disclaimer of Warranty": [[6, "disclaimer-of-warranty"]], "16. Limitation of Liability": [[6, "limitation-of-liability"]], "17. Interpretation of Sections 15 and 16": [[6, "interpretation-of-sections-15-and-16"]], "How to Apply These Terms to Your New Programs": [[6, "how-to-apply-these-terms-to-your-new-programs"]], "Get Started": [[7, "get-started"]], "1 Preamble": [[7, "preamble"], [8, "preamble"], [9, "preamble"]], "1.1 Importing Python modules": [[7, "importing-python-modules"], [8, "importing-python-modules"]], "1.2 Forest cover change data": [[7, "forest-cover-change-data"], [8, "forest-cover-change-data"]], "2 Derive the deforestation risk map": [[7, "derive-the-deforestation-risk-map"]], "3 Results": [[7, "results"], [8, "results"]], "3.1 Deforestation risk and distance to forest edge": [[7, "deforestation-risk-and-distance-to-forest-edge"], [8, "deforestation-risk-and-distance-to-forest-edge"]], "3.2 Model comparison": [[7, "model-comparison"], [8, "model-comparison"]], "3.3 Model performance": [[7, "model-performance"], [8, "model-performance"]], "3.4 Risk map of deforestation": [[7, "risk-map-of-deforestation"], [8, "risk-map-of-deforestation"]], "Kenya": [[8, "kenya"]], "2 Deriving the deforestation risk map": [[8, "deriving-the-deforestation-risk-map"]], "Parallel computing": [[9, "parallel-computing"]], "2 Sequential computing": [[9, "sequential-computing"]], "3 Parallel computing": [[9, "id1"]], "4 Results": [[9, "results"]], "All steps": [[10, "all-steps"]], "1 Introduction": [[10, "introduction"]], "1.1 Objective": [[10, "objective"]], "1.2 Importing Python modules": [[10, "importing-python-modules"]], "1.3 Forest cover change data": [[10, "forest-cover-change-data"]], "2 Deforestation risk and distance to forest edge": [[10, "deforestation-risk-and-distance-to-forest-edge"]], "3 Local deforestation rate": [[10, "local-deforestation-rate"]], "4 Pixels with zero risk of deforestation": [[10, "pixels-with-zero-risk-of-deforestation"]], "5 Categories of deforestation risk": [[10, "categories-of-deforestation-risk"]], "6 Deforestation rates per category of risk": [[10, "deforestation-rates-per-category-of-risk"]], "7 Derive a risk map at the beginning of the validation period": [[10, "derive-a-risk-map-at-the-beginning-of-the-validation-period"]], "7.1 Distance to forest edge at the beginning of the validation period": [[10, "distance-to-forest-edge-at-the-beginning-of-the-validation-period"]], "7.2 Raster of local deforestation rate at the beginning of the validation period": [[10, "raster-of-local-deforestation-rate-at-the-beginning-of-the-validation-period"]], "7.3 Risk map at the beginning of the validation period": [[10, "risk-map-at-the-beginning-of-the-validation-period"]], "8 Validation": [[10, "validation"]], "9 Final risk map": [[10, "final-risk-map"]], "Python API": [[11, "python-api"]], "Main functions": [[11, "module-riskmapjnr"]], "Plot functions": [[11, "module-riskmapjnr.plot"]], "Miscellaneous functions": [[11, "module-riskmapjnr.misc.miscellaneous"]]}, "indexentries": {"defor_cat() (in module riskmapjnr)": [[11, "riskmapjnr.defor_cat"]], "defrate_per_cat() (in module riskmapjnr)": [[11, "riskmapjnr.defrate_per_cat"]], "dist_edge_threshold() (in module riskmapjnr)": [[11, "riskmapjnr.dist_edge_threshold"]], "fcc123() (in module riskmapjnr.plot)": [[11, "riskmapjnr.plot.fcc123"]], "invlogit() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.invlogit"]], "local_defor_rate() (in module riskmapjnr)": [[11, "riskmapjnr.local_defor_rate"]], "main() (in module riskmapjnr.riskmapjnr)": [[11, "riskmapjnr.riskmapjnr.main"]], "make_dir() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.make_dir"]], "makemap() (in module riskmapjnr)": [[11, "riskmapjnr.makemap"]], "module": [[11, "module-riskmapjnr"], [11, "module-riskmapjnr.misc.miscellaneous"], [11, "module-riskmapjnr.plot"], [11, "module-riskmapjnr.riskmapjnr"]], "riskmap() (in module riskmapjnr.plot)": [[11, "riskmapjnr.plot.riskmap"]], "riskmapjnr": [[11, "module-riskmapjnr"]], "riskmapjnr.misc.miscellaneous": [[11, "module-riskmapjnr.misc.miscellaneous"]], "riskmapjnr.plot": [[11, "module-riskmapjnr.plot"]], "riskmapjnr.riskmapjnr": [[11, "module-riskmapjnr.riskmapjnr"]], "set_defor_cat_zero() (in module riskmapjnr)": [[11, "riskmapjnr.set_defor_cat_zero"]], "tree() (in module riskmapjnr.misc.miscellaneous)": [[11, "riskmapjnr.misc.miscellaneous.tree"]], "validation() (in module riskmapjnr)": [[11, "riskmapjnr.validation"]]}}) \ No newline at end of file