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grd_trd.o74885
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'ionchannels_membraneproteins_balanced_train_6_frozen_representations_ProtBERT-BFD.h5', 'ionchannels_membraneproteins_balanced_train_1_frozen_representations_ProtBERT.h5', 'iontransporters_membraneproteins_balanced_train_1_frozen_representations_ESM-2.h5', 'iontransporters_membraneproteins_balanced_train_6_frozen_representations_ProtT5.h5', 'iontransporters_membraneproteins_balanced_train_2_frozen_representations_ProtT5.h5', 'iontransporters_membraneproteins_balanced_train_8_frozen_representations_ProtBERT.h5', 'ionchannels_membraneproteins_balanced_train_1_frozen_representations_ESM-2.h5', 'iontransporters_membraneproteins_balanced_train_7_frozen_representations_ProtBERT-BFD.h5', 'ionchannels_membraneproteins_balanced_train_9_frozen_representations_ESM-2_15B.h5', 'iontransporters_membraneproteins_balanced_train_1_finetuned_representations_ProtBERT-BFD_iontransporters_membraneproteins_balanced.h5', 'ionchannels_membraneproteins_balanced_train_9_frozen_representations_ESM-2.h5', 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'iontransporters_membraneproteins_balanced_train_7_frozen_representations_ESM-1b.h5', 'iontransporters_membraneproteins_balanced_train_5_finetuned_representations_ProtBERT_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_7_finetuned_representations_ProtBERT_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_10_finetuned_representations_ProtBERT_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_8_frozen_representations_ESM-2.h5', 'ionchannels_membraneproteins_balanced_train_7_frozen_representations_ESM-2_15B.h5', 'iontransporters_membraneproteins_balanced_train_8_frozen_representations_ESM-2_15B.h5', 'ionchannels_membraneproteins_balanced_train_9_frozen_representations_ESM-1b.h5', 'iontransporters_membraneproteins_balanced_train_5_finetuned_representations_ProtBERT-BFD_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_8_frozen_representations_ProtT5.h5', 'ionchannels_membraneproteins_imbalanced_train_finetuned_representations_ProtBERT-BFD_ionchannels_membraneproteins_imbalanced.h5', 'iontransporters_membraneproteins_balanced_train_2_frozen_representations_ESM-2.h5', 'iontransporters_membraneproteins_balanced_train_8_finetuned_representations_ProtBERT-BFD_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_9_frozen_representations_ProtT5.h5', 'iontransporters_membraneproteins_balanced_train_1_finetuned_representations_ProtBERT_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_4_finetuned_representations_ESM-1b_iontransporters_membraneproteins_balanced.h5', 'ionchannels_membraneproteins_balanced_train_8_frozen_representations_ProtT5.h5', 'ionchannels_membraneproteins_balanced_train_2_frozen_representations_ProtBERT-BFD.h5', 'ionchannels_membraneproteins_balanced_train_6_frozen_representations_ESM-2_15B.h5', 'iontransporters_membraneproteins_balanced_train_8_finetuned_representations_ESM-2_iontransporters_membraneproteins_balanced.h5', 'ionchannels_membraneproteins_balanced_train_4_finetuned_representations_ProtBERT-BFD_ionchannels_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_10_frozen_representations_ESM-2.h5', 'iontransporters_membraneproteins_balanced_train_9_frozen_representations_ProtBERT-BFD.h5', 'iontransporters_membraneproteins_balanced_train_5_frozen_representations_ProtBERT-BFD.h5', 'iontransporters_membraneproteins_balanced_train_4_frozen_representations_ESM-1b.h5', 'iontransporters_membraneproteins_balanced_train_2_frozen_representations_ESM-2_15B.h5', 'ionchannels_membraneproteins_balanced_train_3_finetuned_representations_ProtBERT-BFD_ionchannels_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_9_finetuned_representations_ESM-1b_iontransporters_membraneproteins_balanced.h5', 'ionchannels_membraneproteins_balanced_train_2_frozen_representations_ESM-2_15B.h5', 'ionchannels_membraneproteins_balanced_train_1_finetuned_representations_ProtBERT_ionchannels_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_5_finetuned_representations_ESM-1b_iontransporters_membraneproteins_balanced.h5', 'ionchannels_membraneproteins_balanced_train_5_frozen_representations_ProtT5.h5', 'ionchannels_membraneproteins_balanced_train_8_finetuned_representations_ProtBERT-BFD_ionchannels_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_9_frozen_representations_ESM-1b.h5', 'ionchannels_membraneproteins_imbalanced_train_frozen_representations_ProtBERT-BFD.h5', 'iontransporters_membraneproteins_balanced_train_8_finetuned_representations_ESM-1b_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_2_finetuned_representations_ESM-2_iontransporters_membraneproteins_balanced.h5', 'iontransporters_membraneproteins_balanced_train_10_frozen_representations_ProtT5.h5', 'ionchannels_membraneproteins_balanced_train_7_frozen_representations_ProtT5.h5', 'ionchannels_membraneproteins_balanced_train_7_finetuned_representations_ESM-2_ionchannels_membraneproteins_balanced.h5', 'ionchannels_membraneproteins_balanced_train_10_frozen_representations_ProtBERT.h5', 'iontransporters_membraneproteins_balanced_train_10_frozen_representations_ESM-1b.h5']
--------------------------------------------------
--------------------------------------------------
Dataset name: ionchannels_membraneproteins
Dataset type: balanced
Dataset number: 10
Representation type: finetuned
Representer model: ESM
Performing grid search for model: svm
Performing grid search for model: rf
Performing grid search for model: knn
Performing grid search for model: lr
--------------------------------------------------
--------------------------------------------------
Dataset name: ionchannels_iontransporters
Dataset type: N/A
Dataset number: N/A
Representation type: finetuned
Representer model: ProtB
Performing grid search for model: svm
Performing grid search for model: rf
Performing grid search for model: knn
Performing grid search for model: lr
--------------------------------------------------
--------------------------------------------------
Dataset name: ionchannels_membraneproteins
Dataset type: balanced
Dataset number: 8
Representation type: frozen
Representer model: ProtBERT
Performing grid search for model: svm
Performing grid search for model: rf
Performing grid search for model: knn
Performing grid search for model: lr
--------------------------------------------------
--------------------------------------------------
Dataset name: ionchannels_membraneproteins
Dataset type: balanced
Dataset number: 3
Representation type: finetuned
Representer model: ESM
Performing grid search for model: svm
Performing grid search for model: rf
Performing grid search for model: knn
Performing grid search for model: lr
--------------------------------------------------
--------------------------------------------------
Dataset name: iontransporters_membraneproteins
Dataset type: balanced
Dataset number: 6
Representation type: frozen
Representer model: ESM-1b
Performing grid search for model: svm
joblib.externals.loky.process_executor._RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/externals/loky/process_executor.py", line 428, in _process_worker
r = call_item()
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/externals/loky/process_executor.py", line 275, in __call__
return self.fn(*self.args, **self.kwargs)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/_parallel_backends.py", line 620, in __call__
return self.func(*args, **kwargs)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/parallel.py", line 289, in __call__
for func, args, kwargs in self.items]
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/parallel.py", line 289, in <listcomp>
for func, args, kwargs in self.items]
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/utils/fixes.py", line 216, in __call__
return self.function(*args, **kwargs)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/model_selection/_validation.py", line 680, in _fit_and_score
estimator.fit(X_train, y_train, **fit_params)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/svm/_base.py", line 199, in fit
y = self._validate_targets(y)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/svm/_base.py", line 722, in _validate_targets
% len(cls)
ValueError: The number of classes has to be greater than one; got 1 class
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "train_traditional_classifiers.py", line 186, in <module>
grid_search.fit(x_train, y_train)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/model_selection/_search.py", line 891, in fit
self._run_search(evaluate_candidates)
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/model_selection/_search.py", line 1392, in _run_search
evaluate_candidates(ParameterGrid(self.param_grid))
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/sklearn/model_selection/_search.py", line 851, in evaluate_candidates
enumerate(candidate_params), enumerate(cv.split(X, y, groups))
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/parallel.py", line 1098, in __call__
self.retrieve()
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/parallel.py", line 975, in retrieve
self._output.extend(job.get(timeout=self.timeout))
File "/home/h_ghazik/python_path_gpu/lib/python3.7/site-packages/joblib/_parallel_backends.py", line 567, in wrap_future_result
return future.result(timeout=timeout)
File "/usr/local/pkg/python-3.7.3/root/lib/python3.7/concurrent/futures/_base.py", line 432, in result
return self.__get_result()
File "/usr/local/pkg/python-3.7.3/root/lib/python3.7/concurrent/futures/_base.py", line 384, in __get_result
raise self._exception
ValueError: The number of classes has to be greater than one; got 1 class