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sequences.qmd
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sequences.qmd
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---
title: " "
format:
html:
df-print: kable
code-fold: show
code-summary: "Hide code"
code-overflow: wrap
toc-title: Page Contents
toc: true
toc-depth: 2
toc-location: right
number-sections: false
html-math-method: katex
smooth-scroll: true
editor: source
editor_options:
chunk_output_type: console
---
```{=html}
<style type="text/css">
body, td {
font-size: 13pt;
}
code.r{
font-size: 9pt;
}
pre {
font-size: 11pt
}
</style>
```
::: {.callout-note icon=true}
#### VSV Sequences
Sequence data has been submitted to [GenBank](https://www.ncbi.nlm.nih.gov/genbank/) but may not yet been released due to a pending data report publication still in review. Code below will provide an accession numbers table. This page will be updated when genomic data becomes publicly available.
:::
#### Download *sequence accession numbers*
{{< downloadthis assets/genome_sequences.csv dname=genome_sequences label="Get Table" icon=download type=info class=data-button >}} **Sequence accession numbers** (*22 kb, csv*)
```{r message=FALSE, warning=FALSE, echo=FALSE}
#Load needed R-packages to execute code
library(tidyverse)
library(here)
```
### Read Data
Read sequence accession numbers from archived file on [Open Science Framework](https://osf.io/ghzfq/). Also available as supplemental data with publication.
```{r message=FALSE, warning=FALSE}
seq_accessions <- read_csv("https://osf.io/download/zytwj/")
```
```{r}
seq_accessions
```