BEAT installation

[falkamelung]

According to Hannes Bahtke BEAT works with python3.8/3.9. I installed using

conda create -n beat39 python=3.9 pypy
conda install libgfortran openblas theano pygpu openmpi pandas numpy openmpi --yes
conda install gcc gcc_linux-64 gfortran cxx-compiler cmake pkg-config xsimd openblas mpi4py --yes
pip install beat

but then I get a runtime error (I did do the theano fix):

beat init --help

You can find the C code in this temporary file: /tmp/theano_compilation_error_0sze2_xz
library inux-gnu/13.1.0/../../../../x86_64-conda-linux-gnu/bin/ld: is not found.
library pypy3-c: is not found.
Traceback (most recent call last):
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/gof/lazylinker_c.py", line 76, in <module>
    raise ImportError(
ImportError: Version check of the existing lazylinker compiled file. Looking for version 0.211, but found None. Extra debug information: force_compile=False, _need_reload=True

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/gof/lazylinker_c.py", line 99, in <module>
    raise ImportError(
ImportError: Version check of the existing lazylinker compiled file. Looking for version 0.211, but found None. Extra debug information: force_compile=False, _need_reload=True

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/bin/beat", line 5, in <module>
    from beat.apps.beat import main
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/beat/apps/beat.py", line 29, in <module>
    from beat import config as bconfig
  File "<frozen importlib._bootstrap>", line 1058, in _handle_fromlist
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/beat/config.py", line 32, in <module>
    from theano import config as tconfig
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/__init__.py", line 110, in <module>
    from theano.compile import (
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/compile/__init__.py", line 12, in <module>
    from theano.compile.mode import *
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/compile/mode.py", line 11, in <module>
    import theano.gof.vm
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/gof/vm.py", line 674, in <module>
    from . import lazylinker_c
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/gof/lazylinker_c.py", line 139, in <module>
    cmodule.GCC_compiler.compile_str(dirname, code, location=loc,
  File "/work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/lib/pypy3.9/site-packages/theano/gof/cmodule.py", line 2412, in compile_str
    raise Exception('Compilation failed (return status=%s): %s' %
Exception: Compilation failed (return status=1): /work2/05861/tg851601/stampede2/code/rsmas_insar/tools/miniconda3/envs/beat39/bin/../lib/gcc/x86_64-conda-linux-gnu/13.1.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -lpypy3-c: No such file or directory. collect2: error: ld returned 1 exit status.