diff --git a/.github/workflows/flake8.yml b/.github/workflows/flake8.yml index 1bf5a19..6999f5d 100644 --- a/.github/workflows/flake8.yml +++ b/.github/workflows/flake8.yml @@ -20,7 +20,7 @@ jobs: - name: flake8 Lint uses: TrueBrain/actions-flake8@v2 with: - ignore: E203,E701 + ignore: E203,E701,W503,W504 max_line_length: 88 path: src plugins: flake8-black flake8-isort flake8-quotes diff --git a/.gitignore b/.gitignore index 86aaf7c..8bd26a6 100644 --- a/.gitignore +++ b/.gitignore @@ -1,5 +1,5 @@ prompts/__pycache__ -rich_query_index .DS_Store .env -__pycache__ \ No newline at end of file +__pycache__ +src/query_index \ No newline at end of file diff --git a/.vscode/settings.json b/.vscode/settings.json index e9b025c..4706399 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,11 +1,14 @@ { "git.ignoreLimitWarning": true, "editor.formatOnSave": true, - "flake8.args": ["--max-line-length=88"], + "flake8.args": [ + "--max-line-length=88" + ], "[python]": { "editor.codeActionsOnSave": { "source.organizeImports.python": "explicit" }, - "editor.defaultFormatter": "ms-python.black-formatter" + "editor.defaultFormatter": "ms-python.black-formatter", + "editor.formatOnSave": true, } -} +} \ No newline at end of file diff --git a/INSTALL.md b/INSTALL.md index c9b99a9..11a7441 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -52,7 +52,7 @@ curl -fsSL https://ollama.com/install.sh | sh Run the Ollama application: ```bash -ollama run llama3 +ollama run codellama ``` ## Step 7: Start the Flask Application diff --git a/app.py b/app.py deleted file mode 100644 index ed137e9..0000000 --- a/app.py +++ /dev/null @@ -1,49 +0,0 @@ -import sys -from flask import Flask, request, render_template, jsonify -from index import load_index, query_engine -from query_reformulation import fetch_related_taxons -import json -import logging - - -app = Flask("goat_nlp") - -handler = logging.StreamHandler(sys.stdout) -handler.setFormatter(logging.Formatter( - '%(asctime)s - %(name)s - %(levelname)s - %(message)s')) -app.logger.addHandler(handler) -app.logger.setLevel(logging.INFO) - - -def chat_bot_rag(query): - entity_taxon_map = fetch_related_taxons(query) - - return query_engine.custom_query(query, - entity_taxon_map) - - -@app.route('/') -def home(): - return render_template('chat.html') - - -@app.route('/rebuildIndex') -def index(): - load_index(force_reload=True) - - -@app.route('/chat', methods=['POST']) -def chat(): - user_message = request.form['user_input'] - bot_message = chat_bot_rag(user_message) - - try: - bot_message = json.loads(bot_message)["url"] - except Exception: - pass - - return jsonify({'response': str(bot_message)}) - - -if __name__ == '__main__': - app.run(debug=True) diff --git a/prompt.py b/prompt.py deleted file mode 100644 index 766c7ca..0000000 --- a/prompt.py +++ /dev/null @@ -1,49 +0,0 @@ -from llama_index.core import PromptTemplate - - -QUERY_PROMPT = PromptTemplate('''We need to query a database that is exposed -by an API that has its own query syntax. I am giving you the query by the user, -you need to convert it to the API counter part. Use the examples given below as -reference: - -{context_str} - ------- - -The current date and time is {time} -Use this for any time related calculation - -We have also fetched some related entities and their taxon id: -{entity_taxon_map} -Use the best matching result from this in the final output. - - -Query given by the user: -{query_str} - - -Return your response in a JSON of the following pattern: -{{ - "url": "" -}} -I do not want any explanation, return ONLY the json -''') - -ENTITY_PROMPT = '''The following query is given by the user: - -{query} - -We need to make an API call using this query. -For that we need to convert all the entities in this query to their -scientific counterparts (specifically their family/species name). -For e.g. cat/fox will be translated to Felidae, elephant to Elephantidae. -Return all entities and their converted form as a single list of strings in a JSON of the following format: -{{ - "entity": ["", ""] -}} -I do not want any explanation, return ONLY the json -''' - - -def wrap_with_entity_prompt(query: str): - return ENTITY_PROMPT.format(query=query) diff --git a/query_reformulation.py b/query_reformulation.py deleted file mode 100644 index 154bae6..0000000 --- a/query_reformulation.py +++ /dev/null @@ -1,75 +0,0 @@ -from llama_index.core import Settings -from prompt import wrap_with_entity_prompt -import os -import json -import requests -import logging - -logger = logging.getLogger('goat_nlp.query_reformulation') - - -def fetch_related_taxons(query: str): - """ - Fetches related taxons for a given query. - - Args: - query (str): The query for which related taxons need to be fetched. - - Returns: - dict: A dictionary mapping entities to their corresponding taxons. - - Raises: - Exception: If an error occurs while making the API call to retrieve - taxons. - - Example: - >>> query = "find the number of assemblies for bat" - >>> fetch_related_taxons(query) - {'bat': ['Chiroptera', 'bat']} - - """ - entity_taxon_map = {} - for _ in range(int(os.getenv("RETRY_COUNT", 3))): - try: - llm_response = Settings.llm.complete(wrap_with_entity_prompt(query)) - entities = json.loads(llm_response.text)['entity'] - logger.info(entities) - entity_taxon_map = goat_api_call_for_taxon(entities) - break - except Exception: - pass - return entity_taxon_map - - -def goat_api_call_for_taxon(entities: list) -> dict: - """ - Makes an API call to retrieve taxons for a list of entities. - - Args: - entities (list): A list of entities for which taxons need to be - retrieved. - - Returns: - dict: A dictionary mapping entities to their corresponding taxons. - - Raises: - Exception: If an error occurs while making the API call to retrieve - taxons. - - Example: - >>> entities = ["bat", "cat", "dog"] - >>> goat_api_call_for_taxon(entities) - {'bat': ['Chiroptera', 'bat'], 'cat': ['Felis', 'cat'], - 'dog': ['Canis', 'dog']} - """ - entity_result_map = {} - for entity in entities: - try: - response = requests.get(os.getenv('GOAT_BASE_URL', 'https://goat.genomehubs.org/api/v2') - + f"/lookup?searchTerm={entity}" - + "&result=taxon&taxonomy=ncbi") - json_data = response.json() if response and response.status_code == 200 else None - entity_result_map[entity] = [x["result"] for x in json_data['results']] - except Exception: - pass - return entity_result_map diff --git a/rich_queries/queryV1.json b/rich_queries/queryV1.json deleted file mode 100644 index 9e54fee..0000000 --- a/rich_queries/queryV1.json +++ /dev/null @@ -1,70 +0,0 @@ -[ - { - "english_query": "What species of bats have been sequenced?", - "api_query": "https://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%289397%5BChiroptera%5D%29%20AND%20tax_rank%28species%29%20AND%20assembly_span&excludeMissing%5B0%5D=assembly_span&excludeAncestral%5B0%5D=assembly_span" - }, - { - "english_query": "How many assemblies have been produced this month?", - "api_query": "https://goat.genomehubs.org/search?result=assembly&includeEstimates=false&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=last_updated%3E%3D2024-05-01&fields=assembly_span%2Cassembly_level%2Clast_updated&names=&ranks=&excludeMissing%5B0%5D=assembly_level" - }, - { - "english_query": "What’s the sequencing status of the greater spear-nosed bat?", - "api_query": "https://goat.genomehubs.org/search?query=tax_name%289423%5BPhyllostomus%20hastatus%5D%29%20AND%20sequencing_status&result=taxon&includeEstimates=false&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=sequencing_status&names=&ranks=" - }, - { - "english_query": "What information do we have about spiders?", - "api_query": "https://goat.genomehubs.org/record?recordId=6893&result=taxon&taxonomy=ncbi#Araneae" - }, - { - "english_query": "Does Borneo magnolia have RNA-sequencing?", - "api_query": "https://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=total_runs%2Ctotal_reads%2Clibrary_source%2Cplatform%2Csra_accession%2Crun_accession%2Creads&names=&ranks=&query=tax_name%282933196%5BMagnolia%20borneensis%5D%29%20AND%20sra_accession&emptyColumns=true" - }, - { - "english_query": "What mushroom species have RNA seq?", - "api_query": "https://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=total_runs%2Ctotal_reads%2Clibrary_source%2Cplatform%2Csra_accession%2Crun_accession%2Creads&names=&ranks=&query=tax_tree%285204%5BBasidiomycota%5D%29%20AND%20tax_rank%28species%29%20AND%20sra_accession" - }, - { - "english_query": "How many bird species have genome assemblies?", - "api_query": "https://goat.genomehubs.org/search?query=tax_tree%288782%5BAves%5D%29%20AND%20tax_rank%28species%29%20AND%20assembly_span&result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&emptyColumns=false&excludeAncestral%5B0%5D=assembly_span&excludeMissing%5B0%5D=assembly_spanhttps://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%281442%5BAves%5D%29%20AND%20tax_rank%28species%29%20AND%20assembly_span&excludeMissing%5B0%5D=assembly_span&excludeAncestral%5B0%5D=assembly_span" - }, - { - "english_query": "What sequencing platforms are used for rodent transcriptomes?", - "api_query": "https://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=platform&names=&ranks=&query=tax_tree%289989%5BRodentia%5D%29%20AND%20platformhttps://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=platform&names=&ranks=&query=tax_tree%281472%5BRodentia%5D%29%20AND%20platform" - }, - { - "english_query": "List all assemblies for humans", - "api_query": "https://goat.genomehubs.org/search?result=assembly&includeEstimates=false&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_name%289606%5BHomo%20sapiens%5D%29%20AND%20assembly_level" - }, - { - "english_query": "Find samples with RNA-seq data for wolves", - "api_query": "https://goat.genomehubs.org/search?result=sample&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=sra_accession%2Clibrary_source%2Crun_accession%2Cplatform%2Creads&names=&ranks=&query=tax_name%289612%5BCanis%20lupus%5D%29%20AND%20sra_accession" - }, - { - "english_query": "How many genome assemblies are available for the genus fruit fly?", - "api_query": "https://goat.genomehubs.org/search?result=assembly&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%287215%5BDrosophila%5D%29%20AND%20assembly_span" - }, - { - "english_query": "What are the latest assemblies for the family cat?", - "api_query": "https://goat.genomehubs.org/search?result=assembly&includeEstimates=false&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%289681%5BFelidae%5D%29%20AND%20last_updated%3E%3D2024-01-01&fields=assembly_span%2Cassembly_level%2Clast_updatedhttps://goat.genomehubs.org/search?result=assembly&includeEstimates=false&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%289685%5BFelidae%5D%29%20AND%20last_updated%3E%3D2024-01-01&fields=assembly_span%2Cassembly_level%2Clast_updated" - }, - { - "english_query": "Which species in the order Primates have been sequenced?", - "api_query": "https://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%289443%5BPrimates%5D%29%20AND%20tax_rank%28species%29%20AND%20assembly_span&excludeMissing%5B0%5D=assembly_span&excludeAncestral%5B0%5D=assembly_span" - }, - { - "english_query": "Do any samples for cattle include RNA-seq data?", - "api_query": "https://goat.genomehubs.org/search?result=sample&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=sra_accession%2Clibrary_source%2Crun_accession%2Cplatform%2Creads&names=&ranks=&query=tax_name%289913%5BBos%20taurus%5D%29%20AND%20sra_accession" - }, - { - "english_query": "How many genome assemblies for fungi have been updated recently?", - "api_query": "https://goat.genomehubs.org/search?result=assembly&includeEstimates=false&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%284751%5BFungi%5D%29%20AND%20last_updated%3E%3D2024-01-01" - }, - { - "english_query": "Find all genome assemblies for reptiles.", - "api_query": "https://goat.genomehubs.org/search?result=assembly&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%288504%5BReptilia%5D%29%20AND%20assembly_span&excludeMissing%5B0%5D=assembly_spanhttps://goat.genomehubs.org/search?result=assembly&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&query=tax_tree%288457%5BReptilia%5D%29%20AND%20assembly_span&excludeMissing%5B0%5D=assembly_span" - }, - { - "english_query": "What are the available RNA-seq platforms for the common fruit fly?", - "api_query": "https://goat.genomehubs.org/search?result=taxon&includeEstimates=true&summaryValues=count&taxonomy=ncbi&size=100&offset=0&fields=platform&names=&ranks=&query=tax_name%287227%5BDrosophila%20melanogaster%5D%29%20AND%20sra_accession" - } -] diff --git a/setup.cfg b/setup.cfg index cd29a96..66427f0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,4 +1,4 @@ [flake8] max-line-length = 88 -extend-ignore = E203,E701 +extend-ignore = E203,E701,W503,W504 inline-quotes = double \ No newline at end of file diff --git a/src/app.py b/src/app.py new file mode 100644 index 0000000..91ba993 --- /dev/null +++ b/src/app.py @@ -0,0 +1,93 @@ +import json +import logging +import os +import sys +import urllib + +from flask import Flask, render_template, request + +from index import load_index, query_engine + +app = Flask("goat_nlp") + +handler = logging.StreamHandler(sys.stdout) +handler.setFormatter( + logging.Formatter("%(asctime)s - %(name)s - %(levelname)s - %(message)s") +) +app.logger.addHandler(handler) +app.logger.setLevel(logging.INFO) + + +def construct_url(json_output): + base_url = "https://goat.genomehubs.org/" + endpoint = "search?" + suffix = ( + "&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0" + + "&fields=assembly_level%2Cassembly_span%2Cgenome_size%2C" + + "chromosome_number%2Chaploid_number&names=common_name&ranks=" + + "&includeEstimates=false&size=100" + ) + + if json_output["intent"] == "count": + endpoint = "api/v2/count?" + elif json_output["intent"] == "record": + endpoint = "record?" + + params = [] + + if "taxon" in json_output: + params.append(f"tax_tree(* {json_output['taxon']})") + if "rank" in json_output: + params.append(f"tax_rank({json_output['rank']})") + if "field" in json_output: + params.append(f"{json_output['field']}") + if "time_frame_query" in json_output: + params.append(f"{json_output['time_frame_query']}") + suffix = ( + "&result=assembly&summaryValues=count&taxonomy=ncbi&offset=0" + + "&fields=assembly_level%2Cassembly_span%2Cgenome_size%2C" + + "chromosome_number%2Chaploid_number&names=common_name&ranks=" + + "&includeEstimates=false&size=100" + ) + + query_string = " AND ".join(params) + return base_url + endpoint + "query=" + urllib.parse.quote(query_string) + suffix + + +def chat_bot_rag(query): + # entity_taxon_map = fetch_related_taxons(query) + for _ in range(int(os.getenv("RETRY_COUNT", 3))): + try: + model_response = json.loads(query_engine.custom_query(query)) + return { + "json_debug": json.dumps(model_response, indent=2), + "url": construct_url(model_response), + } + # return construct_url(json.loads(query_engine.custom_query(query))) + except Exception as e: + app.logger.error(f"Error: {e}") + app.logger.error("Retrying...") + model_response = json.loads(query_engine.custom_query(query)) + return { + "json_debug": json.dumps(model_response, indent=2), + "url": construct_url(model_response), + } + + +@app.route("/") +def home(): + return render_template("chat.html") + + +@app.route("/rebuildIndex") +def index(): + load_index(force_reload=True) + + +@app.route("/chat", methods=["POST"]) +def chat(): + return chat_bot_rag(request.form["user_input"]) + + +if __name__ == "__main__": + app.run(debug=True) diff --git a/index.py b/src/index.py similarity index 68% rename from index.py rename to src/index.py index 79bfad1..105dea6 100644 --- a/index.py +++ b/src/index.py @@ -1,29 +1,33 @@ +import json +import os + from dotenv import load_dotenv -from llama_index.core import VectorStoreIndex, StorageContext -from llama_index.core import load_index_from_storage -from llama_index.core import get_response_synthesizer -from llama_index.core import SimpleDirectoryReader -from llama_index.core import Settings -from llama_index.llms.ollama import Ollama +from llama_index.core import ( + Settings, + StorageContext, + VectorStoreIndex, + get_response_synthesizer, + load_index_from_storage, +) +from llama_index.core.schema import TextNode from llama_index.embeddings.huggingface import HuggingFaceEmbedding -import os +from llama_index.llms.ollama import Ollama from prompt import QUERY_PROMPT from query_engine import GoaTAPIQueryEngine - load_dotenv() Settings.embed_model = HuggingFaceEmbedding(model_name="BAAI/bge-base-en-v1.5") -Settings.llm = Ollama(model="llama3", base_url=os. - getenv("OLLAMA_HOST_URL", "http://127.0.0.1:11434"), - request_timeout=36000.0) +Settings.llm = Ollama( + model="codellama", + base_url=os.getenv("OLLAMA_HOST_URL", "http://127.0.0.1:11434"), + request_timeout=36000.0, +) Settings.chunk_size = 256 -def build_index(documents, - save_dir="rich_query_index", - force=False): - ''' +def build_index(documents, save_dir="query_index", force=False): + """ Build the index from the given rich queries and save it in the specified directory. @@ -40,11 +44,9 @@ def build_index(documents, Raises: - FileNotFoundError: If the save directory does not exist and force is set to False. - ''' + """ if not os.path.exists(save_dir) or force: - query_index = VectorStoreIndex.from_documents( - documents - ) + query_index = VectorStoreIndex(documents) query_index.storage_context.persist(persist_dir=save_dir) else: query_index = load_index_from_storage( @@ -55,7 +57,7 @@ def build_index(documents, def load_index(force_reload=False): - ''' + """ Load the index and query engine for the GoaT NLP system. Parameters: @@ -65,19 +67,21 @@ def load_index(force_reload=False): Returns: tuple: A tuple containing the index and query engine. - ''' - documents = SimpleDirectoryReader( - "rich_queries" - ).load_data() + """ + query_list = json.load(open("queries/script_generated_queries.json")) + for x in query_list: + x.pop("api_query", None) + question_store = {x["english_query"]: x for x in query_list} - index = build_index(documents, force=force_reload) - retriever = index.as_retriever(similarity_top_k=3) + index = build_index([TextNode(text=x) for x in question_store], force=force_reload) + retriever = index.as_retriever(similarity_top_k=5) synthesizer = get_response_synthesizer(response_mode="compact") query_engine = GoaTAPIQueryEngine( retriever=retriever, response_synthesizer=synthesizer, llm=Settings.llm, + question_store=question_store, qa_prompt=QUERY_PROMPT, ) diff --git a/src/prompt.py b/src/prompt.py new file mode 100644 index 0000000..504aafc --- /dev/null +++ b/src/prompt.py @@ -0,0 +1,42 @@ +from llama_index.core import PromptTemplate + +QUERY_PROMPT = PromptTemplate( + """We need to parse a query given by the user. +The user is asking a genomics question, we need to parse the query into different parts. +Use the examples given below as reference: + +{context_str} + +------ + +The current date and time is {time} +Use this for any time related calculation +Change all entities from PLURAL to SINGULAR form +e.g. elephants will be converted to elephant in the output, wolves to wolf + + +Query given by the user: +{query_str} + +------ +Omit fields that are not required and remember that the examples given to you are +just basic samples, you may have to combine multiple fields to get the correct output. + +Time related queries will always have the last_updated field in the time_frame_query + part. +You can use >= and <= operators to filter such data. e.g. last_updated>=2021-01-01 + +------ +ONLY RETURN THE JSON OF THE FOLLOWING FORMAT AND NOTHING ELSE +{{ + "taxon": "...", + "rank": "...", + "phrase": "...", + "intent": "...", + "field": "..." + "time_frame": "...", + "time_frame_query": "..." + ... +}} +""" +) diff --git a/src/queries/script_generated_queries.json b/src/queries/script_generated_queries.json new file mode 100644 index 0000000..624fa29 --- /dev/null +++ b/src/queries/script_generated_queries.json @@ -0,0 +1,10735 @@ +[ + { + "english_query": "Which species in the Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of fruit fly have sequencing platforms?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for bat sequencing platforms?", + "json_output": { + "taxon": "bat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of reptile have RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does reptile have RNA-sequencing?", + "json_output": { + "taxon": "reptile", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of rodent have RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for gnat RNA-seq data?", + "json_output": { + "taxon": "gnat", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for rodent have been updated this month?", + "json_output": { + "taxon": "rodent", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for wolf have been updated ?", + "json_output": { + "taxon": "wolf", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of fungi have sequencing platforms?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "data_type": "sequencing 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"json_output": { + "taxon": "reptile", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+reptile%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about fruit fly?", + "json_output": { + "taxon": "fruit fly", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+fruit+fly%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of fruit fly have RNA-seq data?", + "json_output": 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"english_query": "What is the sequencing status of the human?", + "json_output": { + "taxon": "human", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of Borneo magnolia have RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of Borneo magnolia have RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for rat include genome assemblies?", + "json_output": { + "taxon": "rat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of mushroom have been sequenced?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for cat RNA-seq data?", + "json_output": { + "taxon": "cat", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of human have RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for reptile sequencing platforms?", + "json_output": { + "taxon": "reptile", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of wolf have RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for fungi genome assemblies?", + "json_output": { + "taxon": "fungi", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rat have been sequenced?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for fungi have been updated recently?", + "json_output": { + "taxon": "fungi", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the bat have been sequenced?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of Primate have sequencing platforms?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of reptile have RNA-sequencing?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the rat?", + "json_output": { + "taxon": "rat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rat have been sequenced?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fungi have RNA-sequencing?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for Borneo magnolia have been updated this month?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of rat have sequencing platforms?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the gnat?", + "json_output": { + "taxon": "gnat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the wolf?", + "json_output": { + "taxon": "wolf", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of wolf have sequencing platforms?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of rodent have sequencing platforms?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the fruit fly?", + "json_output": { + "taxon": "fruit fly", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for fungi have been updated ?", + "json_output": { + "taxon": "fungi", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of human have sequencing platforms?", + "json_output": { + "taxon": "human", + "rank": "species", + "data_type": "sequencing 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{ + "taxon": "rodent", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the reptile?", + "json_output": { + "taxon": "reptile", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of reptile have sequencing platforms?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for human have been updated this month?", + "json_output": { + "taxon": "human", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for reptile have been updated this month?", + "json_output": { + "taxon": "reptile", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of spider have sequencing platforms?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the Primate?", + "json_output": { + "taxon": "Primate", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of reptile have RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of cattle have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the Borneo magnolia?", + "json_output": { + "taxon": "Borneo magnolia", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of wolf have sequencing platforms?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for reptile have been updated ?", + "json_output": { + "taxon": "reptile", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of gnat have RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for cattle genome assemblies?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for fruit fly have been updated ?", + "json_output": { + "taxon": "fruit fly", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for Borneo magnolia genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for spider sequencing platforms?", + "json_output": { + "taxon": "spider", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for reptile have been updated recently?", + "json_output": { + "taxon": "reptile", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does human have been sequenced?", + "json_output": { + "taxon": "human", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of rat have sequencing platforms?", + "json_output": { + "taxon": "rat", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for rat genome assemblies?", + "json_output": { + "taxon": "rat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for fruit fly include genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of Primate have RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for gnat have been updated this month?", + "json_output": { + "taxon": "gnat", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for spider genome assemblies?", + "json_output": { + "taxon": "spider", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for Primate genome assemblies?", + "json_output": { + "taxon": "Primate", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of Primate have RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for mushroom have been updated ?", + "json_output": { + "taxon": "mushroom", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of rat have RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many RNA-seq data have been produced this month?", + "json_output": { + "data_type": "RNA-seq data", + "time_frame": "this month", + "intent": "count", + "field": "sra_accession", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=sra_accession+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about spider?", + "json_output": { + "taxon": "spider", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+spider%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of cat have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for human include RNA-seq data?", + "json_output": { + "taxon": "human", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many RNA-seq data have been produced ?", + "json_output": { + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of rat have RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for human RNA-seq data?", + "json_output": { + "taxon": "human", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of reptile have sequencing platforms?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of reptile have RNA-sequencing?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of mushroom have RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about rodent?", + "json_output": { + "taxon": "rodent", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+rodent%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for rat have been updated recently?", + "json_output": { + "taxon": "rat", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the bird?", + "json_output": { + "taxon": "bird", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of wolf have RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for Primate have been updated this month?", + "json_output": { + "taxon": "Primate", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for cattle include genome assemblies?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for cat have been updated ?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the bat?", + "json_output": { + "taxon": "bat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of cattle have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many RNA-seq data have been produced recently?", + "json_output": { + "data_type": "RNA-seq data", + "time_frame": "recently", + "intent": "count", + "field": "sra_accession", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=sra_accession+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of cat have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for cattle have been updated this month?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many sequencing platforms have been produced recently?", + "json_output": { + "data_type": "sequencing platforms", + "time_frame": "recently", + "intent": "count", + "field": "platform", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=platform+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of spider have RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for fruit fly have been updated recently?", + "json_output": { + "taxon": "fruit fly", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of Borneo magnolia have sequencing platforms?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rat have been sequenced?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of fruit fly have 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"https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the mushroom?", + "json_output": { + "taxon": "mushroom", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the reptile have RNA-sequencing?", + "json_output": { + "taxon": 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+ "english_query": "What genus of cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for fruit fly have been updated this month?", + "json_output": { + "taxon": "fruit fly", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many sequencing platforms have been produced this month?", + "json_output": { + "data_type": "sequencing platforms", + "time_frame": "this month", + "intent": "count", + "field": "platform", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=platform+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rat have been sequenced?", + "json_output": { + "taxon": 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"english_query": "Which species in the fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for spider have been updated ?", + "json_output": { + "taxon": "spider", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "include RNA-seq data", + 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of rodent have RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the Primate?", + "json_output": { + "taxon": "Primate", + "intent": "search" 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"english_query": "What sequencing platforms are used for fruit fly RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": 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RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of spider have RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of bat have sequencing platforms?", + "json_output": { + "taxon": "bat", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the cattle?", + "json_output": { + "taxon": "cat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of fruit fly have genome assemblies?", + 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for cat include sequencing platforms?", + "json_output": { + "taxon": "cat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rat have been sequenced?", + "json_output": { + "taxon": "rat", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the bat?", + "json_output": { + "taxon": "bat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "order", + 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for Borneo magnolia include genome assemblies?", + 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of spider include RNA-seq data?", + "json_output": { + "taxon": 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RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": 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"phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of mushroom have been sequenced?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for rodent include genome assemblies?", + "json_output": { + "taxon": "rodent", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bat have been sequenced?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of rodent have RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "genus", 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samples for bat include genome assemblies?", + "json_output": { + "taxon": "bat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for human include genome assemblies?", + "json_output": { + "taxon": "human", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for rat have been updated ?", + "json_output": { + "taxon": "rat", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the gnat?", + "json_output": { + "taxon": "gnat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of rodent have sequencing platforms?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for gnat genome assemblies?", + "json_output": { + "taxon": "gnat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of bat have sequencing platforms?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of rat have sequencing platforms?", + "json_output": { + "taxon": "rat", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of bird have RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for gnat include sequencing platforms?", + "json_output": { + "taxon": "gnat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for Borneo magnolia have been updated recently?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the cat?", + "json_output": { + "taxon": "cat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for wolf have been updated recently?", + "json_output": { + "taxon": "wolf", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for rat sequencing platforms?", + "json_output": { + "taxon": "rat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of Primate have RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does human have genome assemblies?", + "json_output": { + "taxon": "human", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of Primate have sequencing platforms?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for rodent RNA-seq data?", + "json_output": { + "taxon": "rodent", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for fruit fly genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for bat RNA-seq data?", + "json_output": { + "taxon": "bat", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bat have been sequenced?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of fruit fly have sequencing platforms?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "data_type": 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+ "english_query": "How many genome assemblies for mushroom have been updated recently?", + "json_output": { + "taxon": "mushroom", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of cat have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about cat?", + "json_output": { + "taxon": "cat", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+cat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for reptile include sequencing platforms?", + "json_output": { + "taxon": "reptile", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have been 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"english_query": "Which genus in the bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have 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spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for bat have been updated recently?", + "json_output": { + "taxon": "bat", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the fungi have RNA-sequencing?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of bird have RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "have 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"english_query": "Do any samples for wolf include genome assemblies?", + "json_output": { + "taxon": "wolf", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of fungi have RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of cattle have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "have 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+ { + "english_query": "How many family of wolf have sequencing platforms?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the spider?", + "json_output": { + "taxon": "spider", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for cattle RNA-seq data?", + "json_output": { + "taxon": "cat", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for fungi sequencing platforms?", + "json_output": { + "taxon": "fungi", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of cat have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of spider have been sequenced?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for Primate sequencing platforms?", + "json_output": { + "taxon": "Primate", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for human have been updated ?", + "json_output": { + "taxon": "human", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of bird have RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of cat have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of gnat have RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for Primate have been updated recently?", + "json_output": { + "taxon": "Primate", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of rodent have sequencing platforms?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of fruit fly have RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fungi have RNA-sequencing?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about rat?", + "json_output": { + "taxon": "rat", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+rat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the mushroom?", + "json_output": { + "taxon": "mushroom", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for reptile include genome assemblies?", + "json_output": { + "taxon": "reptile", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for Primate RNA-seq data?", + "json_output": { + "taxon": "Primate", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the spider have been sequenced?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rat have been sequenced?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of human have sequencing platforms?", + "json_output": { + "taxon": "human", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for wolf have been updated this month?", + "json_output": { + "taxon": "wolf", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of reptile have RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for fungi include sequencing platforms?", + "json_output": { + "taxon": "fungi", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of fruit fly have RNA-seq data?", + "json_output": { 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"https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of fungi have RNA-sequencing?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for spider have been updated this month?", + "json_output": { + "taxon": "spider", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": 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"json_output": { + "taxon": "mushroom", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of spider have RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of cattle have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of fungi have RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for rodent have been updated ?", + "json_output": { + "taxon": "rodent", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for human sequencing platforms?", + "json_output": { + "taxon": "human", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of fruit fly have sequencing platforms?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for gnat have been updated ?", + "json_output": { + "taxon": "gnat", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the mushroom have been sequenced?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of cattle have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of bat have RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bat have been sequenced?", + "json_output": { + "taxon": "bat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the rat?", + "json_output": { + "taxon": "rat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of cattle have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about bird?", + "json_output": { + "taxon": "bird", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+bird%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about mushroom?", + "json_output": { + "taxon": "mushroom", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+mushroom%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of cat have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of spider have been sequenced?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for spider have been updated recently?", + "json_output": { + "taxon": "spider", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for fruit fly include sequencing platforms?", + "json_output": { + "taxon": "fruit fly", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for bird have been updated ?", + "json_output": { + "taxon": "bird", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the mushroom have been sequenced?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does mushroom have been sequenced?", + "json_output": { + "taxon": "mushroom", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for spider include sequencing platforms?", + "json_output": { + "taxon": "spider", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about human?", + "json_output": { + "taxon": "human", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+human%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of fruit fly have RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the spider?", + "json_output": { + "taxon": "spider", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for fungi have been updated this month?", + "json_output": { + "taxon": "fungi", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the reptile have RNA-sequencing?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for fruit fly sequencing platforms?", + "json_output": { + "taxon": "fruit fly", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fungi have RNA-sequencing?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of reptile have RNA-sequencing?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for wolf genome assemblies?", + "json_output": { + "taxon": "wolf", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the cat?", + "json_output": { + "taxon": "cat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of fruit fly have sequencing platforms?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for bird include sequencing platforms?", + "json_output": { + "taxon": "bird", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of mushroom have been sequenced?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for Primate have been updated ?", + "json_output": { + "taxon": "Primate", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the human?", + "json_output": { + "taxon": "human", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for mushroom include genome assemblies?", + "json_output": { + "taxon": "mushroom", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for bat include sequencing platforms?", + "json_output": { + "taxon": "bat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bat have been sequenced?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bat have been sequenced?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for cattle have been updated ?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for human include sequencing platforms?", + "json_output": { + "taxon": "human", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of mushroom have sequencing platforms?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does human include RNA-seq data?", + "json_output": { + "taxon": "human", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of cat have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for Borneo magnolia sequencing platforms?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for cat sequencing platforms?", + "json_output": { + "taxon": "cat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of cattle have RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rodent have been sequenced?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of spider have sequencing platforms?", + "json_output": { + "taxon": "spider", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of spider have RNA-seq data?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of human have sequencing platforms?", + "json_output": { + "taxon": "human", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of Primate have sequencing platforms?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for bird RNA-seq data?", + "json_output": { + "taxon": "bird", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the fungi?", + "json_output": { + "taxon": "fungi", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for gnat have been updated recently?", + "json_output": { + "taxon": "gnat", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about bat?", + "json_output": { + "taxon": "bat", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+bat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of reptile have sequencing platforms?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of human have RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of gnat have sequencing platforms?", + "json_output": { + "taxon": "gnat", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of Primate have sequencing platforms?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about gnat?", + "json_output": { + "taxon": "gnat", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+gnat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about Borneo magnolia?", + "json_output": { + "taxon": "Borneo magnolia", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+Borneo+magnolia%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of bird have sequencing platforms?", + "json_output": { + "taxon": "bird", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for bat have been updated ?", + "json_output": { + "taxon": "bat", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the rodent?", + "json_output": { + "taxon": "rodent", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Borneo magnolia have RNA-sequencing?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the fungi?", + "json_output": { + "taxon": "fungi", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for Primate include sequencing platforms?", + "json_output": { + "taxon": "Primate", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rat have been sequenced?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about fungi?", + "json_output": { + "taxon": "fungi", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+fungi%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of mushroom have RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies have been produced recently?", + "json_output": { + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of human have RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for wolf include sequencing platforms?", + "json_output": { + "taxon": "wolf", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the rodent?", + "json_output": { + "taxon": "rodent", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for cat genome assemblies?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for bird have been updated recently?", + "json_output": { + "taxon": "bird", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of bat have sequencing platforms?", + "json_output": { + "taxon": "bat", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of wolf have RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of rat have sequencing platforms?", + "json_output": { + "taxon": "rat", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for rodent genome assemblies?", + "json_output": { + "taxon": "rodent", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for rodent have been updated recently?", + "json_output": { + "taxon": "rodent", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fungi have genome assemblies?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bird have been sequenced?", + "json_output": { + "taxon": "bird", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of spider have sequencing platforms?", + "json_output": { + "taxon": "spider", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many sequencing platforms have been produced ?", + "json_output": { + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for bird have been updated this month?", + "json_output": { + "taxon": "bird", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fruit fly include RNA-seq data?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for bird sequencing platforms?", + "json_output": { + "taxon": "bird", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What are the available RNA-seq platforms for the cattle?", + "json_output": { + "taxon": "cat", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of bird have sequencing platforms?", + "json_output": { + "taxon": "bird", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for Borneo magnolia include sequencing platforms?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for cat include RNA-seq data?", + "json_output": { + "taxon": "cat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of Borneo magnolia have sequencing platforms?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of cattle have sequencing platforms?", + "json_output": { + "taxon": "cat", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for reptile RNA-seq data?", + "json_output": { + "taxon": "reptile", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for cat include genome assemblies?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about cattle?", + "json_output": { + "taxon": "cat", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+cat%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for human have been updated recently?", + "json_output": { + "taxon": "human", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cattle have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of wolf have sequencing platforms?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the mushroom include RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of bat have sequencing platforms?", + "json_output": { + "taxon": "bat", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of reptile have sequencing platforms?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of gnat have RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does spider have been sequenced?", + "json_output": { + "taxon": "spider", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of human have sequencing platforms?", + "json_output": { + "taxon": "human", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of Borneo magnolia have RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bat have RNA-sequencing?", + "json_output": { + "taxon": "bat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of fungi have sequencing platforms?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of bird have been sequenced?", + "json_output": { + "taxon": "bird", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for cattle have been updated recently?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "time_frame": "recently", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=recent" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+assembly_span+AND+last_updated%3E%3Drecent&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of rodent have sequencing platforms?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rat have RNA-sequencing?", + "json_output": { + "taxon": "rat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of rat have RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fruit fly have been sequenced?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of gnat have sequencing platforms?", + "json_output": { + "taxon": "gnat", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for Primate include genome assemblies?", + "json_output": { + "taxon": "Primate", + "data_type": "genome 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"taxon": "mushroom", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of reptile have been sequenced?", + "json_output": { + "taxon": "reptile", + "rank": 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"english_query": "What genus of Primate include RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of gnat have genome assemblies?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of bird have sequencing platforms?", + "json_output": { + "taxon": "bird", + "rank": "species", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the spider have been sequenced?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of Primate have RNA-seq data?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for rat have been updated this month?", + "json_output": { + "taxon": "rat", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bat include RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for wolf include RNA-seq data?", + "json_output": { + "taxon": "wolf", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for mushroom genome assemblies?", + "json_output": { + "taxon": "mushroom", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the cat have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the Borneo magnolia include RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about Primate?", + "json_output": { + "taxon": "Primate", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+Primate%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies have been produced this month?", + "json_output": { + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does wolf have been sequenced?", + "json_output": { + "taxon": "wolf", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of fungi have RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rat include RNA-seq data?", + "json_output": { + "taxon": "rat", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of fungi have sequencing platforms?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of gnat have sequencing platforms?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of cattle have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for cat have been updated this month?", + "json_output": { + "taxon": "cat", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+cat%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of mushroom have genome assemblies?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of rat have RNA-seq data?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the human include RNA-seq data?", + "json_output": { + "taxon": "human", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the cattle have RNA-sequencing?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the Borneo magnolia have genome assemblies?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of wolf have genome assemblies?", + "json_output": { + "taxon": "wolf", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the human have been sequenced?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for spider include RNA-seq data?", + "json_output": { + "taxon": "spider", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Primate have been sequenced?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for rat include sequencing platforms?", + "json_output": { + "taxon": "rat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of bat have RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the gnat include RNA-seq data?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of reptile have genome assemblies?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of rat have genome assemblies?", + "json_output": { + "taxon": "rat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of Borneo magnolia have sequencing platforms?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "order", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28order%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for bat genome assemblies?", + "json_output": { + "taxon": "bat", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for mushroom RNA-seq data?", + "json_output": { + "taxon": "mushroom", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the wolf have RNA-sequencing?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for spider RNA-seq data?", + "json_output": { + "taxon": "spider", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What information do we have about wolf?", + "json_output": { + "taxon": "wolf", + "intent": "record" + }, + "api_query": "https://goat.genomehubs.org/record?query=tax_tree%28%2A+wolf%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genus of cat have genome assemblies?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "have 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have been sequenced?", + "json_output": { + "taxon": "cat", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of Primate have RNA-sequencing?", + "json_output": { + "taxon": "Primate", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the fruit fly?", + "json_output": { + "taxon": "fruit fly", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of fruit fly have genome assemblies?", + "json_output": { + "taxon": "fruit fly", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for gnat sequencing platforms?", + "json_output": { + "taxon": "gnat", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of bat have RNA-seq data?", + "json_output": { + "taxon": "bat", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the fungi have RNA-sequencing?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for wolf RNA-seq data?", + "json_output": { + "taxon": "wolf", + "data_type": 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"json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the bird include RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the spider have genome assemblies?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of wolf have RNA-seq data?", + "json_output": { + "taxon": "wolf", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+wolf%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of Borneo magnolia have RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "family", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of spider have RNA-sequencing?", + "json_output": { + "taxon": "spider", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the reptile have RNA-sequencing?", + "json_output": { + "taxon": "reptile", + "rank": 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genome assemblies?", + "json_output": { + "taxon": "bird", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many order of rodent have RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of bird have RNA-sequencing?", + "json_output": { + "taxon": "bird", + "rank": "family", + "phrase": 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"english_query": "Which genus in the cattle include RNA-seq data?", + "json_output": { + "taxon": "cat", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for mushroom include sequencing platforms?", + "json_output": { + "taxon": "mushroom", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the mushroom have RNA-sequencing?", + "json_output": { + "taxon": "mushroom", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What family of rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does bird have genome assemblies?", + "json_output": { + "taxon": "bird", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the Primate have genome assemblies?", + "json_output": { + "taxon": "Primate", + "rank": "genus", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Primate%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "family", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28family%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of reptile include RNA-seq data?", + "json_output": { + "taxon": "reptile", + "rank": "order", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+reptile%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of fungi have sequencing platforms?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of gnat have been sequenced?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many species of bird have RNA-seq data?", + "json_output": { + "taxon": "bird", + "rank": "species", + "data_type": "RNA-seq data", + "intent": "count", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+bird%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for human genome assemblies?", + "json_output": { + "taxon": "human", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the human have genome assemblies?", + "json_output": { + "taxon": "human", + "rank": "family", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What genus of gnat have RNA-sequencing?", + "json_output": { + "taxon": "gnat", + "rank": "genus", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+gnat%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of cat have been sequenced?", + "json_output": { + "taxon": "cat", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+cat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for spider include genome assemblies?", + "json_output": { + "taxon": "spider", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for mushroom have been updated this month?", + "json_output": { + "taxon": "mushroom", + "data_type": "genome assemblies", + "time_frame": "this month", + "intent": "count", + "field": "assembly_span", + "time_frame_query": "last_updated>=2024-06-01" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+assembly_span+AND+last_updated%3E%3D2024-06-01&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the spider have been sequenced?", + "json_output": { + "taxon": "spider", + "rank": "order", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+spider%29+AND+tax_rank%28order%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What is the sequencing status of the bird?", + "json_output": { + "taxon": "bird", + "intent": "search" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bird%29&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which family in the fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "rank": "family", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28family%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies for Borneo magnolia have been updated ?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+Borneo+magnolia%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which species in the Borneo magnolia have been sequenced?", + "json_output": { + "taxon": "Borneo magnolia", + "rank": "species", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Do any samples for rodent include sequencing platforms?", + "json_output": { + "taxon": "rodent", + "data_type": "sequencing platforms", + "intent": "search", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of bat have genome assemblies?", + "json_output": { + "taxon": "bat", + "rank": "species", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+bat%29+AND+tax_rank%28species%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What order of rodent have RNA-sequencing?", + "json_output": { + "taxon": "rodent", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for fungi RNA-seq data?", + "json_output": { + "taxon": "fungi", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of fruit fly have RNA-sequencing?", + "json_output": { + "taxon": "fruit fly", + "rank": "species", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fruit+fly%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does fungi have been sequenced?", + "json_output": { + "taxon": "fungi", + "phrase": "have been sequenced", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many family of mushroom have sequencing platforms?", + "json_output": { + "taxon": "mushroom", + "rank": "family", + "data_type": "sequencing platforms", + "intent": "count", + "field": "platform" + }, + "api_query": "https://goat.genomehubs.org/count?query=tax_tree%28%2A+mushroom%29+AND+tax_rank%28family%29+AND+platform&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which order in the human have RNA-sequencing?", + "json_output": { + "taxon": "human", + "rank": "order", + "phrase": "have RNA-sequencing", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+human%29+AND+tax_rank%28order%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What sequencing platforms are used for Borneo magnolia RNA-seq data?", + "json_output": { + "taxon": "Borneo magnolia", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+Borneo+magnolia%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "What species of rodent include RNA-seq data?", + "json_output": { + "taxon": "rodent", + "rank": "species", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+tax_rank%28species%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Which genus in the fungi include RNA-seq data?", + "json_output": { + "taxon": "fungi", + "rank": "genus", + "phrase": "include RNA-seq data", + "data_type": "RNA-seq data", + "intent": "search", + "field": "sra_accession" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+fungi%29+AND+tax_rank%28genus%29+AND+sra_accession&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "How many genome assemblies have been produced ?", + "json_output": { + "data_type": "genome assemblies", + "intent": "count", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/count?query=assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + }, + { + "english_query": "Does rodent have genome assemblies?", + "json_output": { + "taxon": "rodent", + "phrase": "have genome assemblies", + "data_type": "genome assemblies", + "intent": "search", + "field": "assembly_span" + }, + "api_query": "https://goat.genomehubs.org/search?query=tax_tree%28%2A+rodent%29+AND+assembly_span&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0&fields=assembly_level%2Cassembly_span%2Cgenome_size%2Cchromosome_number%2Chaploid_number&names=common_name&ranks=&includeEstimates=false&size=100" + } +] \ No newline at end of file diff --git a/query_engine.py b/src/query_engine.py similarity index 65% rename from query_engine.py rename to src/query_engine.py index 5713c7e..982645d 100644 --- a/query_engine.py +++ b/src/query_engine.py @@ -1,13 +1,15 @@ +import json import logging -from llama_index.llms.ollama import Ollama +from datetime import datetime + +from llama_index.core import PromptTemplate from llama_index.core.query_engine import CustomQueryEngine -from llama_index.core.retrievers import BaseRetriever from llama_index.core.response_synthesizers import BaseSynthesizer -from llama_index.core import PromptTemplate -from datetime import datetime +from llama_index.core.retrievers import BaseRetriever +from llama_index.llms.ollama import Ollama +logger = logging.getLogger("goat_nlp.query_engine") -logger = logging.getLogger('goat_nlp.query_engine') class GoaTAPIQueryEngine(CustomQueryEngine): """ @@ -25,8 +27,9 @@ class GoaTAPIQueryEngine(CustomQueryEngine): response_synthesizer: BaseSynthesizer llm: Ollama qa_prompt: PromptTemplate + question_store: dict - def custom_query(self, query_str: str, entity_taxon_map: dict): + def custom_query(self, query_str: str): """ Custom query method. @@ -39,14 +42,18 @@ def custom_query(self, query_str: str, entity_taxon_map: dict): """ nodes = self.retriever.retrieve(query_str) - context_str = "\n\n".join([n.node.get_content() for n in nodes]) - current_time = datetime.now().strftime('%Y-%m-%d %H:%M:%S') - populated_prompt = self.qa_prompt.format(context_str=context_str, query_str=query_str, - entity_taxon_map=entity_taxon_map, - time=current_time) - logger.info(populated_prompt) - response = self.llm.complete( - populated_prompt + context_str = "\n\n".join( + [ + json.dumps(self.question_store[n.node.get_content()], indent=2) + for n in nodes + ] + ) + current_time = datetime.now().strftime("%Y-%m-%d %H:%M:%S") + populated_prompt = self.qa_prompt.format( + context_str=context_str, query_str=query_str, time=current_time ) + # logger.info(populated_prompt) + response = self.llm.complete(populated_prompt) + logger.info(response) return str(response) diff --git a/src/scripts/generate_query_dataset.py b/src/scripts/generate_query_dataset.py new file mode 100644 index 0000000..6aed6e4 --- /dev/null +++ b/src/scripts/generate_query_dataset.py @@ -0,0 +1,197 @@ +import itertools +import json +import urllib.parse +from datetime import datetime + +# Define the lists of entities +taxa = [ + "bat", + "cat", + "gnat", + "rat", + "spider", + "Borneo magnolia", + "mushroom", + "bird", + "rodent", + "human", + "wolf", + "fruit fly", + "Primate", + "cattle", + "fungi", + "reptile", +] +ranks = ["species", "genus", "family", "order"] +data_types = ["genome assemblies", "RNA-seq data", "sequencing platforms"] +phrases = [ + "have been sequenced", + "have genome assemblies", + "have RNA-sequencing", + "include RNA-seq data", +] +timeframes = ["this month", "recently", ""] + +# Refined prompt templates +prompts = [ + "What {rank} of {taxon} {phrase}?", + "How many {data_type} have been produced {timeframe}?", + "What is the sequencing status of the {taxon}?", + "What information do we have about {taxon}?", + "Does {taxon} {phrase}?", + "Which {rank} in the {taxon} {phrase}?", + "How many {rank} of {taxon} have {data_type}?", + "What sequencing platforms are used for {taxon} {data_type}?", + "Do any samples for {taxon} include {data_type}?", + "How many genome assemblies for {taxon} have been updated {timeframe}?", + "What are the available RNA-seq platforms for the {taxon}?", +] + + +def generate_sample_queries(): + queries = set() + for prompt, (rank, taxon, phrase, data_type, timeframe) in itertools.product( + prompts, itertools.product(ranks, taxa, phrases, data_types, timeframes) + ): + query = prompt.format( + rank=rank, + taxon=taxon, + phrase=phrase, + data_type=data_type, + timeframe=timeframe, + ).strip() + queries.add(query) + return list(queries) + + +def generate_json_output(query): + """ + Generate JSON output based on the given query. + + Parameters: + - query (str): The input query string. + + Returns: + - output (dict): The generated JSON output containing the identified entities + and intent. + + Raises: + - None. + + """ + # Define the lookup tables + lookup_tables = { + "taxon": taxa, + "rank": ranks, + "phrase": phrases, + "data_type": data_types, + "time_frame": timeframes, + } + + # Identify entities in the query + output = { + key: next((item for item in items if item in query), None) + for key, items in lookup_tables.items() + if next((item for item in items if item in query), None) + } + + # Determine the intent + if query.lower().startswith("how many"): + output["intent"] = "count" + elif query.lower().startswith("list all") or query.lower().startswith( + "find samples" + ): + output["intent"] = "search" + elif query.lower().startswith("what information do we have about"): + output["intent"] = "record" + else: + output["intent"] = "search" + + # Map phrases to fields + phrase_to_field = { + "have been sequenced": "assembly_span", + "have genome assemblies": "assembly_span", + "have RNA-sequencing": "sra_accession", + "include RNA-seq data": "sra_accession", + } + + if "phrase" in output and output["phrase"] in phrase_to_field: + output["field"] = phrase_to_field[output["phrase"]] + + if "data_type" in output: + data_type_to_field = { + "genome assemblies": "assembly_span", + "RNA-seq data": "sra_accession", + "sequencing platforms": "platform", + } + output["field"] = data_type_to_field[output["data_type"]] + + time_frame_to_query = { + "this month": "last_updated>={}".format( + datetime.now().replace(day=1).strftime("%Y-%m-%d") + ), + "recently": "last_updated>=recent", + } + + if "time_frame" in output and output["time_frame"] in time_frame_to_query: + output["time_frame_query"] = time_frame_to_query[output["time_frame"]] + + return output + + +def construct_url(json_output): + """ + Constructs a URL based on the provided JSON output. + + Parameters: + json_output (dict): A dictionary containing the JSON output. + + Returns: + str: The constructed URL. + + """ + base_url = "https://goat.genomehubs.org/" + endpoint = "search?" + suffix = "&result=taxon&summaryValues=count&taxonomy=ncbi&offset=0" + +"&fields=assembly_level%2Cassembly_span%2Cgenome_size%2C" + +"chromosome_number%2Chaploid_number&names=common_name&ranks=" + +"&includeEstimates=false&size=100" + + if json_output["intent"] == "count": + endpoint = "count?" + elif json_output["intent"] == "record": + endpoint = "record?" + + params = [] + + if "taxon" in json_output: + params.append(f"tax_tree(* {json_output['taxon']})") + if "rank" in json_output: + params.append(f"tax_rank({json_output['rank']})") + if "field" in json_output: + params.append(f"{json_output['field']}") + if "time_frame_query" in json_output: + params.append(f"{json_output['time_frame_query']}") + suffix = "&result=assembly&summaryValues=count&taxonomy=ncbi&offset=0" + +"&fields=assembly_level%2Cassembly_span%2Cgenome_size%2C" + +"chromosome_number%2Chaploid_number&names=common_name&ranks=" + +"&includeEstimates=false&size=100" + + query_string = " AND ".join(params) + return ( + base_url + endpoint + "query=" + urllib.parse.quote_plus(query_string) + suffix + ) + + +sample_queries = generate_sample_queries() +output_list = [] +for query in sample_queries: + json_output = generate_json_output(query) + url = construct_url(json_output) + output_list.append( + {"english_query": query, "json_output": json_output, "api_query": url} + ) + + +with open("sample_queries_output.json", "w") as outfile: + json.dump(output_list, outfile, indent=2) diff --git a/templates/chat.html b/src/templates/chat.html similarity index 85% rename from templates/chat.html rename to src/templates/chat.html index 6a50124..ea73611 100644 --- a/templates/chat.html +++ b/src/templates/chat.html @@ -1,5 +1,6 @@ + @@ -16,6 +17,7 @@ height: 100vh; margin: 0; } + #container { background-color: #ffffff; border-radius: 10px; @@ -27,6 +29,7 @@ flex-direction: column; height: 80vh; } + h1 { text-align: center; background-color: #324d36; @@ -34,30 +37,36 @@ margin: 0; padding: 15px 0; } + #chat_log { flex: 1; padding: 15px; overflow-y: auto; border-bottom: 1px solid #ddd; } + .message { margin-bottom: 10px; padding: 10px; border-radius: 10px; max-width: 75%; } + .user-message { background-color: #dcf8c6; align-self: flex-end; } + .bot-message { background-color: #f1f0f0; align-self: flex-start; } + #chat_form { display: flex; border-top: 1px solid #ddd; } + #user_input { flex: 1; border: none; @@ -65,9 +74,11 @@ font-size: 16px; border-radius: 0; } + #user_input:focus { outline: none; } + button[type="submit"] { background-color: #394239; color: white; @@ -77,6 +88,7 @@ font-size: 16px; border-radius: 0; } + button[type="submit"]:hover { background-color: #45a049; } @@ -94,7 +106,11 @@ }); function addMessage(sender, message) { - var messageElement = $('
').text(message); + var messageElement; + if (sender == 'bot' && message != 'Bot is typing...' && message != 'Sorry, something went wrong.' && message['json_debug']) + messageElement = $('
GoaT Link!
' + message['json_debug'] + '
'); + else + messageElement = $('
').text(message); $('#chat_log').append(messageElement); scrollToBottom(); } @@ -111,7 +127,8 @@ data: { user_input: message }, success: function (response) { $('.bot-message').last().remove(); - addMessage('bot', response.response); + console.log(response) + addMessage('bot', response); }, error: function () { $('.bot-message').last().remove(); @@ -122,12 +139,13 @@ }); +

GoaT NLP Tester

-

You are connected to LLama3, enter a query to get the API URL in the response

+

Welcome to GoaT NLP, enter any query about a species, family, genus and get its relevant GoaT URL

@@ -136,4 +154,5 @@

GoaT NLP Tester

- + + \ No newline at end of file