From 7dde9f063511e83f538c4ee0a8ff9a99d80af1bc Mon Sep 17 00:00:00 2001 From: goat Date: Sat, 12 Oct 2024 08:38:32 +0000 Subject: [PATCH] Add changes from workflow running release 2024.10.12 --- .../ncbi_datasets_eukaryota_sample.types.yaml | 2 +- sources/assembly-data-sample/ncbi_datasets_sample.types.yaml | 2 +- sources/assembly-data-taxon/cngb_taxon.types.yaml | 2 +- .../ncbi_datasets_eukaryota_taxon.types.yaml | 2 +- sources/assembly-data/cngb.types.yaml | 2 +- sources/assembly-data/ncbi_datasets_eukaryota.types.yaml | 2 +- sources/assembly-data/refseq_organelles.types.yaml | 2 +- sources/assembly-data/ucsc_ids.types.yaml | 2 +- sources/btk/btk.types.yaml | 2 +- .../FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml | 2 +- .../FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml | 2 +- sources/sra/sra.types.yaml | 2 +- sources/tolids/name | 2 +- sources/tolids/tolids.names.yaml | 2 +- 14 files changed, 14 insertions(+), 14 deletions(-) diff --git a/sources/assembly-data-sample/ncbi_datasets_eukaryota_sample.types.yaml b/sources/assembly-data-sample/ncbi_datasets_eukaryota_sample.types.yaml index 8f1f2fcd..21c11966 100644 --- a/sources/assembly-data-sample/ncbi_datasets_eukaryota_sample.types.yaml +++ b/sources/assembly-data-sample/ncbi_datasets_eukaryota_sample.types.yaml @@ -95,7 +95,7 @@ file: organelle: nucleus source: INSDC source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/ - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: assembly_id: header: genbankAssmAccession diff --git a/sources/assembly-data-sample/ncbi_datasets_sample.types.yaml b/sources/assembly-data-sample/ncbi_datasets_sample.types.yaml index f6a72783..d995564d 100644 --- a/sources/assembly-data-sample/ncbi_datasets_sample.types.yaml +++ b/sources/assembly-data-sample/ncbi_datasets_sample.types.yaml @@ -60,7 +60,7 @@ file: - TAXON_assembly.types.yaml source: INSDC source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/ - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: sample_id: header: biosampleAccession diff --git a/sources/assembly-data-taxon/cngb_taxon.types.yaml b/sources/assembly-data-taxon/cngb_taxon.types.yaml index 907dab48..8e807d21 100644 --- a/sources/assembly-data-taxon/cngb_taxon.types.yaml +++ b/sources/assembly-data-taxon/cngb_taxon.types.yaml @@ -20,7 +20,7 @@ file: header: true name: cngb.tsv organelle: nucleus - source_date: "2024-10-11" + source_date: "2024-10-12" source: CNGB source_url_stub: https://db.cngb.org/search/assembly/ identifiers: diff --git a/sources/assembly-data-taxon/ncbi_datasets_eukaryota_taxon.types.yaml b/sources/assembly-data-taxon/ncbi_datasets_eukaryota_taxon.types.yaml index afd1df35..82fd10de 100644 --- a/sources/assembly-data-taxon/ncbi_datasets_eukaryota_taxon.types.yaml +++ b/sources/assembly-data-taxon/ncbi_datasets_eukaryota_taxon.types.yaml @@ -467,7 +467,7 @@ file: organelle: nucleus source: INSDC source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/ - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: assembly_id: constraint: diff --git a/sources/assembly-data/cngb.types.yaml b/sources/assembly-data/cngb.types.yaml index 0288567e..bf95413f 100644 --- a/sources/assembly-data/cngb.types.yaml +++ b/sources/assembly-data/cngb.types.yaml @@ -17,7 +17,7 @@ file: organelle: nucleus source: CNGB source_url_stub: https://db.cngb.org/search/assembly/ - source_date: "2024-10-11" + source_date: "2024-10-12" taxonomy: taxon: header: organismName diff --git a/sources/assembly-data/ncbi_datasets_eukaryota.types.yaml b/sources/assembly-data/ncbi_datasets_eukaryota.types.yaml index 4d8a1b91..b79d9b80 100644 --- a/sources/assembly-data/ncbi_datasets_eukaryota.types.yaml +++ b/sources/assembly-data/ncbi_datasets_eukaryota.types.yaml @@ -153,7 +153,7 @@ file: - TAXON_assembly.types.yaml source: INSDC source_url_stub: https://www.ncbi.nlm.nih.gov/assembly/ - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: assembly_id: header: genbankAccession diff --git a/sources/assembly-data/refseq_organelles.types.yaml b/sources/assembly-data/refseq_organelles.types.yaml index 335efea4..dd6304c0 100644 --- a/sources/assembly-data/refseq_organelles.types.yaml +++ b/sources/assembly-data/refseq_organelles.types.yaml @@ -39,7 +39,7 @@ file: - ATTR_assembly.types.yaml source: NCBI source_url_stub: https://www.ncbi.nlm.nih.gov/nuccore/ - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: assembly_id: header: refseqAccession diff --git a/sources/assembly-data/ucsc_ids.types.yaml b/sources/assembly-data/ucsc_ids.types.yaml index f4b2915b..d8275e19 100644 --- a/sources/assembly-data/ucsc_ids.types.yaml +++ b/sources/assembly-data/ucsc_ids.types.yaml @@ -3,7 +3,7 @@ file: format: tsv header: false name: UCSC_GI.assemblyHubList.tsv.gz - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: assembly_id: index: 0 diff --git a/sources/btk/btk.types.yaml b/sources/btk/btk.types.yaml index f087a72a..beef74ed 100644 --- a/sources/btk/btk.types.yaml +++ b/sources/btk/btk.types.yaml @@ -21,7 +21,7 @@ file: - ATTR_assembly.types.yaml - ATTR_btk.types.yaml - TAXON_assembly.types.yaml - source_date: "2024-10-11" + source_date: "2024-10-12" identifiers: assembly_alias: header: alias diff --git a/sources/genomesize-karyotype/FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml b/sources/genomesize-karyotype/FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml index 4ab5c2b8..a34f054e 100644 --- a/sources/genomesize-karyotype/FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml +++ b/sources/genomesize-karyotype/FILE_DTOL_Plant_Genome_Size_Estimates.types.yaml @@ -3,7 +3,7 @@ file: header: true name: DTOL_Plant_Genome_Size_Estimates.tsv source: DTOL Plant Genome Estimates Kew - source_date: "2024-10-11" + source_date: "2024-10-12" attributes: genome_size: type: long diff --git a/sources/genomesize-karyotype/FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml b/sources/genomesize-karyotype/FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml index bf53698c..d1fb4e67 100644 --- a/sources/genomesize-karyotype/FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml +++ b/sources/genomesize-karyotype/FILE_DTOL_assembly_informatics_status_kmer_draft.types.yaml @@ -3,7 +3,7 @@ file: header: true name: DTOL_assembly_informatics_status_kmer_draft.tsv source: Darwin Tree of Life Assembly Team - source_date: "2024-10-11" + source_date: "2024-10-12" source_url: https://qc.tol.sanger.ac.uk/ attributes: genome_size_kmer: diff --git a/sources/sra/sra.types.yaml b/sources/sra/sra.types.yaml index 236db1a3..01a55d3a 100644 --- a/sources/sra/sra.types.yaml +++ b/sources/sra/sra.types.yaml @@ -24,7 +24,7 @@ file: name: sra.tsv needs: - ATTR_sra.types.yaml - source_date: "2024-10-11" + source_date: "2024-10-12" taxonomy: taxon_id: header: taxon_id diff --git a/sources/tolids/name b/sources/tolids/name index 29cf2dc5..c4a33017 100644 --- a/sources/tolids/name +++ b/sources/tolids/name @@ -1,2 +1,2 @@ file: - source_date: "2024-10-11" + source_date: "2024-10-12" diff --git a/sources/tolids/tolids.names.yaml b/sources/tolids/tolids.names.yaml index 876d8cb6..e00eab75 100644 --- a/sources/tolids/tolids.names.yaml +++ b/sources/tolids/tolids.names.yaml @@ -4,7 +4,7 @@ file: name: tolids.tsv.gz source: dToL sample naming source_url: https://id.tol.sanger.ac.uk/ - source_date: "2024-10-11" + source_date: "2024-10-12" taxon_names: tolid_prefix: index: 0