-
Notifications
You must be signed in to change notification settings - Fork 0
115 lines (106 loc) · 3.61 KB
/
s3_release.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
name: s3_release
on:
workflow_dispatch:
schedule:
- cron: "5 0 * * 1,2,3,4,5,6" # At 00:05 every MTWTFS
env:
DOCKERVERSION: latest
TAXROOT: '["2759"]'
RESOURCES: /home/ubuntu/resources
jobs:
set-variables:
runs-on: ubuntu-latest
outputs:
dockerversion: ${{ steps.dockerversion.outputs.dockerversion }}
release: ${{ steps.release.outputs.release }}
resources: ${{ steps.resources.outputs.resources }}
taxroot: ${{ steps.taxroot.outputs.taxroot }}
steps:
- id: dockerversion
run: |
echo "dockerversion=$DOCKERVERSION" >> $GITHUB_OUTPUT
- id: release
run: |
echo "release=$(date +'%Y.%m.%d')" >> $GITHUB_OUTPUT
- id: resources
run: |
echo "resources=$RESOURCES" >> $GITHUB_OUTPUT
- id: taxroot
run: |
echo "taxroot=$TAXROOT" >> $GITHUB_OUTPUT
fetch-dockers:
runs-on: [self-hosted, runner2]
steps:
- name: Get dockers
run: |
docker system prune -f
docker pull genomehubs/genomehubs:$DOCKERVERSION
docker pull genomehubs/genomehubs-test:$DOCKERVERSION
docker run --rm genomehubs/genomehubs sh -c 'echo $CONTAINER_VERSION'
fetch-resources:
needs:
- set-variables
- fetch-dockers
uses: ./.github/workflows/fetch-resources.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
resources: ${{ needs.set-variables.outputs.resources }}
taxroot: ${{ needs.set-variables.outputs.taxroot }}
secrets:
JGI_OFFLINE_TOKEN: ${{ secrets.JGI_OFFLINE_TOKEN }}
ORIGINAL2_5_SCHEMA: ${{ secrets.ORIGINAL2_5_SCHEMA }}
STS_AUTHORIZATION_KEY: ${{ secrets.STS_AUTHORIZATION_KEY }}
init-release:
needs:
- set-variables
- fetch-resources
uses: ./.github/workflows/genomehubs-init.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
release: ${{ needs.set-variables.outputs.release }}
resources: ${{ needs.set-variables.outputs.resources }}
index-directories:
needs:
- set-variables
- init-release
uses: ./.github/workflows/genomehubs-index.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
release: ${{ needs.set-variables.outputs.release }}
resources: ${{ needs.set-variables.outputs.resources }}
index-files:
needs:
- set-variables
- init-release
uses: ./.github/workflows/genomehubs-index-files.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
release: ${{ needs.set-variables.outputs.release }}
resources: ${{ needs.set-variables.outputs.resources }}
fill-values:
needs:
- set-variables
- index-directories
uses: ./.github/workflows/genomehubs-fill.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
release: ${{ needs.set-variables.outputs.release }}
resources: ${{ needs.set-variables.outputs.resources }}
run-tests:
needs:
- set-variables
- fill-values
uses: ./.github/workflows/genomehubs-test.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
release: ${{ needs.set-variables.outputs.release }}
resources: ${{ needs.set-variables.outputs.resources }}
finish-release:
needs:
- set-variables
- run-tests
uses: ./.github/workflows/finish-release.yml
with:
dockerversion: ${{ needs.set-variables.outputs.dockerversion }}
release: ${{ needs.set-variables.outputs.release }}
resources: ${{ needs.set-variables.outputs.resources }}