Skip to content
This repository has been archived by the owner on Jan 31, 2020. It is now read-only.

Issues: genome/pindel

71 Open 14 Closed
71 Open 14 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

how to get allele frequencies with Pindel?
#117 opened Dec 20, 2019 by myourshaw
pindel fails with error while loading shared libraries: libhts.so.3
#116 opened Dec 19, 2019 by myourshaw
1
Installing Pindel keeps failing because of htslib
#115 opened Dec 2, 2019 by claudiadast
1
NTLEN definition in pindel2vcf4tcga output
#114 opened Nov 13, 2019 by abolia
Clarification on running pindel on individual samples
#113 opened Oct 15, 2019 by ashokrags
Large TDs spanning the window size lose supporting reads
#112 opened Oct 2, 2019 by RobinVanSchendel
Problems in installing pindel
#111 opened Aug 29, 2019 by thejadeR
2
CRAM index support
#110 opened Jul 8, 2019 by neilgoodgame
Duplicate entries in Pindel output
#109 opened Jul 5, 2019 by stevekm
Where can i find the demo results?
#108 opened Jul 4, 2019 by CapitanFlint
Long runtime
#107 opened Jul 1, 2019 by David-Flurin
How does pindel detect large insert
#105 opened Apr 22, 2019 by liufy11
strategies used by pindel to detect variants
#104 opened Mar 5, 2019 by Jordi-V
Question about speed
#103 opened Jan 16, 2019 by tiplud
Confusion about documentation about parameter -c
#100 opened Sep 17, 2018 by SHuang-Broad
1
Building pindel with g++-7.3.0 fails
#99 opened Sep 17, 2018 by SHuang-Broad
9
pindel install fail
#98 opened Sep 7, 2018 by wang-xilu
6
Pindel understimates AF
#97 opened Aug 22, 2018 by erfan1985
The output format of pindel
#96 opened Aug 1, 2018 by zhangnan0107
wrong VAF estimation of pindel
#95 opened Jul 10, 2018 by jinxinhao0627
2
Error in compiling from master -- pindel.cpp:1557:127: error: call of overloaded ‘abs(unsigned int)’ is ambiguous
#87 opened Mar 21, 2018 by eroberson
3
Possible enhancement for VAF estimation
#86 opened Mar 21, 2018 by philip-holmgren
Cram file support?
#85 opened Feb 26, 2018 by jjfarrell
1
Build error with gcc 6, 7
#83 opened Feb 13, 2018 by jgarthur
Insert size must be an integer
#81 opened Jan 4, 2018 by dariober
1
ProTip! Exclude everything labeled bug with -label:bug.