diff --git a/DESCRIPTION b/DESCRIPTION index 9a38c90..5cb0701 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: projectR Type: Package Title: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering -Version: 1.19.2 +Version: 1.19.3 Author: Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff, Genevieve Stein-O'Brien Authors@R: c( person("Gaurav", "Sharma", role = c("aut")), @@ -15,6 +15,7 @@ Authors@R: c( Description: Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering. License: GPL (==2) Imports: + SingleCellExperiment, methods, cluster, stats, @@ -50,7 +51,7 @@ Suggests: SeuratObject LazyData: TRUE LazyDataCompression: gzip -RoxygenNote: 7.3.1 +RoxygenNote: 7.3.2 Encoding: UTF-8 VignetteBuilder: knitr biocViews: FunctionalPrediction, GeneRegulation, BiologicalQuestion, Software diff --git a/NAMESPACE b/NAMESPACE index 273c371..5ffadf6 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -21,6 +21,7 @@ exportClasses(correlateR) exportClasses(rotatoR) import(MatrixModels) import(RColorBrewer) +import(SingleCellExperiment) import(cluster) import(dplyr) import(fgsea) diff --git a/R/projectR.R b/R/projectR.R index 137f403..38b87e2 100644 --- a/R/projectR.R +++ b/R/projectR.R @@ -135,6 +135,7 @@ setMethod("projectR",signature(data="dgCMatrix",loadings="matrix"),function( ####################################################################################################################################### #' @import limma +#' @import SingleCellExperiment #' @importFrom NMF fcnnls #' @examples #' library("CoGAPS") diff --git a/README.md b/README.md index 6a6d248..93bb158 100644 --- a/README.md +++ b/README.md @@ -18,4 +18,4 @@ BiocManager::install("projectR") BiocManager::install("genesofeve/projectR") ``` ## Getting Started -We recommend going through the [vignette](https://www.bioconductor.org/packages/release/bioc/vignettes/projectR/inst/doc/projectR.pdf) and the [Bioinformatics article](https://academic.oup.com/bioinformatics/article/36/11/3592/5804979) to learn more about **projectR**. +We recommend going through the [vignette](https://www.bioconductor.org/packages/release/bioc/vignettes/projectR/inst/doc/projectR.html) and the [Bioinformatics article](https://academic.oup.com/bioinformatics/article/36/11/3592/5804979) to learn more about **projectR**.