From 55167e0c91efd9e4191e271d7e05e09a53ecd7ac Mon Sep 17 00:00:00 2001
From: rpalaganas <ryanpalaganas96@gmail.com>
Date: Fri, 16 Feb 2024 13:57:42 -0500
Subject: [PATCH] Update plotting.R
---
R/plotting.R | 18 +++++++++++-------
1 file changed, 11 insertions(+), 7 deletions(-)
diff --git a/R/plotting.R b/R/plotting.R
index 8258343..763dea9 100644
--- a/R/plotting.R
+++ b/R/plotting.R
@@ -213,13 +213,17 @@ plotVolcano <- function(
#' @return A list with weighted and unweighted differential expression metrics
#' @export
#plot FC, weighted and unweighted. Designed for use with the output of projectionDriveRs
-pdVolcano <- function(result,
- FC = 0.2,
- pvalue = NULL,
- subset = NULL,
- filter.inf = FALSE,
- label.num = 5L,
- display = TRUE) {
+pdVolcano <- function(
+ result,
+ FC = 0.2,
+ pvalue = NULL,
+ subset = NULL,
+ filter.inf = FALSE,
+ label.num = 5L,
+ display = TRUE) {
+
+ #bind local variables
+ welch_padj <- Color <- NULL
#if a genelist is provided, use them to subset the output of projectiondrivers
if (!is.null(subset)) {
#subset the mean_stats object by provided gene list