From 6ed1c66d35ca7c4369503b12089a002fecae78f6 Mon Sep 17 00:00:00 2001 From: Edith Wong Date: Mon, 7 Oct 2024 11:59:19 -0700 Subject: [PATCH 1/2] obsolete GO:0044255, GO:0097384, GO:0044242; Fixes #28975 --- src/ontology/go-edit.obo | 30 ++++++++++++++++++------------ 1 file changed, 18 insertions(+), 12 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index c27766e6d2..f1ef9c4722 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -255851,15 +255851,17 @@ is_a: GO:0007586 ! digestion [Term] id: GO:0044242 -name: cellular lipid catabolic process +name: obsolete cellular lipid catabolic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells." [GOC:jl] +def: "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells." [GOC:jl] +comment: The reason for obsoletion is that this terms is redundant with GO:0016042 synonym: "cellular lipid breakdown" EXACT [] synonym: "cellular lipid catabolism" EXACT [] synonym: "cellular lipid degradation" EXACT [] -is_a: GO:0016042 ! lipid catabolic process -is_a: GO:0044255 ! cellular lipid metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28975" xsd:anyURI +is_obsolete: true +replaced_by: GO:0016042 [Term] id: GO:0044245 @@ -255933,13 +255935,15 @@ consider: GO:0030163 [Term] id: GO:0044255 -name: cellular lipid metabolic process +name: obsolete cellular lipid metabolic process namespace: biological_process -def: "The chemical reactions and pathways involving lipids, as carried out by individual cells." [GOC:jl] +def: "OBSOLETE. The chemical reactions and pathways involving lipids, as carried out by individual cells." [GOC:jl] +comment: The reason for obsoletion is that this term is redundant to GO:0006629 subset: goslim_pir synonym: "cellular lipid metabolism" EXACT [] -is_a: GO:0006629 ! lipid metabolic process -is_a: GO:0008152 ! metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28975" xsd:anyURI +is_obsolete: true +replaced_by: GO:0006629 [Term] id: GO:0044256 @@ -415540,15 +415544,17 @@ creation_date: 2012-10-11T16:04:40Z [Term] id: GO:0097384 -name: cellular lipid biosynthetic process +name: obsolete cellular lipid biosynthetic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of lipids, as carried out by individual cells." [GOC:pr] +def: "OBSOLETE. The chemical reactions and pathways resulting in the formation of lipids, as carried out by individual cells." [GOC:pr] +comment: The reason for obsoletion is that this term is redundant to GO:008610 synonym: "cellular lipid anabolism" EXACT [] synonym: "cellular lipid biosynthesis" EXACT [] synonym: "cellular lipid formation" EXACT [] synonym: "cellular lipid synthesis" EXACT [] -is_a: GO:0008610 ! lipid biosynthetic process -is_a: GO:0044255 ! cellular lipid metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28975" xsd:anyURI +is_obsolete: true +replaced_by: GO:0008610 created_by: pr creation_date: 2012-10-16T16:47:09Z From 431941698ba3ea3abf55ca2d945bdf7bfaf2e672 Mon Sep 17 00:00:00 2001 From: Edith Wong Date: Mon, 7 Oct 2024 12:31:42 -0700 Subject: [PATCH 2/2] obsolete GO:0044255, GO:0097384, GO:0044242; Fixes #28975 --- src/ontology/go-edit.obo | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index f1ef9c4722..5d57396d46 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -255939,7 +255939,6 @@ name: obsolete cellular lipid metabolic process namespace: biological_process def: "OBSOLETE. The chemical reactions and pathways involving lipids, as carried out by individual cells." [GOC:jl] comment: The reason for obsoletion is that this term is redundant to GO:0006629 -subset: goslim_pir synonym: "cellular lipid metabolism" EXACT [] property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28975" xsd:anyURI is_obsolete: true