diff --git a/src/ontology/imports/oba_import.obo b/src/ontology/imports/oba_import.obo index f7dea65e8c..49a2f9c112 100644 --- a/src/ontology/imports/oba_import.obo +++ b/src/ontology/imports/oba_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: go/releases/2017-04-25/imports/oba_import.owl +data-version: go/releases/2019-07-03/imports/oba_import.owl ontology: go/imports/oba_import [Term] @@ -20,8 +20,6 @@ name: Malpighian tubule size def: "The size of a Malpighian tubule." [] synonym: "size of Malpighian tubule" EXACT [] is_a: OBA:0000172 ! tube size -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000777 ! urinary system trait [Term] id: OBA:0000009 @@ -50,9 +48,6 @@ name: angiotensin levels in blood def: "The amount of a angiotensin II when measured in blood." [] synonym: "blood angiotensin II amount" EXACT [] is_a: OBA:0000079 ! hormone levels -is_a: OBA:VT0010248 ! hemolymphoid system trait -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000784 ! circulatory system trait [Term] id: OBA:0000018 @@ -88,8 +83,8 @@ is_a: OBA:VT0001614 ! blood vessel morphology trait id: OBA:0000036 name: body fluid levels def: "The volume when measured in multicellular organism." [] -is_a: OBA:0000001 ! biological attribute -is_a: OBA:VT0010454 ! organism trait +synonym: "multicellular organism volume" EXACT [] +is_a: OBA:VT0100005 ! body size trait [Term] id: OBA:0000037 @@ -115,8 +110,6 @@ def: "The membrane potential of a cardiac muscle cell." [] synonym: "membrane potential of cardiac muscle cell" EXACT [] is_a: OBA:0000099 ! membrane potential is_a: OBA:1000076 ! attribute of cell -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000784 ! circulatory system trait [Term] id: OBA:0000048 @@ -130,7 +123,7 @@ id: OBA:0000050 name: cell pH def: "The pH of a cell." [] synonym: "pH of cell" EXACT [] -is_a: OBA:0000058 ! cellular pH +is_a: OBA:0000121 ! pH is_a: OBA:1000076 ! attribute of cell [Term] @@ -174,7 +167,9 @@ is_a: OBA:0100001 ! cellular component attribute id: OBA:0000058 name: cellular pH def: "The acidity when measured in cell." [] +synonym: "cell acidity" EXACT [] is_a: OBA:0000121 ! pH +is_a: OBA:1000076 ! attribute of cell [Term] id: OBA:0000061 @@ -213,7 +208,6 @@ def: "The microvillus length of a follicle cell." [] synonym: "microvillus length of follicle cell" EXACT [] is_a: OBA:0000055 ! cell size is_a: OBA:0000102 ! microvillus length -is_a: OBA:VT0010454 ! organism trait [Term] id: OBA:0000074 @@ -255,13 +249,14 @@ name: lung blood pressure def: "The pressure of a blood when measured in lung." [] synonym: "lung blood pressure" EXACT [] is_a: OBA:VT0000183 ! blood pressure trait -is_a: OBA:VT0005388 ! respiratory system trait [Term] id: OBA:0000091 name: lysosomal lumen pH def: "The acidity when measured in lysosomal lumen." [] +synonym: "lysosomal lumen acidity" EXACT [] is_a: OBA:0000050 ! cell pH +is_a: OBA:0000058 ! cellular pH [Term] id: OBA:0000092 @@ -370,8 +365,6 @@ def: "The synaptic plasticity of a neuron." [] synonym: "synaptic plasticity of neuron" EXACT [] is_a: OBA:0000141 ! synaptic plasticity is_a: OBA:1000076 ! attribute of cell -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000781 ! nervous/sensory system trait [Term] id: OBA:0000116 @@ -561,7 +554,6 @@ name: urinary volume def: "The volume of a urine." [] synonym: "volume of urine" EXACT [] is_a: OBA:0000036 ! body fluid levels -is_a: OBA:0100003 ! anatomical entity attribute is_a: OBA:VT0000056 ! urine trait [Term] @@ -751,8 +743,6 @@ name: lens of camera-type eye quality def: "The quality of a lens of camera-type eye." [] synonym: "quality of lens of camera-type eye" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT0015074 ! organ system trait [Term] id: OBA:1001065 @@ -765,6 +755,8 @@ is_a: OBA:1000076 ! attribute of cell id: OBA:VT0000056 name: urine trait def: "The quality when measured in urine." [] +synonym: "urine quality" EXACT [] +is_a: OBA:0100003 ! anatomical entity attribute [Term] id: OBA:VT0000183 @@ -772,9 +764,6 @@ name: blood pressure trait def: "The pressure of a blood." [] synonym: "pressure of blood" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute -is_a: OBA:VT0010248 ! hemolymphoid system trait -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000784 ! circulatory system trait [Term] id: OBA:VT0000832 @@ -782,8 +771,6 @@ name: thalamus morphology trait def: "The morphology of a dorsal plus ventral thalamus." [] synonym: "morphology of dorsal plus ventral thalamus" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000781 ! nervous/sensory system trait [Term] id: OBA:VT0001614 @@ -791,8 +778,6 @@ name: blood vessel morphology trait def: "The morphology of a blood vessel." [] synonym: "morphology of blood vessel" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000784 ! circulatory system trait [Term] id: OBA:VT0002121 @@ -807,8 +792,6 @@ name: kidney morphology trait def: "The morphology of a kidney." [] synonym: "morphology of kidney" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute -is_a: OBA:VT0010454 ! organism trait -is_a: OBA:VT1000777 ! urinary system trait [Term] id: OBA:VT0002706 @@ -824,14 +807,6 @@ name: respiratory conducting tube morphology trait def: "The morphology of a respiratory tube." [] synonym: "morphology of respiratory tube" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute -is_a: OBA:VT0005388 ! respiratory system trait -is_a: OBA:VT0010454 ! organism trait - -[Term] -id: OBA:VT0005388 -name: respiratory system trait -def: "The quality when measured in respiratory system." [] -is_a: OBA:VT0015074 ! organ system trait [Term] id: OBA:VT0005404 @@ -840,16 +815,12 @@ def: "The morphology of a axon." [] synonym: "morphology of axon" EXACT [] is_a: OBA:VT0015108 ! neurite morphology trait -[Term] -id: OBA:VT0010248 -name: hemolymphoid system trait -def: "The quality when measured in hemolymphoid system." [] -is_a: OBA:VT0015074 ! organ system trait - [Term] id: OBA:VT0010454 name: organism trait def: "The quality when measured in multicellular organism." [] +synonym: "multicellular organism quality" EXACT [] +is_a: OBA:0100003 ! anatomical entity attribute [Term] id: OBA:VT0015071 @@ -858,11 +829,6 @@ def: "The morphology of a appendage." [] synonym: "morphology of appendage" EXACT [] is_a: OBA:1000099 ! appendage trait -[Term] -id: OBA:VT0015074 -name: organ system trait -def: "The quality when measured in anatomical system." [] - [Term] id: OBA:VT0015108 name: neurite morphology trait @@ -876,6 +842,13 @@ name: organism subdivision trait def: "The quality of a organism subdivision." [] synonym: "quality of organism subdivision" EXACT [] is_a: OBA:0100003 ! anatomical entity attribute + +[Term] +id: OBA:VT0100005 +name: body size trait +def: "The size of a multicellular organism." [] +synonym: "size of multicellular organism" EXACT [] +is_a: OBA:0000015 ! anatomical structure size is_a: OBA:VT0010454 ! organism trait [Term] @@ -885,24 +858,6 @@ def: "The quality of a growth." [] synonym: "quality of growth" EXACT [] is_a: OBA:0100002 ! biological process attribute -[Term] -id: OBA:VT1000777 -name: urinary system trait -def: "The quality when measured in renal system." [] -is_a: OBA:VT0015074 ! organ system trait - -[Term] -id: OBA:VT1000781 -name: nervous/sensory system trait -def: "The quality when measured in nervous system." [] -is_a: OBA:VT0015074 ! organ system trait - -[Term] -id: OBA:VT1000784 -name: circulatory system trait -def: "The quality when measured in circulatory system." [] -is_a: OBA:VT0015074 ! organ system trait - [Term] id: OBA:VT2000000 name: arterial blood pressure trait diff --git a/src/ontology/imports/oba_import.owl b/src/ontology/imports/oba_import.owl index 7d9e57d798..fc47770411 100644 --- a/src/ontology/imports/oba_import.owl +++ b/src/ontology/imports/oba_import.owl @@ -1,15 +1,15 @@ + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -27,25 +27,107 @@ - + + definition + + + + + + + + + + + + + + + + + + + - + + has_broad_synonym + + + + + + + + database_cross_reference + - + + has_exact_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + - + + has_related_synonym + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + @@ -84,8 +166,6 @@ - - The size of a Malpighian tubule. size of Malpighian tubule Malpighian tubule size @@ -130,9 +210,6 @@ - - - The amount of a angiotensin II when measured in blood. blood angiotensin II amount angiotensin levels in blood @@ -189,9 +266,9 @@ - - + The volume when measured in multicellular organism. + multicellular organism volume body fluid levels @@ -231,8 +308,6 @@ - - The membrane potential of a cardiac muscle cell. membrane potential of cardiac muscle cell cardiac muscle cell membrane potential @@ -254,7 +329,7 @@ - + The pH of a cell. pH of cell @@ -324,7 +399,9 @@ + The acidity when measured in cell. + cell acidity cellular pH @@ -381,7 +458,6 @@ - The microvillus length of a follicle cell. microvillus length of follicle cell follicle cell microvillus length @@ -447,7 +523,6 @@ - The pressure of a blood when measured in lung. lung blood pressure lung blood pressure @@ -459,7 +534,9 @@ + The acidity when measured in lysosomal lumen. + lysosomal lumen acidity lysosomal lumen pH @@ -626,8 +703,6 @@ - - The synaptic plasticity of a neuron. synaptic plasticity of neuron neuronal synaptic plasticity @@ -925,7 +1000,6 @@ - The volume of a urine. volume of urine @@ -1215,8 +1289,6 @@ - - The quality of a lens of camera-type eye. quality of lens of camera-type eye lens of camera-type eye quality @@ -1238,7 +1310,9 @@ + The quality when measured in urine. + urine quality urine trait @@ -1248,9 +1322,6 @@ - - - The pressure of a blood. pressure of blood blood pressure trait @@ -1262,8 +1333,6 @@ - - The morphology of a dorsal plus ventral thalamus. morphology of dorsal plus ventral thalamus thalamus morphology trait @@ -1275,8 +1344,6 @@ - - The morphology of a blood vessel. morphology of blood vessel blood vessel morphology trait @@ -1299,8 +1366,6 @@ - - The morphology of a kidney. morphology of kidney kidney morphology trait @@ -1324,8 +1389,6 @@ - - The morphology of a respiratory tube. morphology of respiratory tube respiratory conducting tube morphology trait @@ -1333,16 +1396,6 @@ - - - - - The quality when measured in respiratory system. - respiratory system trait - - - - @@ -1354,20 +1407,12 @@ - - - - - The quality when measured in hemolymphoid system. - hemolymphoid system trait - - - - + The quality when measured in multicellular organism. + multicellular organism quality organism trait @@ -1384,15 +1429,6 @@ - - - - The quality when measured in anatomical system. - organ system trait - - - - @@ -1408,7 +1444,6 @@ - The quality of a organism subdivision. quality of organism subdivision organism subdivision trait @@ -1416,6 +1451,18 @@ + + + + + + The size of a multicellular organism. + size of multicellular organism + body size trait + + + + @@ -1427,36 +1474,6 @@ - - - - - The quality when measured in renal system. - urinary system trait - - - - - - - - - The quality when measured in nervous system. - nervous/sensory system trait - - - - - - - - - The quality when measured in circulatory system. - circulatory system trait - - - - @@ -1469,5 +1486,5 @@ - +