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consistency issues (phosphatidylinositol) #29055

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ValWood opened this issue Oct 11, 2024 · 5 comments
Open

consistency issues (phosphatidylinositol) #29055

ValWood opened this issue Oct 11, 2024 · 5 comments

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@ValWood
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ValWood commented Oct 11, 2024

Term names use variously:
phosphatidylinositol-3-phosphate synthesis
phosphatidylinositol 5-phosphate synthesis

and
1-phosphatidyl-1D-myo-inositol
or
phosphatidylinositol

@pgaudet @deustp01 @rozaru @sjm41

@ValWood
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ValWood commented Oct 11, 2024

Rhea uses 1-phosphatidyl-1D-myo-inositol but in practice everyone uses "phosphatidylinositol"
(at lease for the terms I looked at)

Chebi seem inconsistent

Since we are supposed to use the most commonly used by the community should we use phosphatidylinositol

@ValWood
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ValWood commented Oct 14, 2024

was from this comment,
#28898 (comment)

@pgaudet
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pgaudet commented Oct 14, 2024

Since we are supposed to use the most commonly used by the community should we use phosphatidylinositol

Are you talking about term names or definitions?

For term names >>> absolutely
For definitions: we have been copying RHEA definitions, for consistency, but that may not be complete.

@ValWood
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ValWood commented Oct 14, 2024

For the names.

@ValWood
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ValWood commented Oct 14, 2024

so do we prefer phosphatidylinositol in the labels?

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