diff --git a/docs/patterns/multi_organism_process.md b/docs/patterns/multi_organism_process.md index 67d62e1692..37b47b04a9 100644 --- a/docs/patterns/multi_organism_process.md +++ b/docs/patterns/multi_organism_process.md @@ -29,7 +29,7 @@ TODO ## Equivalent to -`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486)) +`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486)) diff --git a/docs/patterns/protein_complex_by_activity.md b/docs/patterns/protein_complex_by_activity.md index 92888d3269..85be12daf1 100644 --- a/docs/patterns/protein_complex_by_activity.md +++ b/docs/patterns/protein_complex_by_activity.md @@ -29,7 +29,7 @@ TODO ## Equivalent to -[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`) +[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`) diff --git a/docs/patterns/single_organism_process.md b/docs/patterns/single_organism_process.md index d8076858a2..61a527175e 100644 --- a/docs/patterns/single_organism_process.md +++ b/docs/patterns/single_organism_process.md @@ -29,7 +29,7 @@ TODO ## Equivalent to -`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487)) +`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487)) diff --git a/src/design_patterns/negative_regulation.tsv b/src/design_patterns/negative_regulation.tsv index eb5a1d4475..9d18eb1194 100644 --- a/src/design_patterns/negative_regulation.tsv +++ b/src/design_patterns/negative_regulation.tsv @@ -647,7 +647,6 @@ http://purl.obolibrary.org/obo/GO_2000937 negative regulation of cellotriose cat http://purl.obolibrary.org/obo/GO_2000934 negative regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900286 negative regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031327 negative regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031330 negative regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0051129 negative regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0051245 negative regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0006968 cellular defense response http://purl.obolibrary.org/obo/GO_0002692 negative regulation of cellular extravasation http://purl.obolibrary.org/obo/GO_0045123 cellular extravasation diff --git a/src/design_patterns/positive_regulation.tsv b/src/design_patterns/positive_regulation.tsv index 18e5968d50..51052cdc0b 100644 --- a/src/design_patterns/positive_regulation.tsv +++ b/src/design_patterns/positive_regulation.tsv @@ -649,7 +649,6 @@ http://purl.obolibrary.org/obo/GO_2000938 positive regulation of cellotriose cat http://purl.obolibrary.org/obo/GO_2000935 positive regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900287 positive regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031328 positive regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031331 positive regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0044089 positive regulation of cellular component biogenesis http://purl.obolibrary.org/obo/GO_0044085 cellular component biogenesis http://purl.obolibrary.org/obo/GO_0051130 positive regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0010186 positive regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0006968 cellular defense response diff --git a/src/design_patterns/regulation.tsv b/src/design_patterns/regulation.tsv index 2b3789f770..6788036845 100644 --- a/src/design_patterns/regulation.tsv +++ b/src/design_patterns/regulation.tsv @@ -748,7 +748,6 @@ http://purl.obolibrary.org/obo/GO_2000936 regulation of cellotriose catabolic pr http://purl.obolibrary.org/obo/GO_2000933 regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900285 regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031326 regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031329 regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0044087 regulation of cellular component biogenesis http://purl.obolibrary.org/obo/GO_0044085 cellular component biogenesis http://purl.obolibrary.org/obo/GO_0051128 regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0010185 regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0006968 cellular defense response diff --git a/src/design_patterns/regulation_by.tsv b/src/design_patterns/regulation_by.tsv index b6186ae213..68a4633dd9 100644 --- a/src/design_patterns/regulation_by.tsv +++ b/src/design_patterns/regulation_by.tsv @@ -694,7 +694,6 @@ http://purl.obolibrary.org/obo/GO_2000936 regulation of cellotriose catabolic pr http://purl.obolibrary.org/obo/GO_2000933 regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900285 regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031326 regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031329 regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0044087 regulation of cellular component biogenesis http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0044085 cellular component biogenesis http://purl.obolibrary.org/obo/GO_0051128 regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0010185 regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0006968 cellular defense response diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl index af0cdea41b..a372797be7 100644 --- a/src/ontology/imports/go-pattern-conformance.ttl +++ b/src/ontology/imports/go-pattern-conformance.ttl @@ -13935,16 +13935,6 @@ . - , - . - - - . - - - . - - .