diff --git a/docs/patterns/involved_in_x_y.md b/docs/patterns/involved_in_x_y.md index 6b3843a552..b75c800606 100644 --- a/docs/patterns/involved_in_x_y.md +++ b/docs/patterns/involved_in_x_y.md @@ -30,7 +30,7 @@ TODO ## Equivalent to -`{process1}` and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some `{process2}`) +`{process1}` and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some `{process2}`) diff --git a/docs/patterns/membrane_region.md b/docs/patterns/membrane_region.md index 841c327ee6..794d3f54a3 100644 --- a/docs/patterns/membrane_region.md +++ b/docs/patterns/membrane_region.md @@ -34,7 +34,7 @@ TODO ## Subclass of -[membrane](http://purl.obolibrary.org/obo/GO_0016020) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some `{encompassing_membrane}`) and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some `{intersecting_region}`) +[membrane](http://purl.obolibrary.org/obo/GO_0016020) and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some `{encompassing_membrane}`) and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some `{intersecting_region}`) diff --git a/docs/patterns/part_of_cell_component.md b/docs/patterns/part_of_cell_component.md index 33b94d810f..4ffc3058e5 100644 --- a/docs/patterns/part_of_cell_component.md +++ b/docs/patterns/part_of_cell_component.md @@ -30,7 +30,7 @@ TODO ## Equivalent to -`{component1}` and ([part_of](http://purl.obolibrary.org/obo/BFO_0000050) some `{component2}`) +`{component1}` and ([part of](http://purl.obolibrary.org/obo/BFO_0000050) some `{component2}`) diff --git a/src/design_patterns/negative_regulation.tsv b/src/design_patterns/negative_regulation.tsv index eb5a1d4475..9d18eb1194 100644 --- a/src/design_patterns/negative_regulation.tsv +++ b/src/design_patterns/negative_regulation.tsv @@ -647,7 +647,6 @@ http://purl.obolibrary.org/obo/GO_2000937 negative regulation of cellotriose cat http://purl.obolibrary.org/obo/GO_2000934 negative regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900286 negative regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031327 negative regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031330 negative regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0051129 negative regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0051245 negative regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0006968 cellular defense response http://purl.obolibrary.org/obo/GO_0002692 negative regulation of cellular extravasation http://purl.obolibrary.org/obo/GO_0045123 cellular extravasation diff --git a/src/design_patterns/positive_regulation.tsv b/src/design_patterns/positive_regulation.tsv index 18e5968d50..51052cdc0b 100644 --- a/src/design_patterns/positive_regulation.tsv +++ b/src/design_patterns/positive_regulation.tsv @@ -649,7 +649,6 @@ http://purl.obolibrary.org/obo/GO_2000938 positive regulation of cellotriose cat http://purl.obolibrary.org/obo/GO_2000935 positive regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900287 positive regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031328 positive regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031331 positive regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0044089 positive regulation of cellular component biogenesis http://purl.obolibrary.org/obo/GO_0044085 cellular component biogenesis http://purl.obolibrary.org/obo/GO_0051130 positive regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0010186 positive regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0006968 cellular defense response diff --git a/src/design_patterns/regulation.tsv b/src/design_patterns/regulation.tsv index 2b3789f770..6788036845 100644 --- a/src/design_patterns/regulation.tsv +++ b/src/design_patterns/regulation.tsv @@ -748,7 +748,6 @@ http://purl.obolibrary.org/obo/GO_2000936 regulation of cellotriose catabolic pr http://purl.obolibrary.org/obo/GO_2000933 regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900285 regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031326 regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031329 regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0044087 regulation of cellular component biogenesis http://purl.obolibrary.org/obo/GO_0044085 cellular component biogenesis http://purl.obolibrary.org/obo/GO_0051128 regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0010185 regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0006968 cellular defense response diff --git a/src/design_patterns/regulation_by.tsv b/src/design_patterns/regulation_by.tsv index b6186ae213..68a4633dd9 100644 --- a/src/design_patterns/regulation_by.tsv +++ b/src/design_patterns/regulation_by.tsv @@ -694,7 +694,6 @@ http://purl.obolibrary.org/obo/GO_2000936 regulation of cellotriose catabolic pr http://purl.obolibrary.org/obo/GO_2000933 regulation of cellotriose metabolic process http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_2000893 cellotriose metabolic process http://purl.obolibrary.org/obo/GO_1900285 regulation of cellotriose transport http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_2001096 cellotriose transport http://purl.obolibrary.org/obo/GO_0031326 regulation of cellular biosynthetic process http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0044249 cellular biosynthetic process -http://purl.obolibrary.org/obo/GO_0031329 regulation of cellular catabolic process http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0044248 cellular catabolic process http://purl.obolibrary.org/obo/GO_0044087 regulation of cellular component biogenesis http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0044085 cellular component biogenesis http://purl.obolibrary.org/obo/GO_0051128 regulation of cellular component organization http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0016043 cellular component organization http://purl.obolibrary.org/obo/GO_0010185 regulation of cellular defense response http://purl.obolibrary.org/obo/GO_0065007 biological regulation http://purl.obolibrary.org/obo/GO_0006968 cellular defense response diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl index af0cdea41b..a372797be7 100644 --- a/src/ontology/imports/go-pattern-conformance.ttl +++ b/src/ontology/imports/go-pattern-conformance.ttl @@ -13935,16 +13935,6 @@ . - , - . - - - . - - - . - - .