diff --git a/docs/patterns/multi_organism_process.md b/docs/patterns/multi_organism_process.md index 67d62e1692..37b47b04a9 100644 --- a/docs/patterns/multi_organism_process.md +++ b/docs/patterns/multi_organism_process.md @@ -29,7 +29,7 @@ TODO ## Equivalent to -`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486)) +`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [PATO_0002486](http://purl.obolibrary.org/obo/PATO_0002486)) diff --git a/docs/patterns/protein_complex_by_activity.md b/docs/patterns/protein_complex_by_activity.md index 92888d3269..85be12daf1 100644 --- a/docs/patterns/protein_complex_by_activity.md +++ b/docs/patterns/protein_complex_by_activity.md @@ -29,7 +29,7 @@ TODO ## Equivalent to -[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`) +[protein-containing complex](http://purl.obolibrary.org/obo/GO_0032991) and ([capable_of](http://purl.obolibrary.org/obo/RO_0002215) some `{function}`) diff --git a/docs/patterns/single_organism_process.md b/docs/patterns/single_organism_process.md index d8076858a2..61a527175e 100644 --- a/docs/patterns/single_organism_process.md +++ b/docs/patterns/single_organism_process.md @@ -29,7 +29,7 @@ TODO ## Equivalent to -`{process}` and ([bearer of](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487)) +`{process}` and ([has characteristic](http://purl.obolibrary.org/obo/RO_0000053) some [single organismal process quality](http://purl.obolibrary.org/obo/PATO_0002487)) diff --git a/src/design_patterns/negative_regulation.tsv b/src/design_patterns/negative_regulation.tsv index f4586a9080..fb640ca7e1 100644 --- a/src/design_patterns/negative_regulation.tsv +++ b/src/design_patterns/negative_regulation.tsv @@ -825,9 +825,6 @@ http://purl.obolibrary.org/obo/GO_2000955 negative regulation of cyclodextrin me http://purl.obolibrary.org/obo/GO_1904042 negative regulation of cystathionine beta-synthase activity http://purl.obolibrary.org/obo/GO_0004122 cystathionine beta-synthase activity http://purl.obolibrary.org/obo/GO_1901495 negative regulation of cysteine metabolic process http://purl.obolibrary.org/obo/GO_0006534 cysteine metabolic process http://purl.obolibrary.org/obo/GO_2000117 negative regulation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_0004197 cysteine-type endopeptidase activity -http://purl.obolibrary.org/obo/GO_0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0097153 cysteine-type endopeptidase activity involved in apoptotic process -http://purl.obolibrary.org/obo/GO_2001268 negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway -http://purl.obolibrary.org/obo/GO_2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_0060302 negative regulation of cytokine activity http://purl.obolibrary.org/obo/GO_0005125 cytokine activity http://purl.obolibrary.org/obo/GO_0001818 negative regulation of cytokine production http://purl.obolibrary.org/obo/GO_0001816 cytokine production http://purl.obolibrary.org/obo/GO_0002719 negative regulation of cytokine production involved in immune response http://purl.obolibrary.org/obo/GO_0002367 cytokine production involved in immune response diff --git a/src/design_patterns/positive_regulation.tsv b/src/design_patterns/positive_regulation.tsv index 0c894900f4..fac5e22250 100644 --- a/src/design_patterns/positive_regulation.tsv +++ b/src/design_patterns/positive_regulation.tsv @@ -817,9 +817,6 @@ http://purl.obolibrary.org/obo/GO_2000959 positive regulation of cyclodextrin ca http://purl.obolibrary.org/obo/GO_2000956 positive regulation of cyclodextrin metabolic process http://purl.obolibrary.org/obo/GO_2000900 cyclodextrin metabolic process http://purl.obolibrary.org/obo/GO_1901496 positive regulation of cysteine metabolic process http://purl.obolibrary.org/obo/GO_0006534 cysteine metabolic process http://purl.obolibrary.org/obo/GO_2001056 positive regulation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_0004197 cysteine-type endopeptidase activity -http://purl.obolibrary.org/obo/GO_0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0097153 cysteine-type endopeptidase activity involved in apoptotic process -http://purl.obolibrary.org/obo/GO_2001269 positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway -http://purl.obolibrary.org/obo/GO_2001272 positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_1904960 positive regulation of cytochrome-c oxidase activity http://purl.obolibrary.org/obo/GO_0004129 cytochrome-c oxidase activity http://purl.obolibrary.org/obo/GO_0060301 positive regulation of cytokine activity http://purl.obolibrary.org/obo/GO_0005125 cytokine activity http://purl.obolibrary.org/obo/GO_0001819 positive regulation of cytokine production http://purl.obolibrary.org/obo/GO_0001816 cytokine production diff --git a/src/design_patterns/regulation.tsv b/src/design_patterns/regulation.tsv index cbe83d45ea..b73e0fb7f7 100644 --- a/src/design_patterns/regulation.tsv +++ b/src/design_patterns/regulation.tsv @@ -944,9 +944,6 @@ http://purl.obolibrary.org/obo/GO_2000954 regulation of cyclodextrin metabolic p http://purl.obolibrary.org/obo/GO_1904041 regulation of cystathionine beta-synthase activity http://purl.obolibrary.org/obo/GO_0004122 cystathionine beta-synthase activity http://purl.obolibrary.org/obo/GO_1901494 regulation of cysteine metabolic process http://purl.obolibrary.org/obo/GO_0006534 cysteine metabolic process http://purl.obolibrary.org/obo/GO_2000116 regulation of cysteine-type endopeptidase activity http://purl.obolibrary.org/obo/GO_0004197 cysteine-type endopeptidase activity -http://purl.obolibrary.org/obo/GO_0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process http://purl.obolibrary.org/obo/GO_0097153 cysteine-type endopeptidase activity involved in apoptotic process -http://purl.obolibrary.org/obo/GO_2001267 regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway http://purl.obolibrary.org/obo/GO_0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway -http://purl.obolibrary.org/obo/GO_2001270 regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis http://purl.obolibrary.org/obo/GO_1904959 regulation of cytochrome-c oxidase activity http://purl.obolibrary.org/obo/GO_0004129 cytochrome-c oxidase activity http://purl.obolibrary.org/obo/GO_0060300 regulation of cytokine activity http://purl.obolibrary.org/obo/GO_0005125 cytokine activity http://purl.obolibrary.org/obo/GO_0001817 regulation of cytokine production http://purl.obolibrary.org/obo/GO_0001816 cytokine production diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl index bb59d8ad51..941c2e3dfb 100644 --- a/src/ontology/imports/go-pattern-conformance.ttl +++ b/src/ontology/imports/go-pattern-conformance.ttl @@ -20757,9 +20757,6 @@ . - . - - . @@ -20903,12 +20900,6 @@ . - . - - - . - - . @@ -58074,24 +58065,6 @@ . - . - - - . - - - . - - - . - - - . - - - . - - , .