update_taxon_constraints.yml

name: Update taxon constraints

on:
  workflow_dispatch:
  schedule:
  - cron: '0 12 * * *'

jobs:
  update:

    runs-on: ubuntu-latest
    container: obolibrary/odkfull:${{ vars.ODK_VERSION }}

    steps:
    - name: Checkout repo
      uses: actions/checkout@v3
      
    - name: Work around https://github.com/peter-evans/create-pull-request/issues/1170
      run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
      
    - name: Update taxon constraints
      run: touch src/taxon_constraints/never_in_taxon.tsv src/taxon_constraints/only_in_taxon.tsv src/taxon_constraints/present_in_taxon.tsv && cd src/ontology && make imports/go_taxon_constraints.owl && cd ../..
    
    - name: Create PR
      uses: peter-evans/create-pull-request@v5
      with:
        title: Update taxon constraints
        branch: update-taxon-constraints
        add-paths: |
          src/taxon_constraints/never_in_taxon.ofn
          src/taxon_constraints/only_in_taxon.ofn
          src/taxon_constraints/present_in_taxon.ofn
          src/taxon_constraints/present_in_taxon_annotations.ofn
          src/ontology/imports/go_taxon_constraints.owl
        token: ${{ secrets.PR_ACTION_TOKEN }}