From e480e5563aeb8996e866c514e72e182f93403061 Mon Sep 17 00:00:00 2001 From: Janina Smola Date: Wed, 8 May 2024 12:14:34 +0200 Subject: [PATCH 1/2] fix: typo --- DESCRIPTION | 10 +++++----- NEWS.md | 3 +++ inst/umls/overview.puml | 2 +- rplatform/dependencies.yaml | 10 +++++----- 4 files changed, 14 insertions(+), 11 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index bf6490d..b497786 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -22,15 +22,15 @@ Description: Package is a part of the gDR suite. It reexports functions from oth License: Artistic-2.0 Depends: R (>= 4.2), - gDRcore (>= 1.1.11), - gDRimport (>= 1.1.4), - gDRutils (>= 1.1.5) + gDRcore (>= 1.1.19), + gDRimport (>= 1.1.9), + gDRutils (>= 1.1.12) Suggests: BiocStyle, BumpyMatrix, futile.logger, - gDRstyle (>= 1.1.3), - gDRtestData (>= 1.1.7), + gDRstyle (>= 1.1.5), + gDRtestData (>= 1.1.10), kableExtra, knitr, markdown, diff --git a/NEWS.md b/NEWS.md index abfdee0..730283e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,6 @@ +## gDR 1.1.6 - 2024-05-08 +* fix typo + ## gDR 1.1.5 - 2024-02-26 * improve pkgdown site * improved references diff --git a/inst/umls/overview.puml b/inst/umls/overview.puml index 28e4603..3863272 100644 --- a/inst/umls/overview.puml +++ b/inst/umls/overview.puml @@ -20,7 +20,7 @@ gDRcore --> MAE: " gDRcore::runDrugResponseProcessingPipeline" CLI --> gDRcore note top of gDRutils -utility functions for munging and analyzing drug reponse data +utility functions for munging and analyzing drug response data end note note top on link diff --git a/rplatform/dependencies.yaml b/rplatform/dependencies.yaml index 25cbf76..6dc36ad 100644 --- a/rplatform/dependencies.yaml +++ b/rplatform/dependencies.yaml @@ -1,30 +1,30 @@ pkgs: gDRstyle: - ver: '>=1.1.3' + ver: '>=1.1.5' url: gdrplatform/gDRstyle ref: main subdir: ~ source: GITHUB gDRtestData: - ver: '>=1.1.7' + ver: '>=1.1.10' url: gdrplatform/gDRtestData ref: ~ subdir: ~ source: GITHUB gDRutils: - ver: '>=1.1.5' + ver: '>=1.1.12' url: gdrplatform/gDRutils ref: main subdir: ~ source: GITHUB gDRimport: - ver: '>=1.1.4' + ver: '>=1.1.9' url: gdrplatform/gDRimport ref: main subdir: ~ source: GITHUB gDRcore: - ver: '>=1.1.11' + ver: '>=1.1.19' url: gdrplatform/gDRcore ref: main subdir: ~ From efe7aa5af39426b6539ce3de3a85d969c705cb82 Mon Sep 17 00:00:00 2001 From: Janina Smola Date: Wed, 8 May 2024 13:35:52 +0200 Subject: [PATCH 2/2] chore: update puml img --- inst/images/overview.png | Bin 29877 -> 29608 bytes inst/umls/refresh.sh | 7 +++++-- 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p2WT!e344?kkSK%y`yV^`o>WvSnPUpSP6(-#!ehvze3_?j{tqrkWQYI& diff --git a/inst/umls/refresh.sh b/inst/umls/refresh.sh old mode 100644 new mode 100755 index aa49645..a034a33 --- a/inst/umls/refresh.sh +++ b/inst/umls/refresh.sh @@ -1,7 +1,10 @@ # sudo apt-get install plantuml # pretty old version #jar_path="/usr/share/platinuml/platinuml.jar" -# https://github.com/plantuml/plantuml/releases/download/v1.2023.13/plantuml-1.2023.13.jar jar_path="./plantuml-1.2023.13.jar" -#java -Djava.awt.headless=true -jar $jar_path *.puml -tsvg -o ../images/ +if [ -f $jar_path ]; then + echo "File $jar_path exists." +else + wget https://github.com/plantuml/plantuml/releases/download/v1.2023.13/plantuml-1.2023.13.jar +fi java -Djava.awt.headless=true -jar $jar_path *.puml -tpng -o ../images/