topsApp_multi_asf.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "6a0c3345-538f-4279-b279-c7540c3349d4",
   "metadata": {},
   "source": [
    "# Processing multiple interferograms with ISCE"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "c55a91de-6b84-4f0a-b835-017461faf441",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "This is the Open Source version of ISCE.\n",
      "Some of the workflows depend on a separate licensed package.\n",
      "To obtain the licensed package, please make a request for ISCE\n",
      "through the website: https://download.jpl.nasa.gov/ops/request/index.cfm.\n",
      "Alternatively, if you are a member, or can become a member of WinSAR\n",
      "you may be able to obtain access to a version of the licensed sofware at\n",
      "https://winsar.unavco.org/software/isce\n",
      "2023-02-22 21:51:18,492 - matplotlib - DEBUG - matplotlib data path: /home/jovyan/.local/envs/insar_analysis/lib/python3.8/site-packages/matplotlib/mpl-data\n",
      "2023-02-22 21:51:18,510 - matplotlib - DEBUG - CONFIGDIR=/home/jovyan/.config/matplotlib\n",
      "2023-02-22 21:51:18,512 - matplotlib - DEBUG - interactive is False\n",
      "2023-02-22 21:51:18,513 - matplotlib - DEBUG - platform is linux\n",
      "2023-02-22 21:51:18,618 - matplotlib - DEBUG - CACHEDIR=/home/jovyan/.cache/matplotlib\n",
      "2023-02-22 21:51:18,622 - matplotlib.font_manager - DEBUG - Using fontManager instance from /home/jovyan/.cache/matplotlib/fontlist-v330.json\n",
      "2023-02-22 21:51:21,616 - numcodecs - DEBUG - Registering codec 'zlib'\n",
      "2023-02-22 21:51:21,618 - numcodecs - DEBUG - Registering codec 'gzip'\n",
      "2023-02-22 21:51:21,620 - numcodecs - DEBUG - Registering codec 'bz2'\n",
      "2023-02-22 21:51:21,622 - numcodecs - DEBUG - Registering codec 'lzma'\n",
      "2023-02-22 21:51:21,632 - numcodecs - DEBUG - Registering codec 'blosc'\n",
      "2023-02-22 21:51:21,637 - numcodecs - DEBUG - Registering codec 'zstd'\n",
      "2023-02-22 21:51:21,641 - numcodecs - DEBUG - Registering codec 'lz4'\n",
      "2023-02-22 21:51:21,644 - numcodecs - DEBUG - Registering codec 'astype'\n",
      "2023-02-22 21:51:21,647 - numcodecs - DEBUG - Registering codec 'delta'\n",
      "2023-02-22 21:51:21,648 - numcodecs - DEBUG - Registering codec 'quantize'\n",
      "2023-02-22 21:51:21,650 - numcodecs - DEBUG - Registering codec 'fixedscaleoffset'\n",
      "2023-02-22 21:51:21,652 - numcodecs - DEBUG - Registering codec 'packbits'\n",
      "2023-02-22 21:51:21,654 - numcodecs - DEBUG - Registering codec 'categorize'\n",
      "2023-02-22 21:51:21,655 - numcodecs - DEBUG - Registering codec 'pickle'\n",
      "2023-02-22 21:51:21,657 - numcodecs - DEBUG - Registering codec 'base64'\n",
      "2023-02-22 21:51:21,661 - numcodecs - DEBUG - Registering codec 'shuffle'\n",
      "2023-02-22 21:51:21,663 - numcodecs - DEBUG - Registering codec 'bitround'\n",
      "2023-02-22 21:51:21,664 - numcodecs - DEBUG - Registering codec 'msgpack2'\n",
      "2023-02-22 21:51:21,666 - numcodecs - DEBUG - Registering codec 'crc32'\n",
      "2023-02-22 21:51:21,667 - numcodecs - DEBUG - Registering codec 'adler32'\n",
      "2023-02-22 21:51:21,669 - numcodecs - DEBUG - Registering codec 'json2'\n",
      "2023-02-22 21:51:21,673 - numcodecs - DEBUG - Registering codec 'vlen-utf8'\n",
      "2023-02-22 21:51:21,674 - numcodecs - DEBUG - Registering codec 'vlen-bytes'\n",
      "2023-02-22 21:51:21,675 - numcodecs - DEBUG - Registering codec 'vlen-array'\n",
      "2023-02-22 21:51:21,699 - numcodecs - DEBUG - Registering codec 'n5_wrapper'\n"
     ]
    }
   ],
   "source": [
    "# Import required packages\n",
    "import logging\n",
    "log = logging.getLogger()\n",
    "log.setLevel(logging.WARN)\n",
    "import os\n",
    "import getpass\n",
    "import asf_search as asf\n",
    "import isce\n",
    "from os import listdir\n",
    "import numpy as np\n",
    "import matplotlib.pyplot as plt\n",
    "import matplotlib.collections as mc\n",
    "from osgeo import gdal\n",
    "from datetime import datetime, timedelta\n",
    "import xarray as xr\n",
    "import rasterio as rio\n",
    "import rioxarray\n",
    "import geopandas as gpd\n",
    "import time"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8ef2b5b1-b1fe-46f4-81ea-899e27818ee6",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Set environment variables so that you can call ISCE from the command line\n",
    "os.environ['ISCE_HOME'] = os.path.dirname(isce.__file__)\n",
    "os.environ['ISCE_ROOT'] = os.path.dirname(os.environ['ISCE_HOME'])\n",
    "os.environ['PATH']+='{ISCE_HOME}/bin:{ISCE_HOME}/applications'.format(**os.environ)\n",
    "print(os.environ['PATH'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a212a8e5-d356-4133-84b5-aff026ba1537",
   "metadata": {},
   "outputs": [],
   "source": [
    "!which topsApp.py"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "042c5202-1a0a-4287-b965-88e5c9827fc9",
   "metadata": {},
   "outputs": [],
   "source": [
    "scene_list = ['S1A_IW_SLC__1SSV_20150724T130905_20150724T130934_006953_0096A9_46FE',\n",
    "              'S1A_IW_SLC__1SSV_20150817T130906_20150817T130936_007303_00A04B_63DC',\n",
    "              'S1A_IW_SLC__1SSV_20150910T130907_20150910T130937_007653_00A9DB_A94D',\n",
    "              'S1A_IW_SLC__1SSV_20160718T130905_20160718T130935_012203_012F06_90B6',\n",
    "              'S1A_IW_SLC__1SSV_20160811T130906_20160811T130936_012553_013A96_C2EF',\n",
    "              'S1A_IW_SLC__1SSV_20160904T130908_20160904T130937_012903_014647_0D62',\n",
    "              'S1A_IW_SLC__1SDV_20170725T130907_20170725T130934_017628_01D812_AB22',\n",
    "              'S1A_IW_SLC__1SDV_20170806T130907_20170806T130934_017803_01DD66_D12A',\n",
    "              'S1A_IW_SLC__1SDV_20170818T130908_20170818T130935_017978_01E2B4_97AF',\n",
    "              'S1A_IW_SLC__1SDV_20170830T130909_20170830T130936_018153_01E7F9_82F8',\n",
    "              'S1A_IW_SLC__1SDV_20170911T130909_20170911T130936_018328_01ED72_390F',\n",
    "              'S1A_IW_SLC__1SDV_20180720T130913_20180720T130940_022878_027B2F_2FE4',\n",
    "              'S1A_IW_SLC__1SDV_20180801T130914_20180801T130940_023053_0280B9_EF39',\n",
    "              'S1A_IW_SLC__1SDV_20180813T130916_20180813T130946_023228_028653_F81C',\n",
    "              'S1A_IW_SLC__1SDV_20180825T130917_20180825T130947_023403_028BF2_E58F',\n",
    "              'S1A_IW_SLC__1SDV_20180906T130917_20180906T130947_023578_029189_3FCA',\n",
    "              'S1A_IW_SLC__1SDV_20190715T130920_20190715T130950_028128_032D4E_7792',\n",
    "              'S1A_IW_SLC__1SDV_20190727T130921_20190727T130951_028303_0332A5_58AD',\n",
    "              'S1A_IW_SLC__1SDV_20190808T130918_20190808T130944_028478_033802_7E38',\n",
    "              'S1A_IW_SLC__1SDV_20190820T130918_20190820T130945_028653_033E13_DA5B',\n",
    "              'S1A_IW_SLC__1SDV_20190901T130919_20190901T130946_028828_03442D_4484',\n",
    "              'S1A_IW_SLC__1SDV_20190913T130919_20190913T130946_029003_034A3F_5568',\n",
    "              'S1A_IW_SLC__1SDV_20200721T130923_20200721T130950_033553_03E363_B8F9',\n",
    "              'S1A_IW_SLC__1SDV_20200802T130924_20200802T130951_033728_03E8C2_6B3A',\n",
    "              'S1A_IW_SLC__1SDV_20200814T130924_20200814T130951_033903_03EEAD_F614',\n",
    "              'S1A_IW_SLC__1SDV_20200826T130925_20200826T130952_034078_03F4DE_B501',\n",
    "              'S1A_IW_SLC__1SDV_20200907T130926_20200907T130953_034253_03FB06_4591',\n",
    "              'S1A_IW_SLC__1SDV_20210716T130929_20210716T130955_038803_04941E_7251',\n",
    "              'S1A_IW_SLC__1SDV_20210728T130929_20210728T130956_038978_049956_7D41',\n",
    "              'S1A_IW_SLC__1SDV_20210809T130930_20210809T130957_039153_049EFA_BFE7',\n",
    "              'S1A_IW_SLC__1SDV_20210821T130930_20210821T130957_039328_04A504_A838',\n",
    "              'S1A_IW_SLC__1SDV_20210902T130931_20210902T130958_039503_04AAFA_D28A',\n",
    "              'S1A_IW_SLC__1SDV_20210914T130932_20210914T130959_039678_04B10F_0E48'\n",
    "             ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "388b3383-ea78-4e03-b13c-9dd8bf0ea6b0",
   "metadata": {},
   "outputs": [],
   "source": [
    "def select_pairs(scene_list, max_temp_bline):\n",
    "    scene_dates = {}\n",
    "    for scene in scene_list:\n",
    "        date = scene[17:25]\n",
    "        scene_dates[date] = scene\n",
    "        \n",
    "    pair_dict = {}\n",
    "    pair_scenes = []\n",
    "    for date1 in scene_dates:\n",
    "        for date2 in scene_dates:\n",
    "            if datetime.strptime(date2, '%Y%m%d')-datetime.strptime(date1, '%Y%m%d') < timedelta(days=max_temp_bline) and not date1 >= date2 :\n",
    "                pair_dict[f'{date1}-{date2}'] = [scene_dates[date1], scene_dates[date2]]\n",
    "                pair_scenes.append(scene_dates[date1])\n",
    "                pair_scenes.append(scene_dates[date2])\n",
    "    pair_scenes = [*set(pair_scenes)]\n",
    "    \n",
    "    print(f'number of pairs: {len(pair_dict)}')\n",
    "    \n",
    "    return pair_dict, pair_scenes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "bdfe9f2f-35f1-4a29-b567-91e890b1b154",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "number of pairs: 43\n"
     ]
    }
   ],
   "source": [
    "pair_dict, pair_scenes = select_pairs(scene_list, 25)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "abae26d9-e6b4-4970-8db8-25dae63032c9",
   "metadata": {},
   "outputs": [],
   "source": [
    "proc_path = '/home/jovyan/rmnp_landslide/proc_T56D'\n",
    "dem_name = 'usgs_10m.dem.wgs84'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9e4ffb84-b4e7-421c-b445-85b71b456088",
   "metadata": {},
   "outputs": [],
   "source": [
    "for pair in pair_dict:\n",
    "    pair_path = f'{proc_path}/{pair}'\n",
    "    if not os.path.exists(pair_path):\n",
    "                          os.makedirs(pair_path)\n",
    "    !cp '{proc_path}/{dem_name}.xml' '{pair_path}/{dem_name}.xml'\n",
    "    !cp '{proc_path}/{dem_name}' '{pair_path}/{dem_name}'"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "ffca146b-b4d7-41e9-967f-25994166f1d0",
   "metadata": {
    "tags": []
   },
   "source": [
    "## Download all SLCs"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1ac93aa1-1510-4f74-ab20-a946e6855b2a",
   "metadata": {},
   "outputs": [],
   "source": [
    "EARTHDATA_LOGIN = \"qbrencherUW\"\n",
    "EARTHDATA_PASSWORD = getpass.getpass()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "25b57601-b242-4170-ab05-e574d1b25678",
   "metadata": {},
   "outputs": [],
   "source": [
    "# Change to SLC directory\n",
    "os.chdir(f'{proc_path}/slc')\n",
    "\n",
    "logging.getLogger(\"urllib3\").setLevel(logging.WARNING)\n",
    "\n",
    "results = asf.granule_search(pair_scenes)\n",
    "session = asf.ASFSession().auth_with_creds(EARTHDATA_LOGIN, EARTHDATA_PASSWORD)\n",
    "results.download(path=f'{proc_path}/slc', processes=2, session=session)"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "d9d666cc-986f-4dbe-b7a8-331f57a782b5",
   "metadata": {},
   "source": [
    "## Download orbital files"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f3189605-6284-48cc-9d84-ce78f4922af6",
   "metadata": {},
   "outputs": [],
   "source": [
    "os.chdir(f'{proc_path}/orbital')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a3efb2f8-d570-4922-9cc9-d1189ce153ce",
   "metadata": {},
   "outputs": [],
   "source": [
    "%%bash\n",
    "\n",
    "wget -nc https://raw.githubusercontent.com/isce-framework/isce2/main/contrib/stack/topsStack/fetchOrbit.py\n",
    "chmod +x fetchOrbit.py"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d422ced4-ce14-4108-a7f5-dfdfc2083a6d",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "# grab orbital files with fetchOrbit.py\n",
    "for scene in pair_scenes:\n",
    "    os.system(f'./fetchOrbit.py -i {scene}')"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "8924dad9-261f-4f9a-a6c2-257864b3b7a3",
   "metadata": {},
   "source": [
    "## Write input files"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8891cffe-bbae-4edd-8fd8-5ed29f8bceba",
   "metadata": {},
   "outputs": [],
   "source": [
    "for pair in pair_dict:\n",
    "    os.chdir(f'{proc_path}/{pair}')\n",
    "    \n",
    "    reference = pair_dict[pair][0]\n",
    "    secondary = pair_dict[pair][1]\n",
    "    \n",
    "    with open('topsApp.xml', 'w') as f:\n",
    "        f.write(f\"\"\"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n",
    "    <topsApp>\n",
    "      <component name=\"topsinsar\">\n",
    "        <property name=\"Sensor name\">SENTINEL1</property>\n",
    "        <component name=\"reference\">\n",
    "            <property name=\"orbit directory\">{proc_path}/orbital</property>\n",
    "            <property name=\"output directory\">reference</property>\n",
    "            <property name=\"safe\">{proc_path}/slc/{reference}.zip</property>\n",
    "        </component>\n",
    "        <component name=\"secondary\">\n",
    "            <property name=\"orbit directory\">{proc_path}/orbital</property>\n",
    "            <property name=\"output directory\">secondary</property>\n",
    "            <property name=\"safe\">{proc_path}/slc/{secondary}.zip</property>\n",
    "        </component>\n",
    "        <property name=\"demfilename\">{proc_path}/usgs_10m.dem.wgs84</property>\n",
    "        <property name=\"useGPU\">True</property>\n",
    "        <property name=\"range looks\">6</property>\n",
    "        <property name=\"azimuth looks\">1</property>\n",
    "        <property name=\"swaths\">[1]</property>\n",
    "        <property name=\"region of interest\">[40.30, 40.310, -105.69, -105.67]</property>\n",
    "        <property name=\"do esd\">False</property>\n",
    "        <property name=\"do ionospherecorrection\">False</property>\n",
    "        <property name=\"do unwrap\">True</property>\n",
    "        <property name=\"unwrapper name\">snaphu_mcf</property>\n",
    "        <property name=\"do denseoffsets\">False</property>\n",
    "        <property name=\"geocode demfilename\">{proc_path}/usgs_10m.dem.wgs84</property>\n",
    "        <property name=\"geocode list\">['merged/topophase.cor', 'merged/filt_topophase.unw', 'merged/filt_topophase.flat']</property>\n",
    "      </component>\n",
    "    </topsApp>\"\"\")"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "f93a3cd7-f90e-4a1a-aa7e-cc893c77a4ac",
   "metadata": {},
   "source": [
    "## TopsApp processing"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e8f9d192-b2ef-4616-9acb-1ff8442199d3",
   "metadata": {},
   "outputs": [],
   "source": [
    "# for DT56 only\n",
    "# pair_dict = {\n",
    "#     '20190715-20190808': ['S1A_IW_SLC__1SDV_20190715T130920_20190715T130950_028128_032D4E_7792',\n",
    "#                           'S1A_IW_SLC__1SDV_20190808T130918_20190808T130944_028478_033802_7E38'],\n",
    "#     '20190715-20190820': ['S1A_IW_SLC__1SDV_20190715T130920_20190715T130950_028128_032D4E_7792',\n",
    "#                           'S1A_IW_SLC__1SDV_20190820T130918_20190820T130945_028653_033E13_DA5B'],\n",
    "#     '20190727-20190808': ['S1A_IW_SLC__1SDV_20190727T130921_20190727T130951_028303_0332A5_58AD',\n",
    "#                           'S1A_IW_SLC__1SDV_20190808T130918_20190808T130944_028478_033802_7E38'],\n",
    "#     '20190727-20190820': ['S1A_IW_SLC__1SDV_20190727T130921_20190727T130951_028303_0332A5_58AD',\n",
    "#                           'S1A_IW_SLC__1SDV_20190820T130918_20190820T130945_028653_033E13_DA5B'],\n",
    "#     '20190727-20190901': ['S1A_IW_SLC__1SDV_20190727T130921_20190727T130951_028303_0332A5_58AD',\n",
    "#                           'S1A_IW_SLC__1SDV_20190901T130919_20190901T130946_028828_03442D_4484'],\n",
    "#     '20190808-20190820': ['S1A_IW_SLC__1SDV_20190808T130918_20190808T130944_028478_033802_7E38',\n",
    "#                           'S1A_IW_SLC__1SDV_20190820T130918_20190820T130945_028653_033E13_DA5B'],\n",
    "#     '20190808-20190901': ['S1A_IW_SLC__1SDV_20190808T130918_20190808T130944_028478_033802_7E38',\n",
    "#                           'S1A_IW_SLC__1SDV_20190901T130919_20190901T130946_028828_03442D_4484'],\n",
    "#     '20190808-20190913': ['S1A_IW_SLC__1SDV_20190808T130918_20190808T130944_028478_033802_7E38',\n",
    "#                           'S1A_IW_SLC__1SDV_20190913T130919_20190913T130946_029003_034A3F_5568'],\n",
    "#     '20190820-20190901': ['S1A_IW_SLC__1SDV_20190820T130918_20190820T130945_028653_033E13_DA5B',\n",
    "#                           'S1A_IW_SLC__1SDV_20190901T130919_20190901T130946_028828_03442D_4484'],\n",
    "#     '20190820-20190913': ['S1A_IW_SLC__1SDV_20190820T130918_20190820T130945_028653_033E13_DA5B',\n",
    "#                           'S1A_IW_SLC__1SDV_20190913T130919_20190913T130946_029003_034A3F_5568'],\n",
    "#     '20190901-20190913': ['S1A_IW_SLC__1SDV_20190901T130919_20190901T130946_028828_03442D_4484',\n",
    "#                           'S1A_IW_SLC__1SDV_20190913T130919_20190913T130946_029003_034A3F_5568'],\n",
    "#     '20200721-20200802': ['S1A_IW_SLC__1SDV_20200721T130923_20200721T130950_033553_03E363_B8F9',\n",
    "#                           'S1A_IW_SLC__1SDV_20200802T130924_20200802T130951_033728_03E8C2_6B3A'],\n",
    "#     '20200721-20200814': ['S1A_IW_SLC__1SDV_20200721T130923_20200721T130950_033553_03E363_B8F9',\n",
    "#                           'S1A_IW_SLC__1SDV_20200814T130924_20200814T130951_033903_03EEAD_F614'],\n",
    "#     '20200721-20200826': ['S1A_IW_SLC__1SDV_20200721T130923_20200721T130950_033553_03E363_B8F9',\n",
    "#                           'S1A_IW_SLC__1SDV_20200826T130925_20200826T130952_034078_03F4DE_B501'],\n",
    "#     '20200802-20200814': ['S1A_IW_SLC__1SDV_20200802T130924_20200802T130951_033728_03E8C2_6B3A',\n",
    "#                           'S1A_IW_SLC__1SDV_20200814T130924_20200814T130951_033903_03EEAD_F614'],\n",
    "#     '20200802-20200826': ['S1A_IW_SLC__1SDV_20200802T130924_20200802T130951_033728_03E8C2_6B3A',\n",
    "#                           'S1A_IW_SLC__1SDV_20200826T130925_20200826T130952_034078_03F4DE_B501'],\n",
    "#     '20200802-20200907': ['S1A_IW_SLC__1SDV_20200802T130924_20200802T130951_033728_03E8C2_6B3A',\n",
    "#                           'S1A_IW_SLC__1SDV_20200907T130926_20200907T130953_034253_03FB06_4591'],\n",
    "#     '20200814-20200826': ['S1A_IW_SLC__1SDV_20200814T130924_20200814T130951_033903_03EEAD_F614',\n",
    "#                           'S1A_IW_SLC__1SDV_20200826T130925_20200826T130952_034078_03F4DE_B501'],\n",
    "#     '20200814-20200907': ['S1A_IW_SLC__1SDV_20200814T130924_20200814T130951_033903_03EEAD_F614',\n",
    "#                           'S1A_IW_SLC__1SDV_20200907T130926_20200907T130953_034253_03FB06_4591'],\n",
    "#     '20200826-20200907': ['S1A_IW_SLC__1SDV_20200826T130925_20200826T130952_034078_03F4DE_B501',\n",
    "#                           'S1A_IW_SLC__1SDV_20200907T130926_20200907T130953_034253_03FB06_4591'],\n",
    "#     '20210716-20210728': ['S1A_IW_SLC__1SDV_20210716T130929_20210716T130955_038803_04941E_7251',\n",
    "#                           'S1A_IW_SLC__1SDV_20210728T130929_20210728T130956_038978_049956_7D41'],\n",
    "#     '20210716-20210809': ['S1A_IW_SLC__1SDV_20210716T130929_20210716T130955_038803_04941E_7251',\n",
    "#                           'S1A_IW_SLC__1SDV_20210809T130930_20210809T130957_039153_049EFA_BFE7'],\n",
    "#     '20210716-20210821': ['S1A_IW_SLC__1SDV_20210716T130929_20210716T130955_038803_04941E_7251',\n",
    "#                           'S1A_IW_SLC__1SDV_20210821T130930_20210821T130957_039328_04A504_A838'],\n",
    "#     '20210728-20210809': ['S1A_IW_SLC__1SDV_20210728T130929_20210728T130956_038978_049956_7D41',\n",
    "#                           'S1A_IW_SLC__1SDV_20210809T130930_20210809T130957_039153_049EFA_BFE7'],\n",
    "#     '20210728-20210821': ['S1A_IW_SLC__1SDV_20210728T130929_20210728T130956_038978_049956_7D41',\n",
    "#                           'S1A_IW_SLC__1SDV_20210821T130930_20210821T130957_039328_04A504_A838'],\n",
    "#     '20210728-20210902': ['S1A_IW_SLC__1SDV_20210728T130929_20210728T130956_038978_049956_7D41',\n",
    "#                           'S1A_IW_SLC__1SDV_20210902T130931_20210902T130958_039503_04AAFA_D28A'],\n",
    "#     '20210809-20210821': ['S1A_IW_SLC__1SDV_20210809T130930_20210809T130957_039153_049EFA_BFE7',\n",
    "#                           'S1A_IW_SLC__1SDV_20210821T130930_20210821T130957_039328_04A504_A838'],\n",
    "#     '20210809-20210902': ['S1A_IW_SLC__1SDV_20210809T130930_20210809T130957_039153_049EFA_BFE7',\n",
    "#                           'S1A_IW_SLC__1SDV_20210902T130931_20210902T130958_039503_04AAFA_D28A'],\n",
    "#     '20210809-20210914': ['S1A_IW_SLC__1SDV_20210809T130930_20210809T130957_039153_049EFA_BFE7',\n",
    "#                           'S1A_IW_SLC__1SDV_20210914T130932_20210914T130959_039678_04B10F_0E48'],\n",
    "#     '20210821-20210902': ['S1A_IW_SLC__1SDV_20210821T130930_20210821T130957_039328_04A504_A838',\n",
    "#                           'S1A_IW_SLC__1SDV_20210902T130931_20210902T130958_039503_04AAFA_D28A'],\n",
    "#     '20210821-20210914': ['S1A_IW_SLC__1SDV_20210821T130930_20210821T130957_039328_04A504_A838',\n",
    "#                           'S1A_IW_SLC__1SDV_20210914T130932_20210914T130959_039678_04B10F_0E48'],\n",
    "#     '20210902-20210914': ['S1A_IW_SLC__1SDV_20210902T130931_20210902T130958_039503_04AAFA_D28A',\n",
    "#                           'S1A_IW_SLC__1SDV_20210914T130932_20210914T130959_039678_04B10F_0E48']}"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "c16ad77e-689d-423c-8e19-51665d4216b6",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "%%time\n",
    "\n",
    "for pair in pair_dict:\n",
    "    os.chdir(f'{proc_path}/{pair}')\n",
    "    if not os.path.exists(f'{proc_path}/{pair}/merged/filt_topophase.unw.geo'):\n",
    "        !topsApp.py --start=preprocess --end=geocode"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "1bed4961-427a-40f2-a957-ba9a6275fa13",
   "metadata": {},
   "source": [
    "## Filter and stack interferograms\n",
    "### Load igrams into xarray"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "b7abaf78-324b-4fb0-a5f2-06a0098e6c8c",
   "metadata": {},
   "outputs": [],
   "source": [
    "# functions to load interferogram tifs to xarray\n",
    "\n",
    "def xr_read_vrt(vrt_file_path, variable_name, masked=True):\n",
    "    \n",
    "    if os.path.exists(vrt_file_path):\n",
    "        da = rioxarray.open_rasterio(vrt_file_path, masked=True)\n",
    "\n",
    "        # Extract phase and assign as variable in xr.Dataset()\n",
    "        ds = xr.Dataset()\n",
    "        da_phase = da.sel(band=1)\n",
    "        da_phase.name = variable_name\n",
    "        ds[da_phase.name] = da_phase\n",
    "\n",
    "        # Preserve top-level attributes and extract single value from value iterables e.g. (1,) --> 1\n",
    "        ds.attrs = da.attrs\n",
    "        for key, value in ds.attrs.items():\n",
    "            try:\n",
    "                if len(value) == 1:\n",
    "                    ds.attrs[key] = value[0]\n",
    "            except TypeError:\n",
    "                pass\n",
    "    \n",
    "        # crop to roi\n",
    "        ds = ds.rio.clip_box(minx=-105.69, miny=40.29, maxx=-105.66, maxy=40.31) \n",
    "\n",
    "        return ds\n",
    "    \n",
    "    else:\n",
    "        print('path does not exist')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "e6c4c323-e976-4515-bfef-7e534796144f",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2023-02-22 21:51:40,770 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a8491e220>\n",
      "2023-02-22 21:51:40,772 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:40,773 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:40,774 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a84936310> created\n",
      "2023-02-22 21:51:40,776 - rasterio._filepath - DEBUG - Installing FilePath filesystem handler plugin...\n",
      "2023-02-22 21:51:40,777 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:40,779 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:40,780 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a84936310>.\n",
      "2023-02-22 21:51:40,781 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a8491e220>\n",
      "2023-02-22 21:51:40,782 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:40,816 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:40,817 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20150724-20150817/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:40,819 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a8491e220>\n",
      "2023-02-22 21:51:40,820 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a84936310> options\n",
      "2023-02-22 21:51:40,820 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a84936310>.\n",
      "2023-02-22 21:51:40,821 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:40,821 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a8491e220>\n",
      "2023-02-22 21:51:40,840 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:40,844 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65afd0d0>\n",
      "2023-02-22 21:51:40,845 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:40,846 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:40,846 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65b078e0> created\n",
      "2023-02-22 21:51:40,847 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:40,848 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:40,849 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65b078e0>.\n",
      "2023-02-22 21:51:40,850 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65afd0d0>\n",
      "2023-02-22 21:51:40,851 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65afd0d0>\n",
      "2023-02-22 21:51:40,853 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65b078e0> options\n",
      "2023-02-22 21:51:40,855 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65b078e0>.\n",
      "2023-02-22 21:51:40,856 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:40,857 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65afd0d0>\n",
      "2023-02-22 21:51:40,877 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:40,878 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:40,879 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:40,880 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:40,881 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:40,881 - rasterio._io - DEBUG - Window: Window(col_off=12065, row_off=2619, width=325, height=217)\n",
      "2023-02-22 21:51:40,883 - rasterio._io - DEBUG - IO window xoff=12065.0 yoff=2619.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:41,105 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a984f0>\n",
      "2023-02-22 21:51:41,106 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:41,107 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:41,108 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65afd3d0> created\n",
      "2023-02-22 21:51:41,109 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:41,110 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:41,111 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65afd3d0>.\n",
      "2023-02-22 21:51:41,112 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a984f0>\n",
      "2023-02-22 21:51:41,112 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:41,115 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:41,116 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20150817-20150910/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:41,117 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a984f0>\n",
      "2023-02-22 21:51:41,117 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65afd3d0> options\n",
      "2023-02-22 21:51:41,119 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65afd3d0>.\n",
      "2023-02-22 21:51:41,120 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:41,120 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a984f0>\n",
      "2023-02-22 21:51:41,135 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:41,140 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65ab8d90>\n",
      "2023-02-22 21:51:41,141 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:41,142 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:41,143 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65afd3d0> created\n",
      "2023-02-22 21:51:41,144 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:41,145 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:41,146 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65afd3d0>.\n",
      "2023-02-22 21:51:41,147 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65ab8d90>\n",
      "2023-02-22 21:51:41,148 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65ab8d90>\n",
      "2023-02-22 21:51:41,148 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65afd3d0> options\n",
      "2023-02-22 21:51:41,149 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65afd3d0>.\n",
      "2023-02-22 21:51:41,150 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:41,151 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65ab8d90>\n",
      "2023-02-22 21:51:41,163 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:41,165 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:41,165 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:41,166 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:41,167 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:41,167 - rasterio._io - DEBUG - Window: Window(col_off=12072, row_off=2626, width=325, height=217)\n",
      "2023-02-22 21:51:41,168 - rasterio._io - DEBUG - IO window xoff=12072.0 yoff=2626.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:41,615 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a471f0>\n",
      "2023-02-22 21:51:41,617 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:41,617 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:41,618 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a9c040> created\n",
      "2023-02-22 21:51:41,619 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:41,620 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:41,621 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a9c040>.\n",
      "2023-02-22 21:51:41,622 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a471f0>\n",
      "2023-02-22 21:51:41,622 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:41,632 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:41,632 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20160718-20160811/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:41,633 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a471f0>\n",
      "2023-02-22 21:51:41,634 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a9c040> options\n",
      "2023-02-22 21:51:41,635 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a9c040>.\n",
      "2023-02-22 21:51:41,636 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:41,636 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a471f0>\n",
      "2023-02-22 21:51:41,647 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:41,650 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a6b970>\n",
      "2023-02-22 21:51:41,651 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:41,651 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:41,652 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a47a60> created\n",
      "2023-02-22 21:51:41,653 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:41,654 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:41,654 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a47a60>.\n",
      "2023-02-22 21:51:41,655 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a6b970>\n",
      "2023-02-22 21:51:41,656 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a6b970>\n",
      "2023-02-22 21:51:41,657 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a47a60> options\n",
      "2023-02-22 21:51:41,657 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a47a60>.\n",
      "2023-02-22 21:51:41,658 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:41,659 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a6b970>\n",
      "2023-02-22 21:51:41,671 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:41,671 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:41,672 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:41,673 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:41,673 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:41,674 - rasterio._io - DEBUG - Window: Window(col_off=12067, row_off=2623, width=325, height=217)\n",
      "2023-02-22 21:51:41,675 - rasterio._io - DEBUG - IO window xoff=12067.0 yoff=2623.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:41,950 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a68910>\n",
      "2023-02-22 21:51:41,951 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:41,951 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:41,952 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a6bc40> created\n",
      "2023-02-22 21:51:41,953 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:41,953 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:41,954 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a6bc40>.\n",
      "2023-02-22 21:51:41,955 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a68910>\n",
      "2023-02-22 21:51:41,955 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:41,958 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:41,959 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20160811-20160904/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:41,960 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a68910>\n",
      "2023-02-22 21:51:41,960 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a6bc40> options\n",
      "2023-02-22 21:51:41,961 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a6bc40>.\n",
      "2023-02-22 21:51:41,963 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:41,963 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a68910>\n",
      "2023-02-22 21:51:41,974 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:41,977 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a7a520>\n",
      "2023-02-22 21:51:41,979 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:41,980 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:41,981 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a6bc40> created\n",
      "2023-02-22 21:51:41,982 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:41,984 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:41,984 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a6bc40>.\n",
      "2023-02-22 21:51:41,985 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a7a520>\n",
      "2023-02-22 21:51:41,986 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a7a520>\n",
      "2023-02-22 21:51:41,987 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a6bc40> options\n",
      "2023-02-22 21:51:41,987 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a6bc40>.\n",
      "2023-02-22 21:51:41,988 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:41,988 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a7a520>\n",
      "2023-02-22 21:51:42,000 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:42,002 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:42,003 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:42,004 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:42,004 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:42,005 - rasterio._io - DEBUG - Window: Window(col_off=12055, row_off=2618, width=325, height=217)\n",
      "2023-02-22 21:51:42,007 - rasterio._io - DEBUG - IO window xoff=12055.0 yoff=2618.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:42,236 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a75610>\n",
      "2023-02-22 21:51:42,237 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:42,238 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:42,238 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a757c0> created\n",
      "2023-02-22 21:51:42,239 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:42,240 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:42,241 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a757c0>.\n",
      "2023-02-22 21:51:42,241 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a75610>\n",
      "2023-02-22 21:51:42,243 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:42,245 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:42,246 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170725-20170806/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:42,247 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a75610>\n",
      "2023-02-22 21:51:42,247 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a757c0> options\n",
      "2023-02-22 21:51:42,248 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a757c0>.\n",
      "2023-02-22 21:51:42,248 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:42,249 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a75610>\n",
      "2023-02-22 21:51:42,259 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:42,262 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a800a0>\n",
      "2023-02-22 21:51:42,263 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:42,264 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:42,265 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a84130> created\n",
      "2023-02-22 21:51:42,266 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:42,267 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:42,268 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a84130>.\n",
      "2023-02-22 21:51:42,269 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a800a0>\n",
      "2023-02-22 21:51:42,270 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a800a0>\n",
      "2023-02-22 21:51:42,271 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a84130> options\n",
      "2023-02-22 21:51:42,271 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a84130>.\n",
      "2023-02-22 21:51:42,272 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:42,272 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a800a0>\n",
      "2023-02-22 21:51:42,284 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:42,286 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:42,287 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:42,287 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:42,288 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:42,289 - rasterio._io - DEBUG - Window: Window(col_off=11892, row_off=2649, width=325, height=217)\n",
      "2023-02-22 21:51:42,289 - rasterio._io - DEBUG - IO window xoff=11892.0 yoff=2649.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:42,557 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a62340>\n",
      "2023-02-22 21:51:42,558 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:42,559 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:42,559 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a62580> created\n",
      "2023-02-22 21:51:42,560 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:42,561 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:42,561 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a62580>.\n",
      "2023-02-22 21:51:42,562 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a62340>\n",
      "2023-02-22 21:51:42,563 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:42,566 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:42,566 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170725-20170818/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:42,567 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a62340>\n",
      "2023-02-22 21:51:42,568 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a62580> options\n",
      "2023-02-22 21:51:42,569 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a62580>.\n",
      "2023-02-22 21:51:42,570 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:42,571 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a62340>\n",
      "2023-02-22 21:51:42,582 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:42,585 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a72220>\n",
      "2023-02-22 21:51:42,586 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:42,587 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:42,587 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a843d0> created\n",
      "2023-02-22 21:51:42,588 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:42,589 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:42,591 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a843d0>.\n",
      "2023-02-22 21:51:42,591 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a72220>\n",
      "2023-02-22 21:51:42,592 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a72220>\n",
      "2023-02-22 21:51:42,593 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a843d0> options\n",
      "2023-02-22 21:51:42,593 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a843d0>.\n",
      "2023-02-22 21:51:42,595 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:42,596 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a72220>\n",
      "2023-02-22 21:51:42,607 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:42,608 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:42,609 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:42,610 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:42,611 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:42,611 - rasterio._io - DEBUG - Window: Window(col_off=11892, row_off=2649, width=325, height=217)\n",
      "2023-02-22 21:51:42,612 - rasterio._io - DEBUG - IO window xoff=11892.0 yoff=2649.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:42,871 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a4c2e0>\n",
      "2023-02-22 21:51:42,872 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:42,873 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:42,874 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a75a00> created\n",
      "2023-02-22 21:51:42,876 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:42,877 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:42,878 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a75a00>.\n",
      "2023-02-22 21:51:42,879 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a4c2e0>\n",
      "2023-02-22 21:51:42,879 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:42,882 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:42,883 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170806-20170818/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:42,884 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a4c2e0>\n",
      "2023-02-22 21:51:42,885 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a75a00> options\n",
      "2023-02-22 21:51:42,885 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a75a00>.\n",
      "2023-02-22 21:51:42,886 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:42,887 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a4c2e0>\n",
      "2023-02-22 21:51:42,898 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:42,902 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a75be0>\n",
      "2023-02-22 21:51:42,903 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:42,904 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:42,905 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a68910> created\n",
      "2023-02-22 21:51:42,906 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:42,908 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:42,909 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a68910>.\n",
      "2023-02-22 21:51:42,910 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a75be0>\n",
      "2023-02-22 21:51:42,911 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a75be0>\n",
      "2023-02-22 21:51:42,912 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a68910> options\n",
      "2023-02-22 21:51:42,912 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a68910>.\n",
      "2023-02-22 21:51:42,913 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:42,914 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a75be0>\n",
      "2023-02-22 21:51:42,926 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:42,929 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:42,930 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:42,931 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:42,932 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:42,933 - rasterio._io - DEBUG - Window: Window(col_off=11902, row_off=2656, width=325, height=217)\n",
      "2023-02-22 21:51:42,934 - rasterio._io - DEBUG - IO window xoff=11902.0 yoff=2656.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:43,214 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a57940>\n",
      "2023-02-22 21:51:43,215 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:43,216 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:43,217 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a64490> created\n",
      "2023-02-22 21:51:43,218 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:43,220 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:43,220 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a64490>.\n",
      "2023-02-22 21:51:43,221 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a57940>\n",
      "2023-02-22 21:51:43,222 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:43,224 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:43,225 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170806-20170830/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:43,226 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a57940>\n",
      "2023-02-22 21:51:43,227 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a64490> options\n",
      "2023-02-22 21:51:43,228 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a64490>.\n",
      "2023-02-22 21:51:43,228 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:43,229 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a57940>\n",
      "2023-02-22 21:51:43,243 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:43,247 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a522e0>\n",
      "2023-02-22 21:51:43,247 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:43,248 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:43,249 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a64490> created\n",
      "2023-02-22 21:51:43,251 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:43,251 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:43,252 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a64490>.\n",
      "2023-02-22 21:51:43,253 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a522e0>\n",
      "2023-02-22 21:51:43,254 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a522e0>\n",
      "2023-02-22 21:51:43,255 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a64490> options\n",
      "2023-02-22 21:51:43,256 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a64490>.\n",
      "2023-02-22 21:51:43,256 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:43,257 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a522e0>\n",
      "2023-02-22 21:51:43,269 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:43,270 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:43,271 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:43,272 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:43,273 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:43,273 - rasterio._io - DEBUG - Window: Window(col_off=11902, row_off=2656, width=325, height=217)\n",
      "2023-02-22 21:51:43,274 - rasterio._io - DEBUG - IO window xoff=11902.0 yoff=2656.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:43,516 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a06220>\n",
      "2023-02-22 21:51:43,517 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:43,517 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:43,519 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a52610> created\n",
      "2023-02-22 21:51:43,520 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:43,520 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:43,521 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a52610>.\n",
      "2023-02-22 21:51:43,522 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a06220>\n",
      "2023-02-22 21:51:43,523 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:43,525 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:43,526 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170818-20170830/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:43,526 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a06220>\n",
      "2023-02-22 21:51:43,527 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a52610> options\n",
      "2023-02-22 21:51:43,528 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a52610>.\n",
      "2023-02-22 21:51:43,528 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:43,529 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a06220>\n",
      "2023-02-22 21:51:43,539 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:43,543 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a2bd00>\n",
      "2023-02-22 21:51:43,544 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:43,544 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:43,545 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a06220> created\n",
      "2023-02-22 21:51:43,546 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:43,547 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:43,547 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a06220>.\n",
      "2023-02-22 21:51:43,548 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a2bd00>\n",
      "2023-02-22 21:51:43,549 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a2bd00>\n",
      "2023-02-22 21:51:43,549 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a06220> options\n",
      "2023-02-22 21:51:43,552 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a06220>.\n",
      "2023-02-22 21:51:43,552 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:43,553 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a2bd00>\n",
      "2023-02-22 21:51:43,565 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:43,567 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:43,567 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:43,568 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:43,569 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:43,570 - rasterio._io - DEBUG - Window: Window(col_off=11893, row_off=2651, width=325, height=217)\n",
      "2023-02-22 21:51:43,571 - rasterio._io - DEBUG - IO window xoff=11893.0 yoff=2651.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:43,804 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a2bbb0>\n",
      "2023-02-22 21:51:43,805 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:43,805 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:43,806 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a52190> created\n",
      "2023-02-22 21:51:43,807 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:43,808 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:43,809 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a52190>.\n",
      "2023-02-22 21:51:43,810 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a2bbb0>\n",
      "2023-02-22 21:51:43,811 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:43,813 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:43,814 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170818-20170911/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:43,815 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a2bbb0>\n",
      "2023-02-22 21:51:43,816 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a52190> options\n",
      "2023-02-22 21:51:43,817 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a52190>.\n",
      "2023-02-22 21:51:43,817 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:43,818 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a2bbb0>\n",
      "2023-02-22 21:51:43,828 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:43,831 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a06700>\n",
      "2023-02-22 21:51:43,832 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:43,833 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:43,833 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2a0a0> created\n",
      "2023-02-22 21:51:43,835 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:43,835 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:43,837 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2a0a0>.\n",
      "2023-02-22 21:51:43,838 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a06700>\n",
      "2023-02-22 21:51:43,839 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a06700>\n",
      "2023-02-22 21:51:43,839 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2a0a0> options\n",
      "2023-02-22 21:51:43,840 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2a0a0>.\n",
      "2023-02-22 21:51:43,840 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:43,841 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a06700>\n",
      "2023-02-22 21:51:43,853 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:43,854 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:43,856 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:43,857 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:43,857 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:43,858 - rasterio._io - DEBUG - Window: Window(col_off=11893, row_off=2651, width=325, height=217)\n",
      "2023-02-22 21:51:43,858 - rasterio._io - DEBUG - IO window xoff=11893.0 yoff=2651.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:44,106 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a06850>\n",
      "2023-02-22 21:51:44,107 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:44,108 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:44,109 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a06f70> created\n",
      "2023-02-22 21:51:44,110 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:44,112 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:44,113 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a06f70>.\n",
      "2023-02-22 21:51:44,114 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a06850>\n",
      "2023-02-22 21:51:44,115 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:44,117 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:44,118 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20170830-20170911/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:44,119 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a06850>\n",
      "2023-02-22 21:51:44,120 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a06f70> options\n",
      "2023-02-22 21:51:44,121 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a06f70>.\n",
      "2023-02-22 21:51:44,122 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:44,123 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a06850>\n",
      "2023-02-22 21:51:44,133 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:44,137 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3c580>\n",
      "2023-02-22 21:51:44,139 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:44,139 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:44,141 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a55bb0> created\n",
      "2023-02-22 21:51:44,142 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:44,143 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:44,143 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a55bb0>.\n",
      "2023-02-22 21:51:44,144 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3c580>\n",
      "2023-02-22 21:51:44,145 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3c580>\n",
      "2023-02-22 21:51:44,146 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a55bb0> options\n",
      "2023-02-22 21:51:44,149 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a55bb0>.\n",
      "2023-02-22 21:51:44,150 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:44,151 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3c580>\n",
      "2023-02-22 21:51:44,163 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:44,164 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:44,165 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:44,166 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:44,167 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:44,168 - rasterio._io - DEBUG - Window: Window(col_off=11888, row_off=2649, width=325, height=217)\n",
      "2023-02-22 21:51:44,169 - rasterio._io - DEBUG - IO window xoff=11888.0 yoff=2649.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:44,429 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3c190>\n",
      "2023-02-22 21:51:44,431 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:44,431 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:44,433 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a3c1f0> created\n",
      "2023-02-22 21:51:44,434 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:44,435 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:44,436 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a3c1f0>.\n",
      "2023-02-22 21:51:44,437 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3c190>\n",
      "2023-02-22 21:51:44,438 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:44,441 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:44,443 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180720-20180801/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:44,443 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3c190>\n",
      "2023-02-22 21:51:44,444 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a3c1f0> options\n",
      "2023-02-22 21:51:44,445 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a3c1f0>.\n",
      "2023-02-22 21:51:44,446 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:44,446 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3c190>\n",
      "2023-02-22 21:51:44,458 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:44,463 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3cb50>\n",
      "2023-02-22 21:51:44,464 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:44,465 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:44,466 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a3cbb0> created\n",
      "2023-02-22 21:51:44,468 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:44,469 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:44,471 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a3cbb0>.\n",
      "2023-02-22 21:51:44,472 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3cb50>\n",
      "2023-02-22 21:51:44,472 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3cb50>\n",
      "2023-02-22 21:51:44,473 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a3cbb0> options\n",
      "2023-02-22 21:51:44,474 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a3cbb0>.\n",
      "2023-02-22 21:51:44,476 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:44,476 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3cb50>\n",
      "2023-02-22 21:51:44,493 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:44,494 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:44,495 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:44,496 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:44,496 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:44,497 - rasterio._io - DEBUG - Window: Window(col_off=11888, row_off=2650, width=325, height=217)\n",
      "2023-02-22 21:51:44,498 - rasterio._io - DEBUG - IO window xoff=11888.0 yoff=2650.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:44,742 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:44,744 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:44,745 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:44,745 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a3cd60> created\n",
      "2023-02-22 21:51:44,747 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:44,747 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:44,748 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a3cd60>.\n",
      "2023-02-22 21:51:44,749 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:44,749 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:44,752 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:44,752 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180720-20180813/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:44,753 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:44,753 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a3cd60> options\n",
      "2023-02-22 21:51:44,755 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a3cd60>.\n",
      "2023-02-22 21:51:44,755 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:44,756 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:44,766 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:44,769 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a277f0>\n",
      "2023-02-22 21:51:44,770 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:44,771 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:44,772 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2be50> created\n",
      "2023-02-22 21:51:44,773 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:44,774 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:44,775 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2be50>.\n",
      "2023-02-22 21:51:44,776 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a277f0>\n",
      "2023-02-22 21:51:44,777 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a277f0>\n",
      "2023-02-22 21:51:44,778 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2be50> options\n",
      "2023-02-22 21:51:44,779 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2be50>.\n",
      "2023-02-22 21:51:44,779 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:44,780 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a277f0>\n",
      "2023-02-22 21:51:44,792 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:44,792 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:44,793 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:44,794 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:44,794 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:44,795 - rasterio._io - DEBUG - Window: Window(col_off=11888, row_off=2650, width=325, height=217)\n",
      "2023-02-22 21:51:44,796 - rasterio._io - DEBUG - IO window xoff=11888.0 yoff=2650.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:45,046 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3c220>\n",
      "2023-02-22 21:51:45,047 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,048 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,049 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a3c940> created\n",
      "2023-02-22 21:51:45,050 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,051 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,051 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a3c940>.\n",
      "2023-02-22 21:51:45,052 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3c220>\n",
      "2023-02-22 21:51:45,053 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:45,056 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:45,056 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180801-20180813/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:45,057 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3c220>\n",
      "2023-02-22 21:51:45,058 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a3c940> options\n",
      "2023-02-22 21:51:45,059 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a3c940>.\n",
      "2023-02-22 21:51:45,059 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,061 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3c220>\n",
      "2023-02-22 21:51:45,070 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:45,073 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:45,074 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,075 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,076 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a1ff70> created\n",
      "2023-02-22 21:51:45,077 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,077 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,079 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a1ff70>.\n",
      "2023-02-22 21:51:45,079 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:45,080 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:45,081 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a1ff70> options\n",
      "2023-02-22 21:51:45,082 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a1ff70>.\n",
      "2023-02-22 21:51:45,083 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,084 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:45,097 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:45,099 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:45,099 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:45,100 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:45,101 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:45,102 - rasterio._io - DEBUG - Window: Window(col_off=11882, row_off=2650, width=325, height=217)\n",
      "2023-02-22 21:51:45,103 - rasterio._io - DEBUG - IO window xoff=11882.0 yoff=2650.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:45,332 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a1f280>\n",
      "2023-02-22 21:51:45,333 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,334 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,334 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a52400> created\n",
      "2023-02-22 21:51:45,335 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,336 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,336 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a52400>.\n",
      "2023-02-22 21:51:45,337 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a1f280>\n",
      "2023-02-22 21:51:45,339 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:45,341 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:45,342 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180801-20180825/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:45,343 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a1f280>\n",
      "2023-02-22 21:51:45,343 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a52400> options\n",
      "2023-02-22 21:51:45,344 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a52400>.\n",
      "2023-02-22 21:51:45,345 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,346 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a1f280>\n",
      "2023-02-22 21:51:45,361 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:45,366 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a6a7c0>\n",
      "2023-02-22 21:51:45,367 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,367 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,368 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2b160> created\n",
      "2023-02-22 21:51:45,369 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,370 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,371 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2b160>.\n",
      "2023-02-22 21:51:45,372 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a6a7c0>\n",
      "2023-02-22 21:51:45,373 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a6a7c0>\n",
      "2023-02-22 21:51:45,373 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2b160> options\n",
      "2023-02-22 21:51:45,376 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2b160>.\n",
      "2023-02-22 21:51:45,377 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,378 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a6a7c0>\n",
      "2023-02-22 21:51:45,391 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:45,392 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:45,393 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:45,393 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:45,394 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:45,396 - rasterio._io - DEBUG - Window: Window(col_off=11882, row_off=2650, width=325, height=217)\n",
      "2023-02-22 21:51:45,397 - rasterio._io - DEBUG - IO window xoff=11882.0 yoff=2650.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:45,630 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,631 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,631 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,632 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a9cf70> created\n",
      "2023-02-22 21:51:45,633 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,635 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,635 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a9cf70>.\n",
      "2023-02-22 21:51:45,636 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,637 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:45,640 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:45,641 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180813-20180825/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:45,641 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,642 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a9cf70> options\n",
      "2023-02-22 21:51:45,643 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a9cf70>.\n",
      "2023-02-22 21:51:45,644 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,644 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,655 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:45,658 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3cc10>\n",
      "2023-02-22 21:51:45,659 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,659 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,660 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a6a550> created\n",
      "2023-02-22 21:51:45,661 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,663 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,663 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a6a550>.\n",
      "2023-02-22 21:51:45,664 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3cc10>\n",
      "2023-02-22 21:51:45,665 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3cc10>\n",
      "2023-02-22 21:51:45,665 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a6a550> options\n",
      "2023-02-22 21:51:45,666 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a6a550>.\n",
      "2023-02-22 21:51:45,667 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,667 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3cc10>\n",
      "2023-02-22 21:51:45,680 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:45,681 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:45,682 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:45,682 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:45,683 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:45,683 - rasterio._io - DEBUG - Window: Window(col_off=12072, row_off=2620, width=325, height=217)\n",
      "2023-02-22 21:51:45,684 - rasterio._io - DEBUG - IO window xoff=12072.0 yoff=2620.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:45,922 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,923 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,924 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,925 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2ae50> created\n",
      "2023-02-22 21:51:45,926 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,927 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,928 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2ae50>.\n",
      "2023-02-22 21:51:45,929 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,932 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:45,935 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:45,936 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180813-20180906/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:45,937 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,938 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2ae50> options\n",
      "2023-02-22 21:51:45,939 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2ae50>.\n",
      "2023-02-22 21:51:45,940 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,941 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a7a640>\n",
      "2023-02-22 21:51:45,952 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:45,956 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:45,957 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:45,959 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:45,959 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a1f970> created\n",
      "2023-02-22 21:51:45,961 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:45,962 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:45,963 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a1f970>.\n",
      "2023-02-22 21:51:45,964 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:45,965 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:45,968 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a1f970> options\n",
      "2023-02-22 21:51:45,969 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a1f970>.\n",
      "2023-02-22 21:51:45,970 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:45,971 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3c1f0>\n",
      "2023-02-22 21:51:45,982 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:45,985 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:45,986 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:45,987 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:45,988 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:45,989 - rasterio._io - DEBUG - Window: Window(col_off=12072, row_off=2620, width=325, height=217)\n",
      "2023-02-22 21:51:45,992 - rasterio._io - DEBUG - IO window xoff=12072.0 yoff=2620.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:46,222 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a1f2e0>\n",
      "2023-02-22 21:51:46,223 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:46,225 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:46,225 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a1fa00> created\n",
      "2023-02-22 21:51:46,227 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:46,228 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:46,229 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a1fa00>.\n",
      "2023-02-22 21:51:46,230 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a1f2e0>\n",
      "2023-02-22 21:51:46,231 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:46,233 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:46,234 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20180825-20180906/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:46,235 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a1f2e0>\n",
      "2023-02-22 21:51:46,236 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a1fa00> options\n",
      "2023-02-22 21:51:46,237 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a1fa00>.\n",
      "2023-02-22 21:51:46,237 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:46,238 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a1f2e0>\n",
      "2023-02-22 21:51:46,249 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:46,253 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a270d0>\n",
      "2023-02-22 21:51:46,255 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:46,256 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:46,256 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a3c130> created\n",
      "2023-02-22 21:51:46,258 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:46,259 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:46,260 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a3c130>.\n",
      "2023-02-22 21:51:46,261 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a270d0>\n",
      "2023-02-22 21:51:46,261 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a270d0>\n",
      "2023-02-22 21:51:46,263 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a3c130> options\n",
      "2023-02-22 21:51:46,263 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a3c130>.\n",
      "2023-02-22 21:51:46,264 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:46,265 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a270d0>\n",
      "2023-02-22 21:51:46,279 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:46,280 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:46,281 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:46,282 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:46,283 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:46,284 - rasterio._io - DEBUG - Window: Window(col_off=12072, row_off=2617, width=325, height=217)\n",
      "2023-02-22 21:51:46,286 - rasterio._io - DEBUG - IO window xoff=12072.0 yoff=2617.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:46,510 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a27130>\n",
      "2023-02-22 21:51:46,511 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:46,512 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:46,513 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a7a820> created\n",
      "2023-02-22 21:51:46,514 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:46,515 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:46,515 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a7a820>.\n",
      "2023-02-22 21:51:46,516 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a27130>\n",
      "2023-02-22 21:51:46,517 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:46,521 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:46,521 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190715-20190727/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:46,522 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a27130>\n",
      "2023-02-22 21:51:46,523 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a7a820> options\n",
      "2023-02-22 21:51:46,523 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a7a820>.\n",
      "2023-02-22 21:51:46,524 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:46,525 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a27130>\n",
      "2023-02-22 21:51:46,535 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:46,538 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:46,539 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:46,540 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:46,540 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a6cb50> created\n",
      "2023-02-22 21:51:46,541 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:46,543 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:46,544 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a6cb50>.\n",
      "2023-02-22 21:51:46,545 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:46,546 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:46,547 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a6cb50> options\n",
      "2023-02-22 21:51:46,548 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a6cb50>.\n",
      "2023-02-22 21:51:46,548 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:46,549 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a1fb80>\n",
      "2023-02-22 21:51:46,560 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:46,561 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:46,562 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:46,564 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:46,565 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:46,565 - rasterio._io - DEBUG - Window: Window(col_off=12075, row_off=2624, width=325, height=217)\n",
      "2023-02-22 21:51:46,566 - rasterio._io - DEBUG - IO window xoff=12075.0 yoff=2624.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:46,794 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a1f790>\n",
      "2023-02-22 21:51:46,795 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:46,795 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:46,796 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a27340> created\n",
      "2023-02-22 21:51:46,797 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:46,797 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:46,798 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a27340>.\n",
      "2023-02-22 21:51:46,799 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a1f790>\n",
      "2023-02-22 21:51:46,800 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:46,803 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:46,803 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190715-20190808/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:46,805 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a1f790>\n",
      "2023-02-22 21:51:46,805 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a27340> options\n",
      "2023-02-22 21:51:46,806 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a27340>.\n",
      "2023-02-22 21:51:46,807 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:46,807 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a1f790>\n",
      "2023-02-22 21:51:46,817 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:46,821 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a579a0>\n",
      "2023-02-22 21:51:46,821 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:46,822 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:46,823 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a840d0> created\n",
      "2023-02-22 21:51:46,824 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:46,824 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:46,825 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a840d0>.\n",
      "2023-02-22 21:51:46,826 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a579a0>\n",
      "2023-02-22 21:51:46,827 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a579a0>\n",
      "2023-02-22 21:51:46,827 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a840d0> options\n",
      "2023-02-22 21:51:46,828 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a840d0>.\n",
      "2023-02-22 21:51:46,829 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:46,829 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a579a0>\n",
      "2023-02-22 21:51:46,841 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:46,844 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:46,845 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:46,845 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:46,846 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:46,847 - rasterio._io - DEBUG - Window: Window(col_off=747, row_off=3596, width=325, height=217)\n",
      "2023-02-22 21:51:46,847 - rasterio._io - DEBUG - IO window xoff=747.0 yoff=3596.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:47,014 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65ad3250>\n",
      "2023-02-22 21:51:47,015 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,016 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,017 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a86df0> created\n",
      "2023-02-22 21:51:47,018 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,019 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,020 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a86df0>.\n",
      "2023-02-22 21:51:47,020 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65ad3250>\n",
      "2023-02-22 21:51:47,021 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:47,024 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:47,025 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190727-20190808/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:47,026 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65ad3250>\n",
      "2023-02-22 21:51:47,026 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a86df0> options\n",
      "2023-02-22 21:51:47,027 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a86df0>.\n",
      "2023-02-22 21:51:47,027 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,029 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65ad3250>\n",
      "2023-02-22 21:51:47,039 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:47,042 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a4cb20>\n",
      "2023-02-22 21:51:47,043 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,043 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,044 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2bf40> created\n",
      "2023-02-22 21:51:47,045 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,045 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,046 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2bf40>.\n",
      "2023-02-22 21:51:47,047 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a4cb20>\n",
      "2023-02-22 21:51:47,047 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a4cb20>\n",
      "2023-02-22 21:51:47,048 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2bf40> options\n",
      "2023-02-22 21:51:47,048 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2bf40>.\n",
      "2023-02-22 21:51:47,049 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,052 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a4cb20>\n",
      "2023-02-22 21:51:47,064 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:47,065 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:47,066 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:47,067 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:47,067 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:47,068 - rasterio._io - DEBUG - Window: Window(col_off=738, row_off=3599, width=325, height=217)\n",
      "2023-02-22 21:51:47,069 - rasterio._io - DEBUG - IO window xoff=738.0 yoff=3599.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:47,230 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a4cca0>\n",
      "2023-02-22 21:51:47,231 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,231 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,232 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a4ca30> created\n",
      "2023-02-22 21:51:47,233 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,233 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,235 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a4ca30>.\n",
      "2023-02-22 21:51:47,236 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a4cca0>\n",
      "2023-02-22 21:51:47,236 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:47,239 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:47,240 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190727-20190820/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:47,240 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a4cca0>\n",
      "2023-02-22 21:51:47,241 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a4ca30> options\n",
      "2023-02-22 21:51:47,242 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a4ca30>.\n",
      "2023-02-22 21:51:47,242 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,243 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a4cca0>\n",
      "2023-02-22 21:51:47,254 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:47,257 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a3c850>\n",
      "2023-02-22 21:51:47,257 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,258 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,259 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a6bd60> created\n",
      "2023-02-22 21:51:47,260 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,261 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,262 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a6bd60>.\n",
      "2023-02-22 21:51:47,263 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a3c850>\n",
      "2023-02-22 21:51:47,264 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a3c850>\n",
      "2023-02-22 21:51:47,264 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a6bd60> options\n",
      "2023-02-22 21:51:47,265 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a6bd60>.\n",
      "2023-02-22 21:51:47,265 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,266 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a3c850>\n",
      "2023-02-22 21:51:47,278 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:47,279 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:47,279 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:47,280 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:47,281 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:47,281 - rasterio._io - DEBUG - Window: Window(col_off=738, row_off=3599, width=325, height=217)\n",
      "2023-02-22 21:51:47,284 - rasterio._io - DEBUG - IO window xoff=738.0 yoff=3599.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:47,448 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a479a0>\n",
      "2023-02-22 21:51:47,449 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,450 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,451 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a47d00> created\n",
      "2023-02-22 21:51:47,452 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,453 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,453 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a47d00>.\n",
      "2023-02-22 21:51:47,454 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a479a0>\n",
      "2023-02-22 21:51:47,455 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:47,458 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:47,459 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190808-20190820/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:47,459 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a479a0>\n",
      "2023-02-22 21:51:47,460 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a47d00> options\n",
      "2023-02-22 21:51:47,460 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a47d00>.\n",
      "2023-02-22 21:51:47,462 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,463 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a479a0>\n",
      "2023-02-22 21:51:47,473 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:47,476 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a62760>\n",
      "2023-02-22 21:51:47,477 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,478 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,478 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a1ff10> created\n",
      "2023-02-22 21:51:47,479 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,480 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,481 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a1ff10>.\n",
      "2023-02-22 21:51:47,481 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a62760>\n",
      "2023-02-22 21:51:47,482 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a62760>\n",
      "2023-02-22 21:51:47,483 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a1ff10> options\n",
      "2023-02-22 21:51:47,483 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a1ff10>.\n",
      "2023-02-22 21:51:47,484 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,484 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a62760>\n",
      "2023-02-22 21:51:47,496 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:47,497 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:47,500 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:47,501 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:47,501 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:47,502 - rasterio._io - DEBUG - Window: Window(col_off=913, row_off=3626, width=325, height=217)\n",
      "2023-02-22 21:51:47,503 - rasterio._io - DEBUG - IO window xoff=913.0 yoff=3626.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:47,870 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a6bc40>\n",
      "2023-02-22 21:51:47,871 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,872 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,872 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a47580> created\n",
      "2023-02-22 21:51:47,873 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,875 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,876 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a47580>.\n",
      "2023-02-22 21:51:47,876 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a6bc40>\n",
      "2023-02-22 21:51:47,877 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:47,882 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:47,882 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190808-20190901/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:47,883 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a6bc40>\n",
      "2023-02-22 21:51:47,884 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a47580> options\n",
      "2023-02-22 21:51:47,884 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a47580>.\n",
      "2023-02-22 21:51:47,886 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,886 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a6bc40>\n",
      "2023-02-22 21:51:47,896 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:47,899 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a98f40>\n",
      "2023-02-22 21:51:47,900 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:47,900 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:47,901 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a89d00> created\n",
      "2023-02-22 21:51:47,902 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:47,903 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:47,904 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a89d00>.\n",
      "2023-02-22 21:51:47,905 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a98f40>\n",
      "2023-02-22 21:51:47,905 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a98f40>\n",
      "2023-02-22 21:51:47,907 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a89d00> options\n",
      "2023-02-22 21:51:47,907 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a89d00>.\n",
      "2023-02-22 21:51:47,908 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:47,909 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a98f40>\n",
      "2023-02-22 21:51:47,920 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:47,922 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:47,923 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:47,923 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:47,924 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:47,924 - rasterio._io - DEBUG - Window: Window(col_off=913, row_off=3626, width=325, height=217)\n",
      "2023-02-22 21:51:47,925 - rasterio._io - DEBUG - IO window xoff=913.0 yoff=3626.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:48,191 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a98d30>\n",
      "2023-02-22 21:51:48,192 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:48,192 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:48,193 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a06d30> created\n",
      "2023-02-22 21:51:48,195 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:48,195 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:48,196 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a06d30>.\n",
      "2023-02-22 21:51:48,196 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a98d30>\n",
      "2023-02-22 21:51:48,197 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:48,201 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:48,202 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190820-20190901/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:48,202 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a98d30>\n",
      "2023-02-22 21:51:48,203 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a06d30> options\n",
      "2023-02-22 21:51:48,203 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a06d30>.\n",
      "2023-02-22 21:51:48,204 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:48,205 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a98d30>\n",
      "2023-02-22 21:51:48,215 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:48,218 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a06bb0>\n",
      "2023-02-22 21:51:48,219 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:48,219 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:48,220 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a4c790> created\n",
      "2023-02-22 21:51:48,221 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:48,222 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:48,223 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a4c790>.\n",
      "2023-02-22 21:51:48,224 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a06bb0>\n",
      "2023-02-22 21:51:48,225 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a06bb0>\n",
      "2023-02-22 21:51:48,225 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a4c790> options\n",
      "2023-02-22 21:51:48,227 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a4c790>.\n",
      "2023-02-22 21:51:48,227 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:48,228 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a06bb0>\n",
      "2023-02-22 21:51:48,239 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:48,240 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:48,241 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:48,241 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:48,242 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:48,244 - rasterio._io - DEBUG - Window: Window(col_off=920, row_off=3625, width=325, height=217)\n",
      "2023-02-22 21:51:48,244 - rasterio._io - DEBUG - IO window xoff=920.0 yoff=3625.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:48,479 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,480 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:48,481 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:48,481 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a061c0> created\n",
      "2023-02-22 21:51:48,483 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:48,483 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:48,484 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a061c0>.\n",
      "2023-02-22 21:51:48,485 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,486 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:48,489 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:48,490 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190820-20190913/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:48,491 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,492 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a061c0> options\n",
      "2023-02-22 21:51:48,492 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a061c0>.\n",
      "2023-02-22 21:51:48,493 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:48,494 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,504 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:48,508 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a34040>\n",
      "2023-02-22 21:51:48,509 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:48,509 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:48,510 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a34fd0> created\n",
      "2023-02-22 21:51:48,511 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:48,512 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:48,513 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a34fd0>.\n",
      "2023-02-22 21:51:48,514 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a34040>\n",
      "2023-02-22 21:51:48,515 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a34040>\n",
      "2023-02-22 21:51:48,515 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a34fd0> options\n",
      "2023-02-22 21:51:48,516 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a34fd0>.\n",
      "2023-02-22 21:51:48,517 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:48,517 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a34040>\n",
      "2023-02-22 21:51:48,529 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:48,530 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:48,531 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:48,533 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:48,534 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:48,535 - rasterio._io - DEBUG - Window: Window(col_off=920, row_off=3625, width=325, height=217)\n",
      "2023-02-22 21:51:48,535 - rasterio._io - DEBUG - IO window xoff=920.0 yoff=3625.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:48,762 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,763 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:48,763 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:48,764 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a68a30> created\n",
      "2023-02-22 21:51:48,765 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:48,766 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:48,768 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a68a30>.\n",
      "2023-02-22 21:51:48,768 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,769 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:48,772 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:48,773 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20190901-20190913/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:48,773 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,774 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a68a30> options\n",
      "2023-02-22 21:51:48,775 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a68a30>.\n",
      "2023-02-22 21:51:48,776 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:48,777 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a4cc10>\n",
      "2023-02-22 21:51:48,786 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:48,789 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a98910>\n",
      "2023-02-22 21:51:48,790 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:48,791 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:48,792 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a06e50> created\n",
      "2023-02-22 21:51:48,793 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:48,794 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:48,794 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a06e50>.\n",
      "2023-02-22 21:51:48,795 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a98910>\n",
      "2023-02-22 21:51:48,796 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a98910>\n",
      "2023-02-22 21:51:48,797 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a06e50> options\n",
      "2023-02-22 21:51:48,797 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a06e50>.\n",
      "2023-02-22 21:51:48,799 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:48,800 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a98910>\n",
      "2023-02-22 21:51:48,811 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:48,812 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:48,813 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:48,814 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:48,815 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:48,815 - rasterio._io - DEBUG - Window: Window(col_off=919, row_off=3618, width=325, height=217)\n",
      "2023-02-22 21:51:48,816 - rasterio._io - DEBUG - IO window xoff=919.0 yoff=3618.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:49,052 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a346a0>\n",
      "2023-02-22 21:51:49,053 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,054 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,055 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a34490> created\n",
      "2023-02-22 21:51:49,056 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,057 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,058 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a34490>.\n",
      "2023-02-22 21:51:49,059 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a346a0>\n",
      "2023-02-22 21:51:49,060 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:49,075 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:49,076 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200721-20200802/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:49,076 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a346a0>\n",
      "2023-02-22 21:51:49,077 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a34490> options\n",
      "2023-02-22 21:51:49,078 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a34490>.\n",
      "2023-02-22 21:51:49,079 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:49,080 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a346a0>\n",
      "2023-02-22 21:51:49,093 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:49,097 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659f7040>\n",
      "2023-02-22 21:51:49,098 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,099 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,099 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659f7400> created\n",
      "2023-02-22 21:51:49,100 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,101 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,102 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659f7400>.\n",
      "2023-02-22 21:51:49,103 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659f7040>\n",
      "2023-02-22 21:51:49,104 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659f7040>\n",
      "2023-02-22 21:51:49,104 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659f7400> options\n",
      "2023-02-22 21:51:49,105 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659f7400>.\n",
      "2023-02-22 21:51:49,106 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:49,107 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659f7040>\n",
      "2023-02-22 21:51:49,122 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:49,123 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:49,124 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:49,125 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:49,125 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:49,126 - rasterio._io - DEBUG - Window: Window(col_off=921, row_off=3628, width=325, height=217)\n",
      "2023-02-22 21:51:49,127 - rasterio._io - DEBUG - IO window xoff=921.0 yoff=3628.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:49,378 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:49,379 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,379 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,380 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a68970> created\n",
      "2023-02-22 21:51:49,381 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,383 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,384 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a68970>.\n",
      "2023-02-22 21:51:49,384 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:49,385 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:49,388 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:49,389 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200721-20200814/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:49,390 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:49,391 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a68970> options\n",
      "2023-02-22 21:51:49,391 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a68970>.\n",
      "2023-02-22 21:51:49,392 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:49,393 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:49,402 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:49,405 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659f7460>\n",
      "2023-02-22 21:51:49,407 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,407 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,408 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a476a0> created\n",
      "2023-02-22 21:51:49,409 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,410 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,411 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a476a0>.\n",
      "2023-02-22 21:51:49,411 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659f7460>\n",
      "2023-02-22 21:51:49,412 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659f7460>\n",
      "2023-02-22 21:51:49,413 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a476a0> options\n",
      "2023-02-22 21:51:49,413 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a476a0>.\n",
      "2023-02-22 21:51:49,414 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:49,415 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659f7460>\n",
      "2023-02-22 21:51:49,426 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:49,428 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:49,429 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:49,430 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:49,431 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:49,432 - rasterio._io - DEBUG - Window: Window(col_off=921, row_off=3628, width=325, height=217)\n",
      "2023-02-22 21:51:49,432 - rasterio._io - DEBUG - IO window xoff=921.0 yoff=3628.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:49,693 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659c97f0>\n",
      "2023-02-22 21:51:49,694 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,695 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,695 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659c9be0> created\n",
      "2023-02-22 21:51:49,696 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,697 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,698 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659c9be0>.\n",
      "2023-02-22 21:51:49,699 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659c97f0>\n",
      "2023-02-22 21:51:49,700 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:49,703 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:49,704 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200802-20200814/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:49,705 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659c97f0>\n",
      "2023-02-22 21:51:49,705 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659c9be0> options\n",
      "2023-02-22 21:51:49,706 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659c9be0>.\n",
      "2023-02-22 21:51:49,707 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:49,708 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659c97f0>\n",
      "2023-02-22 21:51:49,717 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:49,720 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659fa5e0>\n",
      "2023-02-22 21:51:49,721 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,722 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,723 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659fa640> created\n",
      "2023-02-22 21:51:49,724 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,724 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,726 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659fa640>.\n",
      "2023-02-22 21:51:49,727 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659fa5e0>\n",
      "2023-02-22 21:51:49,727 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659fa5e0>\n",
      "2023-02-22 21:51:49,728 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659fa640> options\n",
      "2023-02-22 21:51:49,729 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659fa640>.\n",
      "2023-02-22 21:51:49,729 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:49,730 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659fa5e0>\n",
      "2023-02-22 21:51:49,742 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:49,744 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:49,745 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:49,745 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:49,746 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:49,747 - rasterio._io - DEBUG - Window: Window(col_off=928, row_off=3621, width=325, height=217)\n",
      "2023-02-22 21:51:49,747 - rasterio._io - DEBUG - IO window xoff=928.0 yoff=3621.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:49,987 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659f7a90>\n",
      "2023-02-22 21:51:49,988 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:49,989 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:49,990 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a620a0> created\n",
      "2023-02-22 21:51:49,991 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:49,993 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:49,994 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a620a0>.\n",
      "2023-02-22 21:51:49,995 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659f7a90>\n",
      "2023-02-22 21:51:49,996 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:49,999 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:50,000 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200802-20200826/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:50,001 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659f7a90>\n",
      "2023-02-22 21:51:50,003 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a620a0> options\n",
      "2023-02-22 21:51:50,004 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a620a0>.\n",
      "2023-02-22 21:51:50,004 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,005 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659f7a90>\n",
      "2023-02-22 21:51:50,016 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:50,020 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659faa30>\n",
      "2023-02-22 21:51:50,021 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,022 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,023 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a6a820> created\n",
      "2023-02-22 21:51:50,024 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,025 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,027 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a6a820>.\n",
      "2023-02-22 21:51:50,028 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659faa30>\n",
      "2023-02-22 21:51:50,030 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659faa30>\n",
      "2023-02-22 21:51:50,031 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a6a820> options\n",
      "2023-02-22 21:51:50,032 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a6a820>.\n",
      "2023-02-22 21:51:50,033 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,034 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659faa30>\n",
      "2023-02-22 21:51:50,045 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:50,048 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:50,049 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:50,050 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:50,051 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:50,051 - rasterio._io - DEBUG - Window: Window(col_off=928, row_off=3621, width=325, height=217)\n",
      "2023-02-22 21:51:50,052 - rasterio._io - DEBUG - IO window xoff=928.0 yoff=3621.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:50,284 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659faac0>\n",
      "2023-02-22 21:51:50,285 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,286 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,287 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a1ff10> created\n",
      "2023-02-22 21:51:50,288 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,289 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,290 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a1ff10>.\n",
      "2023-02-22 21:51:50,291 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659faac0>\n",
      "2023-02-22 21:51:50,292 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:50,295 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:50,296 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200814-20200826/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:50,296 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659faac0>\n",
      "2023-02-22 21:51:50,297 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a1ff10> options\n",
      "2023-02-22 21:51:50,298 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a1ff10>.\n",
      "2023-02-22 21:51:50,299 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,299 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659faac0>\n",
      "2023-02-22 21:51:50,313 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:50,316 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e8670>\n",
      "2023-02-22 21:51:50,317 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,318 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,319 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a1ff10> created\n",
      "2023-02-22 21:51:50,320 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,320 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,322 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a1ff10>.\n",
      "2023-02-22 21:51:50,323 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e8670>\n",
      "2023-02-22 21:51:50,323 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e8670>\n",
      "2023-02-22 21:51:50,324 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a1ff10> options\n",
      "2023-02-22 21:51:50,325 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a1ff10>.\n",
      "2023-02-22 21:51:50,326 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,327 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e8670>\n",
      "2023-02-22 21:51:50,339 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:50,340 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:50,341 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:50,341 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:50,343 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:50,343 - rasterio._io - DEBUG - Window: Window(col_off=918, row_off=3615, width=325, height=217)\n",
      "2023-02-22 21:51:50,344 - rasterio._io - DEBUG - IO window xoff=918.0 yoff=3615.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:50,586 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659fa970>\n",
      "2023-02-22 21:51:50,587 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,588 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,589 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659fa460> created\n",
      "2023-02-22 21:51:50,590 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,591 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,592 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659fa460>.\n",
      "2023-02-22 21:51:50,593 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659fa970>\n",
      "2023-02-22 21:51:50,594 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:50,597 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:50,598 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200814-20200907/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:50,599 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659fa970>\n",
      "2023-02-22 21:51:50,600 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659fa460> options\n",
      "2023-02-22 21:51:50,600 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659fa460>.\n",
      "2023-02-22 21:51:50,601 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,602 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659fa970>\n",
      "2023-02-22 21:51:50,613 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:50,617 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e8a00>\n",
      "2023-02-22 21:51:50,618 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,619 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,620 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a89250> created\n",
      "2023-02-22 21:51:50,621 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,623 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,624 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a89250>.\n",
      "2023-02-22 21:51:50,624 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e8a00>\n",
      "2023-02-22 21:51:50,625 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e8a00>\n",
      "2023-02-22 21:51:50,626 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a89250> options\n",
      "2023-02-22 21:51:50,627 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a89250>.\n",
      "2023-02-22 21:51:50,628 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,630 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e8a00>\n",
      "2023-02-22 21:51:50,642 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:50,644 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:50,645 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:50,646 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:50,647 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:50,647 - rasterio._io - DEBUG - Window: Window(col_off=918, row_off=3615, width=325, height=217)\n",
      "2023-02-22 21:51:50,648 - rasterio._io - DEBUG - IO window xoff=918.0 yoff=3615.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:50,885 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e82b0>\n",
      "2023-02-22 21:51:50,886 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,887 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,889 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659e8370> created\n",
      "2023-02-22 21:51:50,890 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,891 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,892 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659e8370>.\n",
      "2023-02-22 21:51:50,893 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e82b0>\n",
      "2023-02-22 21:51:50,893 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:50,897 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:50,898 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20200826-20200907/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:50,899 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e82b0>\n",
      "2023-02-22 21:51:50,900 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659e8370> options\n",
      "2023-02-22 21:51:50,901 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659e8370>.\n",
      "2023-02-22 21:51:50,902 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,903 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e82b0>\n",
      "2023-02-22 21:51:50,915 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:50,919 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e36a0>\n",
      "2023-02-22 21:51:50,920 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:50,921 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:50,922 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659e3ac0> created\n",
      "2023-02-22 21:51:50,923 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:50,925 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:50,925 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659e3ac0>.\n",
      "2023-02-22 21:51:50,926 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e36a0>\n",
      "2023-02-22 21:51:50,927 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e36a0>\n",
      "2023-02-22 21:51:50,929 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659e3ac0> options\n",
      "2023-02-22 21:51:50,930 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659e3ac0>.\n",
      "2023-02-22 21:51:50,931 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:50,931 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e36a0>\n",
      "2023-02-22 21:51:50,945 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:50,945 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:50,947 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:50,948 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:50,949 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:50,950 - rasterio._io - DEBUG - Window: Window(col_off=919, row_off=3617, width=325, height=217)\n",
      "2023-02-22 21:51:50,951 - rasterio._io - DEBUG - IO window xoff=919.0 yoff=3617.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:51,184 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e33a0>\n",
      "2023-02-22 21:51:51,186 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:51,186 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:51,187 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659e3b20> created\n",
      "2023-02-22 21:51:51,188 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:51,188 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:51,189 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659e3b20>.\n",
      "2023-02-22 21:51:51,190 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e33a0>\n",
      "2023-02-22 21:51:51,192 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:51,194 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:51,195 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210716-20210728/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:51,196 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e33a0>\n",
      "2023-02-22 21:51:51,197 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659e3b20> options\n",
      "2023-02-22 21:51:51,197 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659e3b20>.\n",
      "2023-02-22 21:51:51,198 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:51,199 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e33a0>\n",
      "2023-02-22 21:51:51,209 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:51,212 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659f76a0>\n",
      "2023-02-22 21:51:51,213 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:51,214 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:51,215 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a51640> created\n",
      "2023-02-22 21:51:51,216 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:51,216 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:51,217 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a51640>.\n",
      "2023-02-22 21:51:51,218 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659f76a0>\n",
      "2023-02-22 21:51:51,219 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659f76a0>\n",
      "2023-02-22 21:51:51,219 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a51640> options\n",
      "2023-02-22 21:51:51,220 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a51640>.\n",
      "2023-02-22 21:51:51,221 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:51,223 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659f76a0>\n",
      "2023-02-22 21:51:51,235 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:51,236 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:51,237 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:51,237 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:51,239 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:51,240 - rasterio._io - DEBUG - Window: Window(col_off=916, row_off=3626, width=325, height=217)\n",
      "2023-02-22 21:51:51,240 - rasterio._io - DEBUG - IO window xoff=916.0 yoff=3626.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:51,478 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a620a0>\n",
      "2023-02-22 21:51:51,479 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:51,479 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:51,480 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659faf70> created\n",
      "2023-02-22 21:51:51,481 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:51,482 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:51,483 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659faf70>.\n",
      "2023-02-22 21:51:51,484 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a620a0>\n",
      "2023-02-22 21:51:51,484 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:51,488 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:51,488 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210716-20210809/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:51,489 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a620a0>\n",
      "2023-02-22 21:51:51,490 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659faf70> options\n",
      "2023-02-22 21:51:51,491 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659faf70>.\n",
      "2023-02-22 21:51:51,491 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:51,492 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a620a0>\n",
      "2023-02-22 21:51:51,503 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:51,506 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659d4c70>\n",
      "2023-02-22 21:51:51,507 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:51,508 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:51,509 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659d4cd0> created\n",
      "2023-02-22 21:51:51,510 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:51,511 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:51,512 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659d4cd0>.\n",
      "2023-02-22 21:51:51,512 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659d4c70>\n",
      "2023-02-22 21:51:51,513 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659d4c70>\n",
      "2023-02-22 21:51:51,514 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659d4cd0> options\n",
      "2023-02-22 21:51:51,515 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659d4cd0>.\n",
      "2023-02-22 21:51:51,515 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:51,516 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659d4c70>\n",
      "2023-02-22 21:51:51,528 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:51,529 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:51,530 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:51,532 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:51,532 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:51,533 - rasterio._io - DEBUG - Window: Window(col_off=916, row_off=3626, width=325, height=217)\n",
      "2023-02-22 21:51:51,534 - rasterio._io - DEBUG - IO window xoff=916.0 yoff=3626.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:51,811 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659d4550>\n",
      "2023-02-22 21:51:51,812 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:51,812 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:51,813 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a4cc10> created\n",
      "2023-02-22 21:51:51,814 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:51,815 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:51,816 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a4cc10>.\n",
      "2023-02-22 21:51:51,817 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659d4550>\n",
      "2023-02-22 21:51:51,818 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:51,821 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:51,822 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210728-20210809/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:51,823 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659d4550>\n",
      "2023-02-22 21:51:51,823 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a4cc10> options\n",
      "2023-02-22 21:51:51,824 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a4cc10>.\n",
      "2023-02-22 21:51:51,825 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:51,826 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659d4550>\n",
      "2023-02-22 21:51:51,836 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:51,839 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a89250>\n",
      "2023-02-22 21:51:51,840 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:51,841 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:51,842 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659e3c40> created\n",
      "2023-02-22 21:51:51,843 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:51,843 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:51,844 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659e3c40>.\n",
      "2023-02-22 21:51:51,845 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a89250>\n",
      "2023-02-22 21:51:51,845 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a89250>\n",
      "2023-02-22 21:51:51,846 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659e3c40> options\n",
      "2023-02-22 21:51:51,847 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659e3c40>.\n",
      "2023-02-22 21:51:51,847 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:51,848 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a89250>\n",
      "2023-02-22 21:51:51,860 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:51,863 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:51,864 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:51,865 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:51,865 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:51,866 - rasterio._io - DEBUG - Window: Window(col_off=897, row_off=3628, width=325, height=217)\n",
      "2023-02-22 21:51:51,867 - rasterio._io - DEBUG - IO window xoff=897.0 yoff=3628.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:52,098 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:52,099 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,100 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,102 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659e3ac0> created\n",
      "2023-02-22 21:51:52,103 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,104 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,105 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659e3ac0>.\n",
      "2023-02-22 21:51:52,106 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:52,107 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:52,110 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:52,111 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210728-20210821/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:52,112 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:52,112 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659e3ac0> options\n",
      "2023-02-22 21:51:52,113 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659e3ac0>.\n",
      "2023-02-22 21:51:52,116 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:52,117 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659c9790>\n",
      "2023-02-22 21:51:52,127 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:52,131 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659dcb20>\n",
      "2023-02-22 21:51:52,132 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,133 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,134 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659dcf10> created\n",
      "2023-02-22 21:51:52,136 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,137 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,138 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659dcf10>.\n",
      "2023-02-22 21:51:52,139 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659dcb20>\n",
      "2023-02-22 21:51:52,140 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659dcb20>\n",
      "2023-02-22 21:51:52,141 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659dcf10> options\n",
      "2023-02-22 21:51:52,143 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659dcf10>.\n",
      "2023-02-22 21:51:52,144 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:52,145 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659dcb20>\n",
      "2023-02-22 21:51:52,158 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:52,159 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:52,161 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:52,163 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:52,164 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:52,165 - rasterio._io - DEBUG - Window: Window(col_off=897, row_off=3628, width=325, height=217)\n",
      "2023-02-22 21:51:52,166 - rasterio._io - DEBUG - IO window xoff=897.0 yoff=3628.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:52,396 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659dc160>\n",
      "2023-02-22 21:51:52,397 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,398 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,399 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659dc3a0> created\n",
      "2023-02-22 21:51:52,400 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,402 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,403 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659dc3a0>.\n",
      "2023-02-22 21:51:52,404 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659dc160>\n",
      "2023-02-22 21:51:52,406 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:52,409 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:52,411 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210809-20210821/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:52,412 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659dc160>\n",
      "2023-02-22 21:51:52,412 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659dc3a0> options\n",
      "2023-02-22 21:51:52,413 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659dc3a0>.\n",
      "2023-02-22 21:51:52,415 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:52,416 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659dc160>\n",
      "2023-02-22 21:51:52,426 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:52,430 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a52430>\n",
      "2023-02-22 21:51:52,431 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,432 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,433 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a0cdc9160> created\n",
      "2023-02-22 21:51:52,434 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,437 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,438 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a0cdc9160>.\n",
      "2023-02-22 21:51:52,439 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a52430>\n",
      "2023-02-22 21:51:52,440 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a52430>\n",
      "2023-02-22 21:51:52,441 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a0cdc9160> options\n",
      "2023-02-22 21:51:52,443 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a0cdc9160>.\n",
      "2023-02-22 21:51:52,444 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:52,445 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a52430>\n",
      "2023-02-22 21:51:52,458 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:52,459 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:52,460 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:52,461 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:52,462 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:52,462 - rasterio._io - DEBUG - Window: Window(col_off=917, row_off=3628, width=325, height=217)\n",
      "2023-02-22 21:51:52,463 - rasterio._io - DEBUG - IO window xoff=917.0 yoff=3628.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:52,687 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a516d0>\n",
      "2023-02-22 21:51:52,689 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,689 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,691 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2af40> created\n",
      "2023-02-22 21:51:52,692 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,693 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,694 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2af40>.\n",
      "2023-02-22 21:51:52,695 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a516d0>\n",
      "2023-02-22 21:51:52,696 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:52,700 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:52,701 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210809-20210902/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:52,702 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a516d0>\n",
      "2023-02-22 21:51:52,703 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2af40> options\n",
      "2023-02-22 21:51:52,704 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2af40>.\n",
      "2023-02-22 21:51:52,705 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:52,707 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a516d0>\n",
      "2023-02-22 21:51:52,717 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:52,720 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659d4520>\n",
      "2023-02-22 21:51:52,721 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,722 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,723 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a51190> created\n",
      "2023-02-22 21:51:52,724 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,725 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,726 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a51190>.\n",
      "2023-02-22 21:51:52,727 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659d4520>\n",
      "2023-02-22 21:51:52,730 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659d4520>\n",
      "2023-02-22 21:51:52,731 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a51190> options\n",
      "2023-02-22 21:51:52,732 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a51190>.\n",
      "2023-02-22 21:51:52,734 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:52,735 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659d4520>\n",
      "2023-02-22 21:51:52,746 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:52,748 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:52,749 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:52,750 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:52,751 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:52,752 - rasterio._io - DEBUG - Window: Window(col_off=917, row_off=3628, width=325, height=217)\n",
      "2023-02-22 21:51:52,753 - rasterio._io - DEBUG - IO window xoff=917.0 yoff=3628.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:52,991 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a2b8e0>\n",
      "2023-02-22 21:51:52,992 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:52,992 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:52,993 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2bf40> created\n",
      "2023-02-22 21:51:52,995 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:52,997 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:52,998 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2bf40>.\n",
      "2023-02-22 21:51:52,999 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a2b8e0>\n",
      "2023-02-22 21:51:53,000 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:53,004 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:53,005 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210821-20210902/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:53,006 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a2b8e0>\n",
      "2023-02-22 21:51:53,007 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2bf40> options\n",
      "2023-02-22 21:51:53,008 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2bf40>.\n",
      "2023-02-22 21:51:53,010 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:53,011 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a2b8e0>\n",
      "2023-02-22 21:51:53,020 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:53,024 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659d4b20>\n",
      "2023-02-22 21:51:53,025 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:53,027 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:53,028 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2bf70> created\n",
      "2023-02-22 21:51:53,030 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:53,031 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:53,032 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2bf70>.\n",
      "2023-02-22 21:51:53,033 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659d4b20>\n",
      "2023-02-22 21:51:53,034 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659d4b20>\n",
      "2023-02-22 21:51:53,036 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2bf70> options\n",
      "2023-02-22 21:51:53,037 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2bf70>.\n",
      "2023-02-22 21:51:53,038 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:53,039 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659d4b20>\n",
      "2023-02-22 21:51:53,051 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:53,052 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:53,053 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:53,055 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:53,056 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:53,057 - rasterio._io - DEBUG - Window: Window(col_off=923, row_off=3624, width=325, height=217)\n",
      "2023-02-22 21:51:53,058 - rasterio._io - DEBUG - IO window xoff=923.0 yoff=3624.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:53,334 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659dc040>\n",
      "2023-02-22 21:51:53,335 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:53,335 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:53,336 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2b8e0> created\n",
      "2023-02-22 21:51:53,337 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:53,339 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:53,340 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2b8e0>.\n",
      "2023-02-22 21:51:53,341 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659dc040>\n",
      "2023-02-22 21:51:53,343 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:53,345 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:53,347 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210821-20210914/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:53,347 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659dc040>\n",
      "2023-02-22 21:51:53,348 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2b8e0> options\n",
      "2023-02-22 21:51:53,349 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2b8e0>.\n",
      "2023-02-22 21:51:53,350 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:53,351 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659dc040>\n",
      "2023-02-22 21:51:53,362 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:53,366 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e3fa0>\n",
      "2023-02-22 21:51:53,367 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:53,367 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:53,369 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a65a2b8e0> created\n",
      "2023-02-22 21:51:53,370 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:53,371 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:53,372 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a65a2b8e0>.\n",
      "2023-02-22 21:51:53,372 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e3fa0>\n",
      "2023-02-22 21:51:53,373 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e3fa0>\n",
      "2023-02-22 21:51:53,374 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a65a2b8e0> options\n",
      "2023-02-22 21:51:53,377 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a65a2b8e0>.\n",
      "2023-02-22 21:51:53,378 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:53,378 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e3fa0>\n",
      "2023-02-22 21:51:53,391 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:53,393 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:53,394 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:53,395 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:53,396 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:53,397 - rasterio._io - DEBUG - Window: Window(col_off=923, row_off=3624, width=325, height=217)\n",
      "2023-02-22 21:51:53,398 - rasterio._io - DEBUG - IO window xoff=923.0 yoff=3624.0 width=325.0 height=217.0\n",
      "2023-02-22 21:51:53,707 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a659e3d60>\n",
      "2023-02-22 21:51:53,708 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:53,708 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:53,709 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659e3c40> created\n",
      "2023-02-22 21:51:53,710 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:53,710 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:53,712 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659e3c40>.\n",
      "2023-02-22 21:51:53,713 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a659e3d60>\n",
      "2023-02-22 21:51:53,713 - rasterio._base - DEBUG - Sharing flag: 0\n",
      "2023-02-22 21:51:53,716 - rasterio._base - DEBUG - Nodata success: 0, Nodata value: -10000.000000\n",
      "2023-02-22 21:51:53,717 - rasterio._base - DEBUG - Dataset <open DatasetReader name='/home/jovyan/rmnp_landslide/proc_T56D/20210902-20210914/merged/filt_topophase.flat.geo.vrt' mode='r'> is started.\n",
      "2023-02-22 21:51:53,718 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a659e3d60>\n",
      "2023-02-22 21:51:53,718 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659e3c40> options\n",
      "2023-02-22 21:51:53,719 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659e3c40>.\n",
      "2023-02-22 21:51:53,720 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:53,721 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a659e3d60>\n",
      "2023-02-22 21:51:53,731 - rasterio.crs - DEBUG - Matched. confidence=100, c_code=b'4326', c_name=b'EPSG'\n",
      "2023-02-22 21:51:53,734 - rasterio.env - DEBUG - Entering env context: <rasterio.env.Env object at 0x7f8a65a68a30>\n",
      "2023-02-22 21:51:53,735 - rasterio.env - DEBUG - Starting outermost env\n",
      "2023-02-22 21:51:53,736 - rasterio.env - DEBUG - No GDAL environment exists\n",
      "2023-02-22 21:51:53,736 - rasterio.env - DEBUG - New GDAL environment <rasterio._env.GDALEnv object at 0x7f8a659dc160> created\n",
      "2023-02-22 21:51:53,737 - rasterio._env - DEBUG - GDAL_DATA found in environment.\n",
      "2023-02-22 21:51:53,738 - rasterio._env - DEBUG - PROJ_DATA found in environment.\n",
      "2023-02-22 21:51:53,740 - rasterio._env - DEBUG - Started GDALEnv: self=<rasterio._env.GDALEnv object at 0x7f8a659dc160>.\n",
      "2023-02-22 21:51:53,740 - rasterio.env - DEBUG - Entered env context: <rasterio.env.Env object at 0x7f8a65a68a30>\n",
      "2023-02-22 21:51:53,741 - rasterio.env - DEBUG - Exiting env context: <rasterio.env.Env object at 0x7f8a65a68a30>\n",
      "2023-02-22 21:51:53,742 - rasterio.env - DEBUG - Cleared existing <rasterio._env.GDALEnv object at 0x7f8a659dc160> options\n",
      "2023-02-22 21:51:53,743 - rasterio._env - DEBUG - Stopped GDALEnv <rasterio._env.GDALEnv object at 0x7f8a659dc160>.\n",
      "2023-02-22 21:51:53,744 - rasterio.env - DEBUG - Exiting outermost env\n",
      "2023-02-22 21:51:53,744 - rasterio.env - DEBUG - Exited env context: <rasterio.env.Env object at 0x7f8a65a68a30>\n",
      "2023-02-22 21:51:53,756 - rasterio._io - DEBUG - Output nodata value read from file: None\n",
      "2023-02-22 21:51:53,756 - rasterio._io - DEBUG - Output nodata values: [None]\n",
      "2023-02-22 21:51:53,758 - rasterio._io - DEBUG - all_valid: True\n",
      "2023-02-22 21:51:53,759 - rasterio._io - DEBUG - mask_flags: ([<MaskFlags.all_valid: 1>],)\n",
      "2023-02-22 21:51:53,760 - rasterio._io - DEBUG - Jump straight to _read()\n",
      "2023-02-22 21:51:53,760 - rasterio._io - DEBUG - Window: Window(col_off=906, row_off=3622, width=325, height=217)\n",
      "2023-02-22 21:51:53,761 - rasterio._io - DEBUG - IO window xoff=906.0 yoff=3622.0 width=325.0 height=217.0\n"
     ]
    }
   ],
   "source": [
    "igram_dss = []\n",
    "coh_dss = []\n",
    "igram_name = 'merged/filt_topophase.flat.geo.vrt'\n",
    "coh_name = 'merged/topophase.cor.geo.vrt'\n",
    "\n",
    "for pair in pair_dict:\n",
    "    igram_src = xr_read_vrt(f'{proc_path}/{pair}/{igram_name}', 'wrapped_phase')\n",
    "    if igram_src != None:\n",
    "        igram_src = igram_src.assign_coords({\"dates\": pair})\n",
    "        igram_src = igram_src.expand_dims(\"dates\")\n",
    "        igram_dss.append(igram_src)\n",
    "                            \n",
    "        # coh_src = xr_read_vrt(f'{proc_path}/{pair}/{coh_name}', 'coherence')\n",
    "        # coh_src = coh_src.assign_coords({\"dates\": pair})\n",
    "        # coh_src = coh_src.expand_dims(\"dates\")\n",
    "        # coh_dss.append(coh_src)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "40347759-32b3-41ef-a9c0-8dc368b1c814",
   "metadata": {},
   "outputs": [],
   "source": [
    "# standardize coordinates before concat\n",
    "igram_dss_standard = [igram_dss[0]]\n",
    "coh_dss_standard = []\n",
    "\n",
    "x_reference = igram_dss[0]['x'].values\n",
    "y_reference = igram_dss[0]['y'].values\n",
    "\n",
    "for ds in igram_dss[1:]:\n",
    "    ds = ds.assign_coords({'x': ('x', x_reference),\n",
    "                      'y': ('y', y_reference)})\n",
    "    igram_dss_standard.append(ds)\n",
    "    \n",
    "for ds in coh_dss:\n",
    "    ds = ds.assign_coords({'x': ('x', x_reference),\n",
    "                      'y': ('y', y_reference)})\n",
    "    coh_dss_standard.append(ds)\n",
    "    \n",
    "\n",
    "igram_ds = xr.concat(igram_dss_standard, dim='dates', combine_attrs=\"no_conflicts\") #create dataset\n",
    "#coh_ds = xr.concat(coh_dss_standard, dim='dates', combine_attrs=\"no_conflicts\") #create dataset\n",
    "#igram_ds['coherence'] = (('dates', 'y', 'x'), coh_ds['coherence'].values)\n",
    "igram_ds['phase'] = (('dates', 'y', 'x'), np.angle(igram_ds.wrapped_phase))"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "208796fc-119d-44de-8888-46d5b113c72f",
   "metadata": {},
   "source": [
    "### Change reference points"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f02a15ee-244a-42ef-aa72-306436867963",
   "metadata": {
    "tags": []
   },
   "outputs": [],
   "source": [
    "# function to find value of new reference point in each time slice and subtract it from data array\n",
    "rref_list = []\n",
    "\n",
    "def change_ref(ds, lat, lon):\n",
    "    reref = ds.copy(deep=True)\n",
    "    for i in range(ds.sizes['dates']):\n",
    "        # get value from grid\n",
    "        rref_list.append(float(ds.isel(dates=i).phase.sel(x=lon, y=lat, method='nearest').values))\n",
    "    reref['phase'] = ds['phase'] - xr.DataArray(rref_list, dims='dates')\n",
    "    return reref "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "de459c37-6738-41a2-be30-47922097e555",
   "metadata": {
    "tags": []
   },
   "outputs": [],
   "source": [
    "igram_ds = change_ref(igram_ds, 40.302141, -105.685762)"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "121f20c6-be97-42ef-92d0-ab8671a80ede",
   "metadata": {},
   "source": [
    "### Convert to velocities in m/yr"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "fadebc90-19e4-40c8-a4a0-3baf35595536",
   "metadata": {},
   "outputs": [],
   "source": [
    "delta_list = []\n",
    "for date in igram_ds['dates'].values:\n",
    "    delta_list.append((datetime.strptime(date[9:17], '%Y%m%d')-datetime.strptime(date[0:8], '%Y%m%d')).days)\n",
    "    \n",
    "igram_ds = igram_ds.assign_coords({'timedelta':('timedelta', delta_list)})\n",
    "\n",
    "veloc = (((igram_ds['unw_phase']*0.05546576/12.5663706)/igram_ds['timedelta'])*365)[0].values\n",
    "igram_ds['veloc'] = (('y', 'x', 'dates'), veloc.data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "0529ba78-3d64-4645-840c-87422b5152dc",
   "metadata": {},
   "outputs": [],
   "source": [
    "veloc.shape"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "536f9331-2cd9-4fb3-80bd-d946e7e1abdc",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "# f, ax = plt.subplots()\n",
    "# ax.imshow(igram_ds['veloc'].median(dim=\"dates\"), cmap='RdBu', vmin=-0.4, vmax=0.4) "
   ]
  },
  {
   "cell_type": "markdown",
   "id": "5d808152-23e0-4288-b76e-df9dba2039bc",
   "metadata": {},
   "source": [
    "### filter and stack"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "60f2a4e5-6084-43be-a60d-814eb7d21067",
   "metadata": {},
   "outputs": [],
   "source": [
    "# all years \n",
    "f, ax = plt.subplots(3, 1, figsize=(10, 10))\n",
    "ax[0].imshow(igram_ds['veloc'].where(igram_ds['coherence'] > 0.5).median(dim='dates'),\n",
    "         cmap='RdBu', vmin=-0.4, vmax=0.4)\n",
    "ax[1].imshow(igram_ds['veloc'].where(igram_ds['coherence'] > 0.5).count(dim='dates'), cmap='Blues', vmax=45)\n",
    "f.tight_layout()\n",
    "ax[2].imshow(igram_ds['veloc'].where(igram_ds['coherence'] > 0.5).std(dim='dates'), cmap='Blues', vmax=0.4)\n",
    "f.tight_layout()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1042abe5-831c-4388-b2bd-9659386e9ba7",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "# save filtered velocities and counts \n",
    "#igram_ds['veloc'].where(igram_ds['coherence'] > 0.5).mean(dim='dates').rio.to_raster('T56D_asc_veloc_mean_0.5coh.tif')\n",
    "\n",
    "# for some reason these two aren't saving correctly. \n",
    "#igram_ds['veloc'].where(igram_ds['coherence'] > 0.5).count(dim='dates').rio.to_raster('T151_asc_veloc_count_0.5coh.tif')\n",
    "#igram_ds['veloc'].where(igram_ds['coherence'] > 0.5).count(dim='dates').rio.to_raster('T151_asc_veloc_std_0.5coh.tif')"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "b4a5ff7a-b958-4a4d-9685-d6f9a6a9d753",
   "metadata": {},
   "source": [
    "### mean veloc in feature"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "505a8aeb-2e67-48ef-8a41-48023b8aae26",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "# load json of aoi \n",
    "#aoi_fn = '/home/jovyan/rmnp_landslide/moving_area.shp'\n",
    "#aoi_gdf = gpd.read_file(aoi_fn)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "414c4089-17de-4f97-8290-9f37cf24c19a",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "#igram_aoi = igram_ds.rio.clip(aoi_gdf.geometry, crs=aoi_gdf.crs, drop=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "197e56b7-f93d-49c1-892a-988e0e997a0a",
   "metadata": {},
   "outputs": [],
   "source": [
    "# mean velocity\n",
    "np.nanmean(igram_aoi['veloc'].where(igram_ds['coherence'] > 0.5).values.ravel())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8d1aa919-686d-492c-a7ec-9983b34e8edc",
   "metadata": {},
   "outputs": [],
   "source": [
    "# velocity std dev\n",
    "np.nanstd(igram_aoi['veloc'].where(igram_ds['coherence'] > 0.5).values.ravel())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d69a7910-9742-449d-8a85-71115810b7b1",
   "metadata": {},
   "outputs": [],
   "source": [
    "# max velocity\n",
    "np.nanmin(igram_aoi['veloc'].where(igram_ds['coherence'] > 0.5).mean(dim='dates').values.ravel())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8f4e9124-13d3-4aac-89b2-922fe04d5d84",
   "metadata": {},
   "outputs": [],
   "source": [
    "# mean coherence\n",
    "np.nanmean(igram_aoi['coherence'].values.ravel())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "870ab65c-56e4-4bba-8685-cab562529377",
   "metadata": {},
   "outputs": [],
   "source": [
    "# average number of ints used to calculate velocities\n",
    "temp = igram_aoi['veloc'].where(igram_ds['coherence'] > 0.5).count(dim='dates')\n",
    "np.nanmean(temp.where(temp != 0))"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "cceda32f-8bbf-445d-aa5d-9d35907680f9",
   "metadata": {},
   "source": [
    "## filter by coherence area surrounding aoi"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f4c569c9-b1d7-4564-a901-d266da240117",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "# load json of aoi \n",
    "#aoi_area_fn = '/home/jovyan/rmnp_landslide/feature_area.shp'\n",
    "#aoi_area_gdf = gpd.read_file(aoi_area_fn)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "28785ab1-a5ab-4507-953a-5f7ab389ac30",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "# clip to aoi\n",
    "#igram_ds_aoi_area = igram_ds.rio.clip(aoi_area_gdf.geometry, crs=aoi_area_gdf.crs, drop=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "67b3c097-ebf9-44df-bdde-af05b962b80a",
   "metadata": {},
   "outputs": [],
   "source": [
    "igram_high_coh = igram_ds.sel(dates=igram_ds_aoi_area.coherence.median(dim=('x', 'y')) > 0.6)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "aa28d22f-ac36-40dc-b120-a7723911cd7f",
   "metadata": {},
   "outputs": [],
   "source": [
    "igram_high_coh"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e550daee-a6fe-4f2c-88c7-a60f22a50e85",
   "metadata": {},
   "outputs": [],
   "source": [
    "f, ax = plt.subplots(3, 1, figsize=(10, 10))\n",
    "ax[0].imshow(igram_high_coh['veloc'].where(igram_ds['coherence'] > 0.3).median(dim='dates'),\n",
    "         cmap='RdBu', vmin=-0.4, vmax=0.4)\n",
    "ax[1].imshow(igram_high_coh['veloc'].where(igram_ds['coherence'] > 0.3).count(dim='dates'), cmap='Blues', vmax=20)\n",
    "f.tight_layout()\n",
    "ax[2].imshow(igram_high_coh['veloc'].where(igram_ds['coherence'] > 0.3).std(dim='dates'), cmap='Blues', vmax=0.4)\n",
    "f.tight_layout()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "5863b1f7-2770-456f-ac20-e0a7f948adcf",
   "metadata": {},
   "outputs": [],
   "source": [
    "igram_ds.phase.to_netcdf(\"DT56_ds_wrapped.nc\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ebef0e25-4fc3-4104-b2b4-dde1bb40660e",
   "metadata": {},
   "outputs": [],
   "source": [
    "ds_disk = xr.open_dataset(\"AT151_ds_wrapped.nc\")"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "c26cf93d-ac6a-4a01-91d1-24e7de5b21e1",
   "metadata": {},
   "source": [
    "## Make igram baseline figure"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6c4ac0b0-c723-44d2-8f6c-095cd119f20a",
   "metadata": {},
   "outputs": [],
   "source": [
    "def toYearFraction(date):\n",
    "    def sinceEpoch(date): # returns seconds since epoch\n",
    "        return time.mktime(date.timetuple())\n",
    "    s = sinceEpoch\n",
    "\n",
    "    year = date.year\n",
    "    startOfThisYear = datetime(year=year, month=1, day=1)\n",
    "    startOfNextYear = datetime(year=year+1, month=1, day=1)\n",
    "\n",
    "    yearElapsed = s(date) - s(startOfThisYear)\n",
    "    yearDuration = s(startOfNextYear) - s(startOfThisYear)\n",
    "    fraction = yearElapsed/yearDuration\n",
    "\n",
    "    return date.year + fraction"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9bf1847d-f105-44c6-bb7f-fe718b471a08",
   "metadata": {},
   "outputs": [],
   "source": [
    "lines = []\n",
    "for i, date in enumerate(igram_ds['dates'].values):\n",
    "    lines.append([(toYearFraction(datetime.strptime(date[0:8], '%Y%m%d')), i), (toYearFraction(datetime.strptime(date[9:17], '%Y%m%d')), i)])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b39092be-4dbb-40b2-b11d-d905e32c812d",
   "metadata": {},
   "outputs": [],
   "source": [
    "lc = mc.LineCollection(lines, linewidths=4)\n",
    "\n",
    "plt.style.use('ggplot')\n",
    "f, ax = plt.subplots(figsize=(5, 5))\n",
    "ax.add_collection(lc)\n",
    "ax.margins(0.1)\n",
    "ax.set_ylabel('index')\n",
    "\n",
    "plt.savefig('tbline_T56D.png', dpi=300)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1f19d8f9-6f4c-4f74-9416-3f842bdb7e67",
   "metadata": {},
   "outputs": [],
   "source": [
    "print(f'mean tbaseline: {np.mean(delta_list)} days, max tbaseline: {np.max(delta_list)} days, min tbaseline: {np.min(delta_list)} days')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "321f77f9-a90c-47a9-ac5e-a9201df3528c",
   "metadata": {},
   "outputs": [],
   "source": [
    "# interferogram length capped at 40 days to avoid decorrelation\n",
    "# mean interferogram length: 21.8 days, max length: 36 days, min length: 12 days"
   ]
  }
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