Grizli Modules Not Found

[Bren314]

When running the second cell of Grizli-Pipeline.ipynb I get the errror AttributeError: module 'grizli' has no attribute 'version'

I also notice when running this cell that it is using the lines ! git clone https://github.com/gbrammer/grizli.git and
! pip install grizli/ -r grizli/requirements.txt rather than the import grizli.
Due to this I can also see it return things it had in my terminal when I was installing grizli such as lines as: Requirement already satisfied: numpy in /opt/anaconda3/envs/grizli-dev/lib/python3.7/site-packages (from grizli==1.4.0) (1.21.5)

I fallowed the installation instructions on https://grizli.readthedocs.io/en/latest/grizli/install.html#installation-with-conda-and-environment-yml. When I ran the pytest on grizli it returns:

===========short test summary info =====================
FAILED grizli/tests/test_autoscript.py::UtilsTester::test_parse_wfc3_visits
FAILED grizli/tests/test_fits.py::FittingTools::test_config - FileNotFoundErr...
FAILED grizli/tests/test_fits.py::FittingTools::test_multibeam - FileNotFound...
FAILED grizli/tests/test_fits.py::FittingTools::test_redshift_fit - FileNotFo...
===========4 failed, 12 passed in 31.97s =================

Not sure where to go from here, so any tip can help a lot.

[gbrammer]

Thanks, @Bren314 . Can you try compiling with the -e flag, i.e., pip install -e . -r requirements.txt from within the grizli repository directory? That should compile the c extensions in the correct place and also populate version.py. Running from up a directory like you had may also work, I've just never run it that way.

[Bren314]

Hey Gabe, that did not work. I'm not too sure where to start. My terminal told me I successfully installed grizli, but when I go into python to start testing it. It allows me to import grizli but the version is an empty string and it won't import any modules that I know are installed (see error below):

Successfully installed grizli-1.4.0
(grizli-dev) grizli Users $ python
Python 3.7.0 (v3.7.0:1bf9cc5093, Jun 26 2018, 23:26:24)
[Clang 6.0 (clang-600.0.57)] on darwin
Type "help", "copyright", "credits" or "license" for more information.

import grizli
grizli.version
''
import numpy
Traceback (most recent call last):
File "", line 1, in
ModuleNotFoundError: No module named 'numpy'

I noticed a previous post about "Numpy module not found when installing with requirements.txt #59" and trying to solve it by first pip installing numpy and then re-running the command, I pip uninstalled and reinstalled it still didn't work.

[Bren314]

Hey it is working now not sure why

[gbrammer]

I suspect that you were trying to import grizli from within the repository directory, which will have problems.