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Two new BIOM endpoint types for eDNA data #535

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thomasstjerne opened this issue Nov 1, 2023 · 2 comments
Open

Two new BIOM endpoint types for eDNA data #535

thomasstjerne opened this issue Nov 1, 2023 · 2 comments
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@thomasstjerne @fmendezh

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@thomasstjerne
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Could we please have BIOM1_0_GBIF_v1_0 (Biom 1 Json) and BIOM2_1_GBIF_v1_0 (Biom 2.1 hdf5) added to the enum_endpoint_type?

The eDNA tool could then register the location of these BIOM files along with the DWC archive.
@thomasstjerne thomasstjerne mentioned this issue Jan 11, 2024
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@timrobertson100
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Please can you have this in production by end 30th September @fmendezh ?

fmendezh added a commit to gbif/gbif-api that referenced this issue Sep 26, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
e53f991 
gbif/registry#621
@fmendezh fmendezh mentioned this issue Sep 27, 2024
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@MattBlissett
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Do we want to add a GBIF version number here? We don't have it for other versioned endpoints (e.g. BIOCASE, DIGIR, EML).

fmendezh added a commit to gbif/gbif-api that referenced this issue Sep 27, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
347279e 
gbif/registry#621

renaming the endpoint types and installation type name
fmendezh added a commit that referenced this issue Sep 27, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
eb386be 
#621
fmendezh added a commit that referenced this issue Sep 29, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
876b3d6 
#621
fmendezh added a commit to gbif/download-query-tools that referenced this issue Sep 29, 2024
@fmendezh
adding biom endpoint types
83e99df 
gbif/registry#535
gbif/registry#621
fmendezh added a commit that referenced this issue Sep 29, 2024
@fmendezh
upgrading to download query tools that which has labels for the BIOM …
65c6e0f 
…endpoints

#535
#621
fmendezh added a commit to gbif/crawler that referenced this issue Sep 29, 2024
@fmendezh
gbif/registry#621
154adfd 
gbif/registry#535
fmendezh added a commit to gbif/crawler that referenced this issue Sep 29, 2024
@fmendezh
gbif/registry#621
d0cb40e 
gbif/registry#535
fmendezh added a commit to gbif/crawler that referenced this issue Sep 29, 2024
@fmendezh
gbif/registry#621
55f1c0e 
gbif/registry#535
fmendezh added a commit to gbif/occurrence that referenced this issue Sep 29, 2024
@fmendezh
https://github.com/gbif/registry/issues/621
c3b3a16 
gbif/registry#535
fmendezh added a commit to gbif/postal-service that referenced this issue Sep 29, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
d91ed8f 
gbif/registry#621
fmendezh added a commit that referenced this issue Sep 29, 2024
@fmendezh
upgrading to download query tools that which has labels for the BIOM …
1939726 
…endpoints

#535
#621
fmendezh added a commit to gbif/occurrence that referenced this issue Sep 29, 2024
@fmendezh
https://github.com/gbif/registry/issues/621
48b445a 
gbif/registry#535
fmendezh added a commit to gbif/maps that referenced this issue Sep 30, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
1dbaf2e 
gbif/registry#621
marcos-lg pushed a commit to gbif/download-query-tools that referenced this issue Sep 30, 2024
@fmendezh @marcos-lg
adding biom endpoint types
569a037 
gbif/registry#535
gbif/registry#621

(cherry picked from commit 83e99df)
fmendezh added a commit to gbif/crawler that referenced this issue Oct 1, 2024
@fmendezh
reverting assumption that BIOM endpoints can be converted to DWCA
e965ed6 
gbif/registry#621
gbif/registry#535
fmendezh added a commit to gbif/gbif-api that referenced this issue Oct 2, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
3560b2b 
gbif/registry#621

renaming the endpoint types and installation type name
fmendezh added a commit to gbif/download-query-tools that referenced this issue Oct 8, 2024
@fmendezh
adding biom endpoint types
74fcd76 
gbif/registry#535
gbif/registry#621
fmendezh added a commit to gbif/crawler that referenced this issue Oct 8, 2024
@fmendezh
reverting assumption that BIOM endpoints can be converted to DWCA
cea05f3 
gbif/registry#621
gbif/registry#535
fmendezh added a commit to gbif/gbif-api that referenced this issue Oct 9, 2024
@fmendezh
https://github.com/gbif/registry/issues/535
19f22a1 
gbif/registry#621

MDT InstallationType and BIOM EndpointType
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@timrobertson100 @MattBlissett @thomasstjerne @fmendezh