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Some Elasticsearch downloads get stuck, logs show identical error:
>>> Invoking Main class now >>> INFO: loading log4j config file log4j.properties. INFO: log4j config file log4j.properties loaded successfully. Setting [tez.application.tags] tag: oozie-ebea692ea0f668d527ec0dcf761171d Setting [spark.yarn.tags] tag: oozie-ebea692ea0f668d527ec0dcf761171d Fetching child yarn jobs tag id : oozie-ebea692ea0f668d527ec0dcf761171d Child yarn jobs are found - Main class : org.gbif.occurrence.download.oozie.FromSearchDownloadAction Arguments : DWCA { "bool" : { "filter" : [ { "bool" : { "filter" : [ { "term" : { "gbifClassification.taxonKey" : { "value" : "1000003", "boost" : 1.0 } } } ], "adjust_pure_negative" : true, "boost" : 1.0 } }, { "bool" : { "filter" : [ { "term" : { "hasCoordinate" : { "value" : "true", "boost" : 1.0 } } } ], "adjust_pure_negative" : true, "boost" : 1.0 } }, { "bool" : { "filter" : [ { "term" : { "hasGeospatialIssue" : { "value" : "false", "boost" : 1.0 } } } ], "adjust_pure_negative" : true, "boost" : 1.0 } }, { "bool" : { "filter" : [ { "term" : { "occurrenceStatus" : { "value" : "PRESENT", "boost" : 1.0 } } } ], "adjust_pure_negative" : true, "boost" : 1.0 } } ], "adjust_pure_negative" : true, "boost" : 1.0 } } 0266719-220831081235567 {"type":"and","predicates":[{"type":"equals","key":"TAXON_KEY","value":"1000003","matchCase":false},{"type":"equals","key":"HAS_COORDINATE","value":"true","matchCase":false},{"type":"equals","key":"HAS_GEOSPATIAL_ISSUE","value":"false","matchCase":false},{"type":"equals","key":"OCCURRENCE_STATUS","value":"PRESENT","matchCase":false}]} 0266719_220831081235567 lyrodus06 Occurrence null [ERROR] [01/31/2023 03:48:13.333] [DownloadSystem0266719-220831081235567-akka.actor.default-dispatcher-6] [akka://DownloadSystem0266719-220831081235567/user/DownloadMaster0266719-220831081235567] java.io.FileNotFoundException: File tmp/0266719-220831081235567/0266719_220831081235567_citations.txt does not exist java.lang.RuntimeException: java.io.FileNotFoundException: File tmp/0266719-220831081235567/0266719_220831081235567_citations.txt does not exist at org.gbif.occurrence.download.file.dwca.archive.DownloadArchiveBuilder.buildArchive(DownloadArchiveBuilder.java:128) at org.gbif.occurrence.download.file.dwca.DwcaArchiveBuilder.buildArchive(DwcaArchiveBuilder.java:203) at org.gbif.occurrence.download.file.dwca.akka.DwcaDownloadAggregator.aggregate(DwcaDownloadAggregator.java:102) at org.gbif.occurrence.download.file.DownloadMaster.aggregateAndShutdown(DownloadMaster.java:125) at org.gbif.occurrence.download.file.DownloadMaster.runActors(DownloadMaster.java:211) at org.gbif.occurrence.download.file.DownloadMaster.onReceive(DownloadMaster.java:154) at akka.actor.UntypedActor$$anonfun$receive$1.apply(UntypedActor.scala:154) at akka.actor.UntypedActor$$anonfun$receive$1.apply(UntypedActor.scala:153) at akka.actor.Actor$class.apply(Actor.scala:318) at akka.actor.UntypedActor.apply(UntypedActor.scala:93) at akka.actor.ActorCell.invoke(ActorCell.scala:626) at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:197) at akka.dispatch.Mailbox.run(Mailbox.scala:179) at akka.dispatch.ForkJoinExecutorConfigurator$MailboxExecutionTask.exec(AbstractDispatcher.scala:516) at akka.jsr166y.ForkJoinTask.doExec(ForkJoinTask.java:259) at akka.jsr166y.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:975) at akka.jsr166y.ForkJoinPool.runWorker(ForkJoinPool.java:1479) at akka.jsr166y.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:104) Caused by: java.io.FileNotFoundException: File tmp/0266719-220831081235567/0266719_220831081235567_citations.txt does not exist at org.apache.hadoop.fs.RawLocalFileSystem.listStatus(RawLocalFileSystem.java:414) at org.apache.hadoop.fs.FileSystem.listStatus(FileSystem.java:1566) at org.apache.hadoop.fs.FileSystem.listStatus(FileSystem.java:1609) at org.apache.hadoop.fs.ChecksumFileSystem.listStatus(ChecksumFileSystem.java:667) at org.gbif.occurrence.download.file.dwca.archive.CitationFileReader.read(CitationFileReader.java:66) at org.gbif.occurrence.download.file.dwca.archive.DownloadArchiveBuilder.buildArchive(DownloadArchiveBuilder.java:119) ... 17 more Heart beat Heart beat Heart beat Heart beat Heart beat Heart beat
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Some Elasticsearch downloads get stuck, logs show identical error:
The text was updated successfully, but these errors were encountered: