diff --git a/README.rst b/README.rst index 198dfcb..3de9fb8 100644 --- a/README.rst +++ b/README.rst @@ -1,7 +1,7 @@ StarDist OPP ============ -|PyPI| |Status| |Python Version| |License| +|PyPI| |Zenodo| |Status| |Python Version| |License| |Read the Docs| |Tests| |Codecov| @@ -34,6 +34,9 @@ StarDist OPP .. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg :target: https://github.com/psf/black :alt: Black +.. |Zenodo| image:: https://zenodo.org/badge/454865222.svg + :target: https://zenodo.org/badge/latestdoi/454865222 + :alt: Zenodo This repository contains the python package for the new StarDist post-processing step *StarDist OPP*. *StarDist OPP* allows to use `StarDist`_ segmentation on non-star-convex objects. In our `paper`_, we show that *StarDist OPP* outperforms other methods in instance segmentation tasks for three-dimensional microbial biofilms. Check it out for more information. diff --git a/noxfile.py b/noxfile.py index 8e3c55b..189a5c1 100644 --- a/noxfile.py +++ b/noxfile.py @@ -146,6 +146,8 @@ def safety(session: Session) -> None: "--ignore=44715", "--ignore=44716", "--ignore=44717", + # ignore a tornado safety issue + "--ignore=59071", ) diff --git a/pyproject.toml b/pyproject.toml index 6d36710..7e4419f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ homepage = "https://github.com/gatoniel/merge-stardist-masks" repository = "https://github.com/gatoniel/merge-stardist-masks" documentation = "https://merge-stardist-masks.readthedocs.io" classifiers = [ - "Development Status :: 1 - Planning", + "Development Status :: 5 - Production/Stable", ] [tool.poetry.urls]