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PASSAGE

Learning phenotype associated signature in spatial transcriptomics with PASSAGE Model architecture

Environment

mamba env create -f passage_environment.yaml
mamba activate passage

Installation

git clone https://github.com/gao-lab/PASSAGE
cd PASSAGE
python setup.py build
python setup.py install

Tutorial

For usage, please see the jupyter-notebook example here.

Citations

Guo, C.-K., Xia, C.-R., Peng, G., Cao, Z.-J. & Gao, G. Learning phenotype associated signature in spatial transcriptomics with PASSAGE. bioRxiv (2024) doi:10.1101/2024.09.06.611564.