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Error on scglue.genomics.rna_anchored_guidance_graph: not all features are strand specific! #121

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Freedom04 opened this issue Jun 9, 2024 · 1 comment
Open

Error on scglue.genomics.rna_anchored_guidance_graph: not all features are strand specific! #121

Freedom04 opened this issue Jun 9, 2024 · 1 comment

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@Freedom04
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Hello, I have the error when running guidance = scglue.genomics.rna_anchored_guidance_graph(rna, atac) when using my dataset.

image

I will appreciate if you could help me to figure it out. Thanks!
@Jeff1995
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Hi @Freedom04. Thank you for your interest in GLUE! Could you check whether each gene in your rna.var contains a "strand" column with value in "+"/"-"? All genes must have strand information for the guidance graph construction to work.

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@Jeff1995 @Freedom04