diff --git a/tools.yml b/tools.yml index 3a0065c..0b70b3a 100644 --- a/tools.yml +++ b/tools.yml @@ -935,6 +935,8 @@ tools: cores: 8 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_markdupes/je_markdupes/.*: cores: 8 + toolshed.g2.bx.psu.edu/repos/goeckslab/mesmer/mesmer/.*: + inherits: __docker_tool toolshed.g2.bx.psu.edu/repos/guerler/charts/charts/.*: mem: 10 toolshed.g2.bx.psu.edu/repos/imgteam/projective_transformation/ip_projective_transformation/.*: @@ -2165,6 +2167,16 @@ tools: toolshed.g2.bx.psu.edu/repos/nml/spades/spades/.*: cores: 20 mem: 330 + toolshed.g2.bx.psu.edu/repos/perssond/basic_illumination/basic_illumination/.*: + inherits: __docker_tool + toolshed.g2.bx.psu.edu/repos/perssond/coreograph/unet_coreograph/.*: + inherits: __docker_tool + toolshed.g2.bx.psu.edu/repos/perssond/quantification/quantification/.*: + inherits: __docker_tool + toolshed.g2.bx.psu.edu/repos/perssond/s3segmenter/s3segmenter/.*: + inherits: __docker_tool + toolshed.g2.bx.psu.edu/repos/perssond/unmicst/unmicst/.*: + inherits: __docker_tool toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/.*: mem: 20 toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/.*: @@ -2177,6 +2189,8 @@ tools: mem: 34.2 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/.*: cores: 3 + toolshed.g2.bx.psu.edu/repos/q2d2/qiime2.*: + inherits: __docker_tool toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/.*: mem: 64 toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/.*: @@ -2293,6 +2307,13 @@ tools: mem: 8 Extract genomic DNA 1: cores: 3 + __docker_tool: + params: + docker_enabled: true + scheduling: + require: + - docker + abstract: true bfast_wrapper: cores: 10 mem: 20