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Address decimal issue of cross contamination rate matrix #45

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Tracked by #137
justinjj24 opened this issue Nov 19, 2024 · 1 comment
Open
Tracked by #137

Address decimal issue of cross contamination rate matrix #45

justinjj24 opened this issue Nov 19, 2024 · 1 comment
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@mhebrard @lindaxiang @justinjj24

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@justinjj24
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Current release on NPM_sample-qc cross_contamination_rate uses the absolute value of VerifyBamID2 FREEMIX in .selfSM

Correct this value decimal into 2 digits and rounded it agreed in the workgroup meeting to align with ARGO implementation.

Argo to confirm the decimal and round off used.

cross-contamination
@justinjj24
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justinjj24 commented Jan 19, 2025 •
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This issue is addressed and regenerate the metrics for the IGSR diversity 100 samples.

@justinjj24 justinjj24 mentioned this issue Jan 19, 2025
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@mhebrard @lindaxiang @justinjj24