From b1923e1258c75e5663f4d79f50fcc5aed2372bfe Mon Sep 17 00:00:00 2001 From: Matt Stone Date: Mon, 25 Mar 2024 19:21:47 -0400 Subject: [PATCH 1/2] Update SvPileup.md --- docs/tools/SvPileup.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/tools/SvPileup.md b/docs/tools/SvPileup.md index 474b360..2f3b8a2 100644 --- a/docs/tools/SvPileup.md +++ b/docs/tools/SvPileup.md @@ -19,7 +19,7 @@ Two output files will be created: 2. `.bam`: a SAM/BAM file containing reads that contain SV breakpoint evidence annotated with SAM tag. -The `be` SAM tag contains a comma-delimited list of breakpoints to which a given alignment belongs. Each element is +The `be` SAM tag contains a comma-delimited list of breakpoint IDs which a given alignment supports. Each element is semi-colon delimited, with four fields: 1. The unique breakpoint identifier (same identifier found in the tab-delimited output). From 492428e75896e7a1ff24f943f5dc2770207212cc Mon Sep 17 00:00:00 2001 From: Nobody Date: Mon, 25 Mar 2024 23:25:13 +0000 Subject: [PATCH 2/2] Generate docs files --- docs/tools/SvPileup.md | 2 +- docs/tools/index.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/tools/SvPileup.md b/docs/tools/SvPileup.md index 2f3b8a2..474b360 100644 --- a/docs/tools/SvPileup.md +++ b/docs/tools/SvPileup.md @@ -19,7 +19,7 @@ Two output files will be created: 2. `.bam`: a SAM/BAM file containing reads that contain SV breakpoint evidence annotated with SAM tag. -The `be` SAM tag contains a comma-delimited list of breakpoint IDs which a given alignment supports. Each element is +The `be` SAM tag contains a comma-delimited list of breakpoints to which a given alignment belongs. Each element is semi-colon delimited, with four fields: 1. The unique breakpoint identifier (same identifier found in the tab-delimited output). diff --git a/docs/tools/index.md b/docs/tools/index.md index 60870ec..80d86b2 100644 --- a/docs/tools/index.md +++ b/docs/tools/index.md @@ -4,7 +4,7 @@ title: fgsv tools # fgsv tools -The following tools are available in fgsv version 0.1.1-b17d1c9. +The following tools are available in fgsv version 0.1.1-b1923e1. ## All tools All tools.