diff --git a/README.md b/README.md index 01d980c..05d6426 100644 --- a/README.md +++ b/README.md @@ -82,7 +82,7 @@ One shortcoming of the existing behavior, which should be corrected at some poin The tool outputs a table of aggregated breakpoints and a modified copy of the input BAM file where each alignment is tagged with the ID of the aggregate breakpoint it supports (if any). -## `AggregateSvPileupToBedPE` +## `fgsv AggregateSvPileupToBedPE` Converts the output of `AggregateSvPileup` to the [BEDPE format](https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format).