diff --git a/docs/tools/SvPileup.md b/docs/tools/SvPileup.md index fff058c..b3d6f24 100644 --- a/docs/tools/SvPileup.md +++ b/docs/tools/SvPileup.md @@ -20,11 +20,11 @@ Two output files will be created: tag. The `be` SAM tag contains a comma-delimited list of breakpoints to which a given read belongs. Each element is -a semi-colon delimited, with four fields: +semi-colon delimited, with four fields: 1. The unique breakpoint identifier (same identifier found in the tab-delimited output). -2. Either "left" or "right, corresponding to if the read shows evidence of the genomic left or right side of the - breakpoint as found in the breakpoint file (i.e. `left_pos` or `right_pos`). +2. Either "left" or "right, corresponding to whether the read shows evidence of the genomic left or right side of + the breakpoint as found in the breakpoint file (i.e. `left_pos` or `right_pos`). 3. Either "from" or "into", such that when traversing the breakpoint would read through "from" and then into "into" in the sequencing order of the read pair. For a split-read alignment, the "from" contains the aligned portion of the read that comes from earlier in the read in sequencing order. For an alignment of a read-pair diff --git a/docs/tools/index.md b/docs/tools/index.md index be706a9..809f02d 100644 --- a/docs/tools/index.md +++ b/docs/tools/index.md @@ -4,7 +4,7 @@ title: fgsv tools # fgsv tools -The following tools are available in fgsv version 0.0.2-9cbf8a5. +The following tools are available in fgsv version 0.0.3-4fee506. ## All tools All tools.